SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8492

Length: 3006 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8492
ATGGGGAAGATGCTAGGAAGGAGCGGTCGGAAATAACACCCCAGGCTGGCATTTTACTGGATGTGTTTACATATTTTGACACCCATTAAGCTACTGTGAAAGCCCAAACGTCGTGACCTTGGCTGTCACTCAGGGTTACCGCAGATGGGTATTTTACTGGTCCACGAAGTTCGCAGGGTTTTATGCTGAACAGAGATCCAGTTTTTATGGTGTTGATCGTGCTCTCCCCGGTTAAATAGAGAAACCCAACTCATTTCTTGGGCACCCACGTTTCCTTTCATTTTGCATTGTGGTCAAACATTGTTGGCTAAACCGTCTTTGGGGATAAGCTTTCCTGCATATAAATTTTCACAGGTTAAGGCCTGTTCAGATACAGTTTTGGAGACATGCGCTGGATGTGATGGCCAGAGAGGATATGGGGGAGAAGGGATTGAAGCATTCGGTACCGAGCAGTTTGGGCGGCGGTGGATGTTGCGACATGAGTCTGAAATGTAGGTGCAGGTGGAGATGGGATTCTCCGGCTCGTACATGCGTGTTATCGCTTACCTTTATCTTTTTCCTAGCATCGTTTCTAATTTTTGGGGCTTTGGGGATGTTCTTTGCTTGGCTTACATTCTCTCCTTTCGAGAAACCTGCCATGAGCCCTTTTGGTTGTCGAGAGGATAATGAAGGATCATGGTCTATCGGAGTTTATCGTGGAAGAAATCCATTCGCATTGCATCCTATTGAGGAGGAAGGAATTTCGAACGACAGAAGCTCAGCCTGGCCTGTTGCTAATCCTGTATTTACATGTGCATCAGCTTCTGATAGCAGTCACCCGAGCAATTTTGTGGCAGATCCTTTTCTCTATATTCAGGGAGATGTTCTGTACCTGTTCTTTGAGACAAAGAATGCTTTAACAATGCAAGGAGACATTGGTGTGGCAAAAAGCATTGATCAAGGAGCCACCTGGCAACATTTAGGCATTGCTTTAGACGAAGAGTTTCATCTTTCTTATCCTTATGTTTTTGACTATGATGGGCAGATATACATGATGCCCGAGAGTAGTCAGAAAGGGAATCTTCGTCTTTACCGGGCATTGAATTTTCCTCTGGAGTGGAGACTCGAAAAGGTGCTTCTTAAGAAGCCACTTGTAGACACTTTCTTGATCCACTATAATGAAAATTACTGGCTTTTTGGATCAGATGTCAGTCGGTTTGGTGCAATAAAAAATGGAGAGCTGGAAATCTGGTATGCTAATTCACCTCTTGGCCCATGGAAACAACATAAGGGCAATCCTGTGCATAATTTTGATAAAAGCTTAGGTGCAAGGAATGCTGGAAGGCCTTTTGTGTATGATGGACATCTCTATCGCATGGGTCAAGATTGTGGTGACACTTATGGGCATCGTATACGAGCATTTAAAGTAGAAGTGCTCACCAAGGAAAAGTACAGAGAAGTAGAAGTTCCCCTTGGAATTGTTGAGTCTAGGAAAGGACGAAATGCATGGAATGGGATTCGATATCATCATTTGGATGCACAACAGCTACCACTCAGGAGATTGGATAGCAGTGATGGATGGAGACAGAGTTCCTTCTGGTGATTCAACAAGGAGGTTCCTACTTGGATCATTGACATTGTTATTTTTAGGAATACTGGTTATTCTTGTGGGTGTTCTACTGGGTGTGGTCAGATGTGTTTTTCCCCTAAGCAGGTGCCTAGGTGCTGGAAAGAGAAGTGACACTCTGCCATTCTGGACACATCCTCAATTTACATCAAAGCTGCACAAGGCATTTTCTCGCTTGAATAGAAGTAGCTCTGCCTTAAGGGGGAGAATCAGGTTAAACACATGTGGAGGCACATTGCTTCTGTGTTTTCTTTTTTTCCTTGGAGCAGCATCAATCTGTTTTACTGTACGGTGCTTTTTTGGGGGTAATGGCGCAGAAGAGGCATATCCTGTGGAAGGACATTATTCCCAGTTTACCATGCTTACTATGACTTATGAAGCAAGACTTTGGAATTTGAAGATGTATATCAAGCACTACTCTCGGTGTGCATCGGTTAGGGAGATAGTTGTTATTTGGAATAAGGGCCAGCCTCCAAATCCCAATGACTTTGATTCAACTGTACCAGTCCGTATAAGAGTTGAACAGAAAAATTCTTTAAACAACCGTTTCAAGGCTGATCCTCTGATTAAGACAAGAGCCGTACTTGAATTGGATGATGATATAATGATGACATGCAACGATGTTGAAAGAGGGTTCAAAGCATGGCGTGAACATCCTGATAGGCTTGTGGGGTTTTATCCCCGTCTTATAGATGGGAGTCCTTTAAAATACAGAGATGAAAAGTATGCCCGTACAAGGAAAGGTTATAATATGATTTTGACAGGGGCTGCATTCATGGATAGCCAGTCAGCATTTCAGAAGTACTTTAGTGATGAAGCAAAAGAGGGTAGAGATATCGTTGACAAGTACTTCAACTGTGAAGACATCCTAATGAATTTTCTTCTTGCAAATGAGAGCTCCTCAAGAACAGTTGAGTATGTTCATCCAGCATGGGCTATTGACACATCAAAGCTTTCCAGCGCAGCTATTAGCAGAAATACCCAGGTACATTACAGGACAAGGACGCATTGTTTGTTGAAGTTCTCTGAAATATATGGTCATCTTCCTCTACAGAAGTGGGAGTTTGACAGTCGGAAAGACAGTTGGGACTTATAGTATAACAGGAAGAAGTTGAAAAACTGTATATTGTTGCAGCTATTTGTATCGCTTACTCAACCCTTGAAAATTTTTTGATGCACCATTTCTTTCTATGTACTGGACCACTTGTACATTAATCCAACCATCTTTTGCTCCTACTAGTATATTCAATCTCAATTTTTTGTTTGTGGCCCTGTAAGAAAGTCCCAATTTGCAGTTTGTGGCCCTGTAAGAATGTCCCAATTTTTAGTTTGCGGCCTTATAAGAATGCTGTTGCATTGTGAAAAGTATTTCTCATAAGAATCATTCTAAACATTTTTTT

Ace file of the UniGene sp_v1.1_unigene8492

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9T3V5_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	protein	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	EXTL2, alpha-1,4-N-acetylhexosaminyltransferase	IPR015338	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADK4

Fln msg: your sequence is longer than subject: 407 - 327

Fln protein: MHGMGFDIIIWMHNSYHSGDWIAVMDGDRVPSGDSTRRFLLGSLTLLFLGILVILVGVLLGVVRCVFPLSRCLGAGKRSDTLPFWTHPQFTSKLHKAFSRLNRSSSALRGRIRLNTCGGTLLLCFLFFLGAASICFTVRCFFGGNGAEEAYPVEGHYSQFTMLTMTYEARLWNLKMYIKHYSRCASVREIVVIWNKGQPPNPNDFDSTVPVRIRVEQKNSLNNRFKADPLIKTRAVLELDDDIMMTCNDVERGFKAWREHPDRLVGFYPRLIDGSPLKYRDEKYARTRKGYNMILTGAAFMDSQSAFQKYFSDEAKEGRDIVDKYFNCEDILMNFLLANESSSRTVEYVHPAWAIDTSKLSSAAISRNTQVHYRTRTHCLLKFSEIYGHLPLQKWEFDSRKDSWDL*

Protein Length: 408

Fln nts: ATGGGGAAGATGCTAGGAAGGAGCGGTCGGAAATAACACCCCAGGCTGGCATTTTACTGGATGTGTTTACATATTTTGACACCCATTAAGCTACTGTGAAAGCCCAAACGTCGTGACCTTGGCTGTCACTCAGGGTTACCGCAGATGGGTATTTTACTGGTCCACGAAGTTCGCAGGGTTTTATGCTGAACAGAGATCCAGTTTTTATGGTGTTGATCGTGCTCTCCCCGGTTAAATAGAGAAACCCAACTCATTTCTTGGGCACCCACGTTTCCTTTCATTTTGCATTGTGGTCAAACATTGTTGGCTAAACCGTCTTTGGGGATAAGCTTTCCTGCATATAAATTTTCACAGGTTAAGGCCTGTTCAGATACAGTTTTGGAGACATGCGCTGGATGTGATGGCCAGAGAGGATATGGGGGAGAAGGGATTGAAGCATTCGGTACCGAGCAGTTTGGGCGGCGGTGGATGTTGCGACATGAGTCTGAAATGTAGGTGCAGGTGGAGATGGGATTCTCCGGCTCGTACATGCGTGTTATCGCTTACCTTTATCTTTTTCCTAGCATCGTTTCTAATTTTTGGGGCTTTGGGGATGTTCTTTGCTTGGCTTACATTCTCTCCTTTCGAGAAACCTGCCATGAGCCCTTTTGGTTGTCGAGAGGATAATGAAGGATCATGGTCTATCGGAGTTTATCGTGGAAGAAATCCATTCGCATTGCATCCTATTGAGGAGGAAGGAATTTCGAACGACAGAAGCTCAGCCTGGCCTGTTGCTAATCCTGTATTTACATGTGCATCAGCTTCTGATAGCAGTCACCCGAGCAATTTTGTGGCAGATCCTTTTCTCTATATTCAGGGAGATGTTCTGTACCTGTTCTTTGAGACAAAGAATGCTTTAACAATGCAAGGAGACATTGGTGTGGCAAAAAGCATTGATCAAGGAGCCACCTGGCAACATTTAGGCATTGCTTTAGACGAAGAGTTTCATCTTTCTTATCCTTATGTTTTTGACTATGATGGGCAGATATACATGATGCCCGAGAGTAGTCAGAAAGGGAATCTTCGTCTTTACCGGGCATTGAATTTTCCTCTGGAGTGGAGACTCGAAAAGGTGCTTCTTAAGAAGCCACTTGTAGACACTTTCTTGATCCACTATAATGAAAATTACTGGCTTTTTGGATCAGATGTCAGTCGGTTTGGTGCAATAAAAAATGGAGAGCTGGAAATCTGGTATGCTAATTCACCTCTTGGCCCATGGAAACAACATAAGGGCAATCCTGTGCATAATTTTGATAAAAGCTTAGGTGCAAGGAATGCTGGAAGGCCTTTTGTGTATGATGGACATCTCTATCGCATGGGTCAAGATTGTGGTGACACTTATGGGCATCGTATACGAGCATTTAAAGTAGAAGTGCTCACCAAGGAAAAGTACAGAGAAGTAGAAGTTCCCCTTGGAATTGTTGAGTCTAGGAAAGGACGAA_-_ATGCATGGAATGGGATTCGATATCATCATTTGGATGCACAACAGCTACCACTCAGGAGATTGGATAGCAGTGATGGATGGAGACAGAGTTCCTTCTGGTGATTCAACAAGGAGGTTCCTACTTGGATCATTGACATTGTTATTTTTAGGAATACTGGTTATTCTTGTGGGTGTTCTACTGGGTGTGGTCAGATGTGTTTTTCCCCTAAGCAGGTGCCTAGGTGCTGGAAAGAGAAGTGACACTCTGCCATTCTGGACACATCCTCAATTTACATCAAAGCTGCACAAGGCATTTTCTCGCTTGAATAGAAGTAGCTCTGCCTTAAGGGGGAGAATCAGGTTAAACACATGTGGAGGCACATTGCTTCTGTGTTTTCTTTTTTTCCTTGGAGCAGCATCAATCTGTTTTACTGTACGGTGCTTTTTTGGGGGTAATGGCGCAGAAGAGGCATATCCTGTGGAAGGACATTATTCCCAGTTTACCATGCTTACTATGACTTATGAAGCAAGACTTTGGAATTTGAAGATGTATATCAAGCACTACTCTCGGTGTGCATCGGTTAGGGAGATAGTTGTTATTTGGAATAAGGGCCAGCCTCCAAATCCCAATGACTTTGATTCAACTGTACCAGTCCGTATAAGAGTTGAACAGAAAAATTCTTTAAACAACCGTTTCAAGGCTGATCCTCTGATTAAGACAAGAGCCGTACTTGAATTGGATGATGATATAATGATGACATGCAACGATGTTGAAAGAGGGTTCAAAGCATGGCGTGAACATCCTGATAGGCTTGTGGGGTTTTATCCCCGTCTTATAGATGGGAGTCCTTTAAAATACAGAGATGAAAAGTATGCCCGTACAAGGAAAGGTTATAATATGATTTTGACAGGGGCTGCATTCATGGATAGCCAGTCAGCATTTCAGAAGTACTTTAGTGATGAAGCAAAAGAGGGTAGAGATATCGTTGACAAGTACTTCAACTGTGAAGACATCCTAATGAATTTTCTTCTTGCAAATGAGAGCTCCTCAAGAACAGTTGAGTATGTTCATCCAGCATGGGCTATTGACACATCAAAGCTTTCCAGCGCAGCTATTAGCAGAAATACCCAGGTACATTACAGGACAAGGACGCATTGTTTGTTGAAGTTCTCTGAAATATATGGTCATCTTCCTCTACAGAAGTGGGAGTTTGACAGTCGGAAAGACAGTTGGGACTTATAG___TATAACAGGAAGAAGTTGAAAAACTGTATATTGTTGCAGCTATTTGTATCGCTTACTCAACCCTTGAAAATTTTTTGATGCACCATTTCTTTCTATGTACTGGACCACTTGTACATTAATCCAACCATCTTTTGCTCCTACTAGTATATTCAATCTCAATTTTTTGTTTGTGGCCCTGTAAGAAAGTCCCAATTTGCAGTTTGTGGCCCTGTAAGAATGTCCCAATTTTTAGTTTGCGGCCTTATAAGAATGCTGTTGCATTGTGAAAAGTATTTCTCATAAGAATCATTCTAAACATTTTTTT

Fln Alignment:

sp_v1.1_unigene8492___FTMLTMTYEARLWNLKMYIKHYSRCASVREIVVIWNKGQPPNPN-------------DFDSTVPVRIRVEQKNSLNNRFKADPLIKTRAVLELDDDIMMTCNDVERGFKAWREHPDRLVGFYPRL-------IDGSPLKYRDEKYARTRKGYNMILTGAAFMDSQSAFQKYFSDEAKEGRDIVDKYFNCEDILMNFLLANESSSRTVEYVHPAWAIDTSKLSSAAISRNTQVHYRTRTHCLLKFSEIYGHLPLQKWEFDS
D5ADK4______________YTVLINTWR-RNSVLKQSVAHYASCSSVDAIRVVWSENNPPSESLKAYLRKSVRSKAKSNHKPDFRFDLNEQDNLNNRFKPIEGLRTDAIFSIDDDVVVPCSTLEFAFSVWQSAPYSMVGFVPRMHWVDTKSADAIRYKYGGWWSVWWMGTYSMVLSKAAFF-HQKYLEMYTYHMPASIQEYVSRERNCEDIAMSFLVANATGAPPVWVKGKLFEIGSSGISS------LKGHSQRRNECLNDFVSLYGYMPLVASNFNA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
272		83		16	0.994512
273	83			16	0.994512
274		83	16		0.994512
276		16		83	0.994512
278			16	83	0.994512
279		83		16	0.994512
281	16			83	0.994512
282		16		83	0.994512
498		14		85	0.993533
1447		25		75	0.996473
1539	12	87			0.992554
1541		87	12		0.992554
1542	87		12		0.992554
1545	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain