SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8486

Length: 1326 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8486

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	radical SAM domain-containing protein	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	radical sam domain-containing protein	-	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A992

Fln msg:

Fln protein: MASSALNSVFDEAALHNEFKTRGINIRFIPVIWKYLLLNEDAEAIEVPGLSNAAYDVLRTKFTAMTSTVKATVQSADQSTTKLLIQLKNGSFIEAVIMSYDTRLGTYAGRPRPGGPRATLCVSSQVGCKMGCTFCATGSMGFKSNLSAGEIVEQLVHASRISQIRNVVFMGMGEPLNNYKSVVEAVRSMTGHCFQLAPRHITISTVGVIHCINNLKNDLPNVNLAVSLHAPLQEVRCQIMPAARAFPLGKLMDALRAYQEHSKRKIFIEYIMLDGINDQEQQAHLLGKLLEEYDVVVNLIPFNPIGSISKYRTSKKENVELFQKILRGVYNIRTTVRQEMGQDISGACGQLVVNLSDKKLPVKMEYSEKSDGIPDIEDLSILRS*

Protein Length: 386

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTTTGATTTCCCAATGAAAGGTTAAACGTATTCTGAAGAGGAAAGGTCTGCGCGAAGAACTGGGAAATCC_-_ATGGCTTCTTCGGCTCTCAACTCTGTATTCGACGAAGCAGCTCTTCATAACGAGTTTAAGACGCGAGGAATCAACATTCGTTTCATTCCCGTCATATGGAAGTATTTACTATTGAACGAAGACGCAGAAGCAATTGAGGTCCCTGGGTTATCTAATGCAGCTTACGATGTGCTGCGTACAAAGTTCACAGCCATGACATCTACTGTTAAAGCTACTGTTCAATCCGCGGATCAGTCCACCACTAAATTGCTCATTCAGCTTAAGAATGGATCTTTTATTGAAGCTGTGATCATGAGCTATGATACAAGATTGGGAACCTATGCTGGACGTCCTAGGCCTGGAGGTCCAAGGGCAACTTTGTGCGTATCTTCACAGGTAGGCTGCAAAATGGGTTGCACCTTTTGTGCCACTGGAAGTATGGGATTTAAGAGCAATCTCTCAGCAGGAGAAATAGTGGAGCAGCTGGTTCATGCATCTCGCATATCACAAATTCGCAATGTTGTTTTTATGGGAATGGGAGAACCTCTAAATAATTACAAGTCAGTTGTAGAAGCTGTTCGGTCTATGACAGGACACTGTTTCCAGCTAGCCCCACGGCATATCACTATCTCAACAGTGGGGGTTATTCACTGCATTAATAACTTAAAGAATGATTTGCCAAATGTAAATCTTGCGGTATCGCTTCATGCACCATTGCAAGAGGTCCGTTGTCAGATAATGCCAGCGGCACGTGCTTTTCCTCTTGGAAAGCTAATGGATGCACTACGTGCTTATCAAGAACACAGTAAACGCAAAATTTTTATAGAGTACATTATGCTGGACGGAATTAATGATCAAGAACAACAAGCACATTTGTTAGGAAAGTTGCTAGAAGAGTATGACGTTGTGGTAAATTTGATACCCTTTAATCCTATTGGCAGTATCAGCAAATATAGGACAAGTAAGAAGGAAAATGTAGAATTATTTCAAAAGATTCTTCGGGGTGTCTACAACATCAGGACAACAGTTCGTCAGGAAATGGGCCAGGACATAAGTGGTGCATGTGGTCAACTTGTCGTAAATCTTTCAGACAAGAAATTGCCTGTAAAGATGGAGTATAGTGAAAAGTCAGATGGAATCCCTGACATTGAAGATCTTTCCATTCTGAGGAGTTAA___CATGCTATGTATCAATCTCATGGAGATGGAGCTCATCTTCTTGTGCTTTGCTCCTTTTTCTGTTGTGGATTAATA

Fln Alignment:

sp_v1.1_unigene8486___MASSALNSVFDEAALHNEFKTRGINIRFIPVIWKYLLLNEDAEAIEVPGLSNAAYDVLRTKFTAMTSTVKATVQSADQSTTKLLIQLKNGSFIEAVIMSYDTRLGTYAGRPRPGGPRATLCVSSQVGCKMGCTFCATGSMGFKSNLSAGEIVEQLVHASRISQIRNVVFMGMGEPLNNYKSVVEAVRSMTGHCFQLAPRHITISTVGVIHCINNLKNDLPNVNLAVSLHAPLQEVRCQIMPAARAFPLGKLMDALRAYQEHSKRKIFIEYIMLDGINDQEQQAHLLGKLLEEYDVVVNLIPFNPIGSISKYRTSKKENVELFQKILRGVYNIRTTVRQEMGQDISGACGQLVVNLSDKKLPVKMEYSEKSDGIPDIEDLSILRS
D5A992______________MASSALHSVFDEATLRNEFKKRGINIRCIPVIWKYLLLNENAEVFEVPGLSNAAYDVLRSKFIAMTSTVKATVKSADQSTTKLLIQLQNGSFIETVIMSYDTRLGTYAGSPRPGGPRATLCVSSQVGCKMGCTFCATGSMGFKSNLSVGEIVEQLVHAARISQIRNVVFMGMGEPLNNYKSVVEAVRSMIGHCFQLAPRHITISAVGVIHCINNLKYDLPNVNLAVSLHAPLQEIRCQIMPAARAFPLGKLMDALHAYQEHSKRKIFIEYIMLDGINDQEQQAHLLGKLLEEYEVVVNLISFNPIGSISKYRTSKKENVELFQKILRGVYNIRTTVRQEMGQDISGACGQLVVNLSDKKSPAKMEYSGKPEGIPDIEDLSILRS

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
446	83		16		0.994512
460	14			14	0.984337
519	25		75		0.996473
942	88		11		0.923564
943	88			11	0.923564
945	88		11		0.923564
946	88			11	0.923564
951	88	11			0.923564
954			11	88	0.923564
958	88	11			0.923564
959	11		88		0.923564
960		11	88		0.923564
961	88			11	0.923564
962	88	11			0.923564
1051	90			10	0.90298
1052	90		10		0.90298
1053	90		10		0.90298
1054			10	90	0.90298
1235		75		25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain