SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8466

Length: 577 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene8466
TTTCACCGCAGCAAAGCTGACTAGATATCTGCGATGGCTAGGCCATGATACAAAGCACTTCAATGTTGGGAAGTATCGTCGCATTAAGCATGGTTTAAATCAGACTGCAGATTTTTTCCGAGCTGACAATCAAGAAGGTGTTGATGCCCGCAATGAGGTAGCAGCATTGGCAATGGAAGATATGCTTGCATGGATGCAGGAAGGTGGCCAGGTAGGCATCTTTGATGCAACAAATAGTACACGTCAGCGTCGAAAAATGTTAATGAAGATGGCTGAAGGAAAATGCAAGATTATATTTTTGGAGACAATATGTAATGATCCGGCTATAATTGATCGGAACATTCGCTTGAAAATTCAACAAAGTCCTGACTATGCAAATGTGTCAGATTTTGAAGCTGGAATGGAAGACTTTAAAACTCGACTTGCTAATTATGAGAAGGTTTATGAGCCAGTAGAAGAAGGTTCTTATATAAAAATGATAGACATGGTTAGTGGTCAGGGAGGACAAATACAAGTGAACAACATTAGTGGATATCTTCCTGGGCGAATAGTCTTCTTCTTGGTTAATACACATCTT

Ace file of the UniGene sp_v1.1_unigene8466 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F2KP; F2KP (FRUCTOSE-2,6-BISPHOSPHATASE); fructose-2,6-bisphosphate 2-phosphatase; K00900 6-phosphofructo-2-kinase [EC:2.7.1.105]; K01103 fructose-2,6-bisphosphatase [EC:3.1.3.46]	-	-	88%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	88%
Blast2go	6-phosphofructo-2-kinase family expressed	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fructose-2,6-bisphosphate 2-phosphatase.	EC:3.1.3.46	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fructose and mannose metabolism	00051		0.0	92%

Source	ECs	Term	Type	e value	Identity
AutoFact	6-phosphofructo-2-kinase.	EC:2.7.1.105	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Fructose and mannose metabolism	00051		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	fructose metabolic process	GO:0006000	Biological Process	92%
Blast2go	fructose-2,6-bisphosphate 2-phosphatase activity	GO:0004331	Molecular Function	92%
Blast2go	cytosol	GO:0005829	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Fructose-2,6-bisphosphatase	IPR003094	-	0.0	92%
Blast2go	6-phosphofructo-2-kinase	IPR013079	-	0.0	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HND2

Fln msg: Distance to subject end: 196 aas, your sequence is shorter than subject: 192 - 498

Fln protein: FTAAKLTRYLRWLGHDTKHFNVGKYRRIKHGLNQTADFFRADNQEGVDARNEVAALAMEDMLAWMQEGGQVGIFDATNSTRQRRKMLMKMAEGKCKIIFLETICNDPAIIDRNIRLKIQQSPDYANVSDFEAGMEDFKTRLANYEKVYEPVEEGSYIKMIDMVSGQGGQIQVNNISGYLPGRIVFFLVNTHL

Protein Length: 193

Fln nts: TTTCACCGCAGCAAAGCTGACTAGATATCTGCGATGGCTAGGCCATGATACAAAGCACTTCAATGTTGGGAAGTATCGTCGCATTAAGCATGGTTTAAATCAGACTGCAGATTTTTTCCGAGCTGACAATCAAGAAGGTGTTGATGCCCGCAATGAGGTAGCAGCATTGGCAATGGAAGATATGCTTGCATGGATGCAGGAAGGTGGCCAGGTAGGCATCTTTGATGCAACAAATAGTACACGTCAGCGTCGAAAAATGTTAATGAAGATGGCTGAAGGAAAATGCAAGATTATATTTTTGGAGACAATATGTAATGATCCGGCTATAATTGATCGGAACATTCGCTTGAAAATTCAACAAAGTCCTGACTATGCAAATGTGTCAGATTTTGAAGCTGGAATGGAAGACTTTAAAACTCGACTTGCTAATTATGAGAAGGTTTATGAGCCAGTAGAAGAAGGTTCTTATATAAAAATGATAGACATGGTTAGTGGTCAGGGAGGACAAATACAAGTGAACAACATTAGTGGATATCTTCCTGGGCGAATAGTCTTCTTCTTGGTTAATACACATCTT

Fln Alignment:

sp_v1.1_unigene8466___FTAAKLTRYLRWLGHDTKHFNVGKYRRIKHGLNQTADFFRADNQEGVDARNEVAALAMEDMLAWMQEGGQVGIFDATNSTRQRRKMLMKMAEGKCKIIFLETICNDPAIIDRNIRLKIQQSPDYANVSDFEAGMEDFKTRLANYEKVYEPVEEGSYIKMIDMVSGQGGQIQVNNISGYLPGRIVFFLVNTHL
B9HND2______________FTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGANQSADFFRADNPEGMEARNEVAALAMDDMIAWMQEGGQVGIFDATNSTRKRRNMLMKMAEGKCKIIFLETLCNDEHIIERNIRLKIQQSPDYAEQPDFEAGLQDFKSRLSNYEKVYEPVEEGSYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
233	12	87			0.992554
351	11		88		0.923564
455	83			16	0.994512
514	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain