SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8465

Length: 932 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8465 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pectin methylesterase [Picea abies]	-	-	4.0e-19	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	21 kda protein	-	-	5.43678e-21	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	5.43678e-21	54%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pectinesterase inhibitor	IPR006501	-	5.43678e-21	54%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
544	66	33			0.997452
566	25	75			0.996473
571		75	25		0.996473
613		25		75	0.996473
617	25		75		0.996473
671		83	16		0.994512
672	16		83		0.994512
690		66		33	1.0
730		25		75	0.996473
731		75		25	0.996473
749		25	75		0.996473
763	33		66		0.997452
778		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain