SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8462

Length: 2427 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8462
ATGGGGGTTGTGTCACATCGGGTCCTCTCAACCCCAAAGGGATGGAAGGTGAAGGGTATGACACAGTCGATTCGATTTAATCATCCTGTTTTAAAACTTACGGAAAAGTGCAAGAGTGTGCACATAAAATCCAGCGAATCTTGCAACCAGTCGTCGTCCAACACAGCAAGGTGGAGACAATTGCCAGAGGTTTTCGAAAATTGGGGACCTGAGTTGGGCAATATTGTTTGGTCTCAGTAGGGATACCTAAGTGCCTGTCCGGGTGGTGAAATCTGGGATGATTTCATAAAATCCATGAGCAGATTGATGTGCATGCCTTAATTGGCTTTTGAAACCAAAGATTTTTTAGTGACTTCAGCAGTCTTTGAATTGGAGAGATTTCAGAGAGACTGGTATTATAGAAGCAAGATGGTGCTACGAAGCGGCGATGAAGTTCGGCCAGCAGGATTCGCGTTCAATGAGGAGGGCAGTGCTCTCTGAAAATGAAGAGCAATGCTTGAAATAGAACTATGCCTTGTAAAATTGACAGGTTAGTGAAAATGCCGCTCGCCCTTAATTTGACATGCAGAAAATCAACCATGCTTGTAATTTAGTGGGCATTATGTTTGGAGTTCTTCTGTGAGACATTAAAGAATGCCCAGGGTAATTTATGCCAGCAAGTTTTGTCATTGATCAAAGGTGTTTGCATATACGTACCTCAGGAAAGGCACTTAACGCTGGACTTATTTATCCGCACCAACGTCACAAAATGGTCACAGATAAAGTGAAAGAGATAGGCAAAGTCAAGGGAGTGCCTGAGTGGCTCAATTGCTCAGTGTGGTCTTCAGGGCCTTCGGATTCTAGTTTTAACCGAAGGTCTAAGGAGAACGGCAACACTAATGCTGGGGGAGAAAACCGGCTACAGGAAAGTGCTGGTGCTATTATTGATGATCCACTCCGGGGAAATGCTTTTCGTGCTGGTGATGGTAGCAGTGCCGGAGACGGTACGAATAATGTCACAGATATACAGGAGCCCAATTTTATCTGGCCAGGTGATATGGTAAACAAGCCAAGCGTTCAAAGTAACTGTGAGATAATGGAGGAAAGCAGAAACGAAACAACATTGAAATTGGATGAAAGCTTAAATCAGAAATATGCTAGTTCAGCATCAAATCAAATTGATGATCCACTCGCCGACTCGTGGGCTCCTCCTGATTTAGATTTACCCTCTATTCCTGGACATTCATCTCCTCCACAATTTTCCAATTTGAAGGTTAACAAAAGTTTGTCGGATGTTTTTAGACGGGCACAATTTAACACCGAGCTTTCGAAGAAGGTCATAAGCCTACCCGAGTTGCAACGATTGGCTTCTCAAGGAATACCAGATGGTGGGGAACTCCGGCCAACTGTCTGGAAGCTACTCTTTGGATACTTACCAAGGAATCGTGATCTATGGGAGACCGAGTTACTCAAGAAGCGATCTGAGTATGCCATATTTAAAGAAGAGCTTCTCGTGAATCCTTCAGAAGTTACGAGGAGAATGGAGGAAGCCAGCCTACAATGCACTCAGGAAACTTCTGAAAATGAAAGTGGATTCCTCAGAAGATTTGAAATTACCCATGGAGAACATCCACTGAGCCTTGGGAGGAATAGTGTCTGGAACCAGTTCTTTCAGGATACAGAGACAGTCGAACAGATTGAACGTGATGTAAAACGTACCCATCCAGATATGCATTTTTTCTCTGGAGATTGTACATTTGCAATTGAAAATCAGGAAGCATTGAAGCGCATCTTATTAATTTTCGCAAAGTTGAACCCGGGGATTAGATATGTGCAAGGGATGAATGAAGTTGTAGCACCATTATTTTATGTGTTCAAAACAGATCCAGATGAAACTAATGCAGTCAATGCAGAAGCAGATACTTTTTTCTGTTTTGTTCAGTTGCTAAGTGATTTTCGGGATCACTTCTGTCAACAGTTGGATAATAGTGTTGTAGGTATTCGTTCTACAATGGCAAAATTGACAGCACTTCTGAAGAAGCATGATGAAGAGTTGTGGCGCCACCTTGATGTTACTACGAAGGTGAACCCTCAGTTTTATGCATTTAGGTGGATAACTCTACTACTGACTCAAGAGTTCAAATTTCCTGATAGTATACGTATTTGGGACTCACTTCTAAGCAATCCAGATGGTCCTCTGGAAATCCTGCTTCGCGTTTGCTGTGCTATGCTGATGTGCATAAGAAGCCGCTTATTGGGTGGCGATTTTACGATGAATCTTAAGCTACTGCAACATTATCCATATGTAGATATCAATCACTTGTTGCATATAGCAGAAGAATTGAGAATAAAATCCGTAGACTAGTCATGATTGCCTTGTATTGTAAACATGTCGCCCCTTAATTTTATATACAGAGGAAATCTAATGATTTTGTTTGGAGAACACTT

Ace file of the UniGene sp_v1.1_unigene8462

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RabGAP/TBC domain-containing protein	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8J2

Fln msg: your sequence is longer than subject: 565 - 209

Fln protein: MPASFVIDQRCLHIRTSGKALNAGLIYPHQRHKMVTDKVKEIGKVKGVPEWLNCSVWSSGPSDSSFNRRSKENGNTNAGGENRLQESAGAIIDDPLRGNAFRAGDGSSAGDGTNNVTDIQEPNFIWPGDMVNKPSVQSNCEIMEESRNETTLKLDESLNQKYASSASNQIDDPLADSWAPPDLDLPSIPGHSSPPQFSNLKVNKSLSDVFRRAQFNTELSKKVISLPELQRLASQGIPDGGELRPTVWKLLFGYLPRNRDLWETELLKKRSEYAIFKEELLVNPSEVTRRMEEASLQCTQETSENESGFLRRFEITHGEHPLSLGRNSVWNQFFQDTETVEQIERDVKRTHPDMHFFSGDCTFAIENQEALKRILLIFAKLNPGIRYVQGMNEVVAPLFYVFKTDPDETNAVNAEADTFFCFVQLLSDFRDHFCQQLDNSVVGIRSTMAKLTALLKKHDEELWRHLDVTTKVNPQFYAFRWITLLLTQEFKFPDSIRIWDSLLSNPDGPLEILLRVCCAMLMCIRSRLLGGDFTMNLKLLQHYPYVDINHLLHIAEELRIKSVD*

Protein Length: 566

Fln nts: ATGGGGGTTGTGTCACATCGGGTCCTCTCAACCCCAAAGGGATGGAAGGTGAAGGGTATGACACAGTCGATTCGATTTAATCATCCTGTTTTAAAACTTACGGAAAAGTGCAAGAGTGTGCACATAAAATCCAGCGAATCTTGCAACCAGTCGTCGTCCAACACAGCAAGGTGGAGACAATTGCCAGAGGTTTTCGAAAATTGGGGACCTGAGTTGGGCAATATTGTTTGGTCTCAGTAGGGATACCTAAGTGCCTGTCCGGGTGGTGAAATCTGGGATGATTTCATAAAATCCATGAGCAGATTGATGTGCATGCCTTAATTGGCTTTTGAAACCAAAGATTTTTTAGTGACTTCAGCAGTCTTTGAATTGGAGAGATTTCAGAGAGACTGGTATTATAGAAGCAAGATGGTGCTACGAAGCGGCGATGAAGTTCGGCCAGCAGGATTCGCGTTCAATGAGGAGGGCAGTGCTCTCTGAAAATGAAGAGCAATGCTTGAAATAGAACTATGCCTTGTAAAATTGACAGGTTAGTGAAAATGCCGCTCGCCCTTAATTTGACATGCAGAAAATCAACCATGCTTGTAATTTAGTGGGCATTATGTTTGGAGTTCTTCTGTGAGACATTAAAGAATGCCCAGGGTAATTT_-_ATGCCAGCAAGTTTTGTCATTGATCAAAGGTGTTTGCATATACGTACCTCAGGAAAGGCACTTAACGCTGGACTTATTTATCCGCACCAACGTCACAAAATGGTCACAGATAAAGTGAAAGAGATAGGCAAAGTCAAGGGAGTGCCTGAGTGGCTCAATTGCTCAGTGTGGTCTTCAGGGCCTTCGGATTCTAGTTTTAACCGAAGGTCTAAGGAGAACGGCAACACTAATGCTGGGGGAGAAAACCGGCTACAGGAAAGTGCTGGTGCTATTATTGATGATCCACTCCGGGGAAATGCTTTTCGTGCTGGTGATGGTAGCAGTGCCGGAGACGGTACGAATAATGTCACAGATATACAGGAGCCCAATTTTATCTGGCCAGGTGATATGGTAAACAAGCCAAGCGTTCAAAGTAACTGTGAGATAATGGAGGAAAGCAGAAACGAAACAACATTGAAATTGGATGAAAGCTTAAATCAGAAATATGCTAGTTCAGCATCAAATCAAATTGATGATCCACTCGCCGACTCGTGGGCTCCTCCTGATTTAGATTTACCCTCTATTCCTGGACATTCATCTCCTCCACAATTTTCCAATTTGAAGGTTAACAAAAGTTTGTCGGATGTTTTTAGACGGGCACAATTTAACACCGAGCTTTCGAAGAAGGTCATAAGCCTACCCGAGTTGCAACGATTGGCTTCTCAAGGAATACCAGATGGTGGGGAACTCCGGCCAACTGTCTGGAAGCTACTCTTTGGATACTTACCAAGGAATCGTGATCTATGGGAGACCGAGTTACTCAAGAAGCGATCTGAGTATGCCATATTTAAAGAAGAGCTTCTCGTGAATCCTTCAGAAGTTACGAGGAGAATGGAGGAAGCCAGCCTACAATGCACTCAGGAAACTTCTGAAAATGAAAGTGGATTCCTCAGAAGATTTGAAATTACCCATGGAGAACATCCACTGAGCCTTGGGAGGAATAGTGTCTGGAACCAGTTCTTTCAGGATACAGAGACAGTCGAACAGATTGAACGTGATGTAAAACGTACCCATCCAGATATGCATTTTTTCTCTGGAGATTGTACATTTGCAATTGAAAATCAGGAAGCATTGAAGCGCATCTTATTAATTTTCGCAAAGTTGAACCCGGGGATTAGATATGTGCAAGGGATGAATGAAGTTGTAGCACCATTATTTTATGTGTTCAAAACAGATCCAGATGAAACTAATGCAGTCAATGCAGAAGCAGATACTTTTTTCTGTTTTGTTCAGTTGCTAAGTGATTTTCGGGATCACTTCTGTCAACAGTTGGATAATAGTGTTGTAGGTATTCGTTCTACAATGGCAAAATTGACAGCACTTCTGAAGAAGCATGATGAAGAGTTGTGGCGCCACCTTGATGTTACTACGAAGGTGAACCCTCAGTTTTATGCATTTAGGTGGATAACTCTACTACTGACTCAAGAGTTCAAATTTCCTGATAGTATACGTATTTGGGACTCACTTCTAAGCAATCCAGATGGTCCTCTGGAAATCCTGCTTCGCGTTTGCTGTGCTATGCTGATGTGCATAAGAAGCCGCTTATTGGGTGGCGATTTTACGATGAATCTTAAGCTACTGCAACATTATCCATATGTAGATATCAATCACTTGTTGCATATAGCAGAAGAATTGAGAATAAAATCCGTAGACTAG___TCATGATTGCCTTGTATTGTAAACATGTCGCCCCTTAATTTTATATACAGAGGAAATCTAATGATTTTGTTTGGAGAACACTT

Fln Alignment:

sp_v1.1_unigene8462___MHFFSGDCTFAIENQEALKRILLIFAKLNPGIRYVQGMNEVVAPLFYVFKTDPDETNAVNAEADTFFCFVQLLSDFRDHFCQQLDNSVVGIRSTMAKLTALLKKHDEELWRHLDVTTKVNPQFYAFRWITLLLTQEFKFPDSIRIWDSLLSNPDGPLEILLRVCCAMLMCIRSRLLGGDFTMNLKLLQHYPYVDINHLLHIAEELRI
D5A8J2______________MHFFSGDSAFAIKNQEALKRILLIFAKLNPGIRYVQGMNEVVSPLFYVFKTDPDESNAANAEADTFFCFVQLLSDFRDHFCQQLDNSVVGIRSTMAKLTALLKKHDEELWRHLDVTTKVNPQFYAFRWITLLLTQEFDFPDSLRIWDSLLSNPDGPLEILLRVCCAMLMCIRSRLLGGDFTMNLKLLQHYPYVDTNHLLHIAEELRI

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
452		33		66	1.0
488			83	16	0.994512
743		80		20	0.995493
747	80		20		0.995493
748	80	20			0.995493
750	80		20		0.995493
755		80	20		0.995493
760	80		20		0.995493
761		16		83	0.994512
762	83	16			0.994512
821	16		83		0.994512
975	12		87		0.992554
1046		66	33		0.997452
1336		11		88	0.923564
1345		10		90	0.90298
1347			90	10	0.90298
1349			10	90	0.90298
1351		90	10		0.90298
1352	10			90	0.90298
1354	90	10			0.90298
1355	90			10	0.90298
1356			90	10	0.90298
1358	90		10		0.90298
1359	90	10			0.90298
1361	90		10		0.90298
1362		90		10	0.90298
1365		10	90		0.90298
1368		10	90		0.90298
1369	10		90		0.90298
1410		11		88	0.923564
1451	10	90			0.90298
1452	90			10	0.90298
1453	90			10	0.90298
1465	90		10		0.90298
1613	16	16			0.988813
1664	83		16		0.994512
1686			25	75	0.996473
1692	75			25	0.996473
1693	75	25			0.996473
1694	75		25		0.996473
1695	75	25			0.996473
1696	25	75			0.996473
1699	75		25		0.996473
1701	25	75			0.996473
1702		75	25		0.996473
1703	60	20		20	0.99255
1704			25	75	0.996473
1705	25	75			0.996473
1709	75		25		0.996473
1710		25		75	0.996473
1711	75	25			0.996473
1944			40	60	1.0
2001		80	20		0.995493
2030	20		80		0.995493
2191		87		12	0.992554
2192		87		12	0.992554
2387	83	16			0.994512
2388	83		16		0.994512
2389		16		83	0.994512
2390	16			83	0.994512
2391			16	83	0.994512
2393	83		16		0.994512
2394	16			83	0.994512
2395	83		16		0.994512
2402	80		20		0.995493
2403		20	80		0.995493
2404		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain