SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8441

Length: 3260 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8441
ATGGGAGATTTCCCACACCCTATTCGAATTTCAAACCCCAAAATCTCTGTCCTTGTGTTCCTCCTCATTCTTCCGCAATTGCCGTTAAGACGGAAGGAGGGCCCTGCCTGCGCGCTCCACACTGAAAACAACAACACAAAAAACGCTCTAAATTTAACAACCCCGTCTACCTCGCCGTCTCGCTCGCTCCAATTGCCTTCCGTGTAAAGCAGGCCTCCAGATTTTTCCCGTCAAGAGACGGCATAGTTTCCCCCGGCATTCACCTTCTTCCGTACATGGAGCGTTTCGCCCTGCTTTCTGCCGGCCGCGGGCGATAATGCTCGGGTTTGGACCCAGTTTTTGATTTCCGTTAGGTTTTATAATTTTATCAAAACCCTCGTCTATTGGATTCTTGCTGTTGGTATTCTTGTTCCGGTATGGTGCTTGCAGGAGATGGCATTGCGGCCACAGAAGAAGGGGAGGACTGGCTTCATTTTGATTTCCTTTAGTGCGGTGCTTTCTTCTTGCCAGAGGACGAAAGAAAGGCTTTTCTGGAGAGTTTGTGTTTAAAGGTTCACTTTCGAGGAGCTAAAATGGGGTGCTTTTTCGGATGCTTTCGTGTTAAAGATAAGGAGCGACCGCGCGGCAACGTTTCAGCTACTCTGCCGCCTGTCAAGAGCAGGGAACTTCTGATTGCAAATAACCAGTCTCAGTCTGGCCGTTTCAGTGGTTCTTCCCAAGACACTGTTGGATCTTCACCCTTCCTCACAGCATTATCAGAGTGCACAGAACGAAAGAAAACAGAAAATTTATGTCGAAGGAATAATAGCATAAAGTGGACATCGCAGTTGATTGTCCCAGCCGAAGTTTCTGCTGTTCCAGAGCCCAAGGTTTCATTAAATGGTCCGAGTCCTGAATTTGTCCCACCTGGCACGCCTCCCCGTAGTTTGGCGAAGGCTAGGAATCTTCGCGAAGAGGAGGACAACAGGGAGTTCAATGACGAGGTGAAGTACCTTAAGTCATGTGGAACACTTCTGAGAACTCCATCTGAGATTCGTGAAGCATCTATAAGGCAAAGAACACCATTTGAATATGATAAGAATGTCAATTCTGAATGGCACTCATGGTTTCCTCATCCTCCAGTCCGTGAAATTCAGTGGGATGGTCCACCTGGAGAGTCTCCCACACCACCTGCTCATCTGCATGAGGAACTTTGCAAGATTCCCACTCCAAATTCGATATTGCATGTTCCAAAGCAGCCTTCTACAAGATTTGAAGATAAAATGCAGCAAAACGAGGATAATGAATATACCAAACAAGATTATGGACATTTAGGAAACAGAGAAGAGAAGACTGCACACGGGGATGTTAAATCCTCTTCATCAGCAGGGTCCTACTTTGTTAGTGAAAATGAAGATCATTTCCAACCAATAAGTCCTATGTCATCTAAATTGCTTGAACCTATAGTTCATAAGCACTCGAGATATGCTGATTACCTGACTGTTGAAGAGGACAGTGATTCGTTCTCGGATGCAGGGTCAATTGCATCCCGTGATTCAGCAGCCAAGCATGAGAACATAAGTTTCAATCAGTTTGATTCTGAAGCTAGTGTAGAACCACAAACCCCTCCTCTCTTCAAGTCAACTTATTCCCCACAGTCTACTCCTTTAAGGCTTACAGGTAACATGAACACTCCATGGACAGGATGTGCAAAGACTATCGAGAATGCAGGTGTGAACAAAAATGCTAGAATCCGTTCACAATATGTATATCCTGTTCTAAATCCTGTTGAAAACCTATCACAATGGAAGGAACTTAAAAAAGGGGTTCTCAAGGATTGTGAGCCAAAGAGCAAATCATGGTCTGATATTCTACAAACACCAGGATCAAAAGGGGCAGCCACAGATAATGGTACCCCAAAACTTCCTTGTAGCTATTCAATCTCAAGAGCAGATTCAATGAGTAAAGAGAATTTTCTGAGTGAAGAGGAGGTTAAACTCACGCCTGATTCTTTGGATGTAGTTGATGAACTGAGCCAAAAGAGAAAGCATATTACCATCACTCCTGACCCAGTTTCTAAAACACCTAAATCAGCAGGGCAATTTCATCACATCCCTGAGGAGACACCACCATCACGTATACTGCACGTGGATTCTAGCCTATCTCACTGGCTGAAAACACCACCAATTGAAGACGGCAATGTTGGACAGTCTAAAAGGACGCTGGGACCATATGCTAATCAACAGTTTGAAACTCCAAACTCAGAGGCTAAAACATCATGCATCTTGTCACCTTCCAGTTCAAGCCCGAGAGTTCGACAGATGCTAAGCTCACCTTCAAGTAAAAGTATTGACGACAAACCTATATTAGGAGCCTTATCGATTCAGCAGTTACAATATACATCCCCGGCAAGGTCATCACCATCAAGTAAAACTAGTGGAGATGATGACAGACCTATTATAGGGATGGTTGCAGCTCACTGGAATGATAAGCAAAGTACGTCTCCCAAGTGGTGGGATGGAAAGGGAATACCAAACTCAACAAATAAATATAAAGAGGATCAGAAGGTAAGTTGGCACACTACACCTTTCGAAGAGAGATTAGAGAAGGCGCTCTCCAATGAAGGCGGATTCGAGAGGAAAACTTTTTCTGGAAAACCTATAAATTTTGATGAATGCGAGGAAAGTGATACTGCAGCATCATAGCCGGTTGTTCATTAGCTACTGTGAGCATATGTAGCTATAGTCCATAGTTTTCATACGTTGTCCATCATGTTTGCACGTGATCTCAATCTCTTGACTGGAATGGAAATTTCACAATTTCTCTGAAGACTGTATTGAAACGAGAGGTTTCAAAGAGAGGCCTTTCAAGGTTGAACCGCTGGATTGTGATAAGGGCTGTAGCATTATATTTTCGAGGTAATTCTATAGGTTGTATATAGAGAAGATCTCTTTTCTCTATGGAGTTTTCTTTGTAATTGTCACCTGTAATAATGGCAGTTCTATTTCAATTTTACATTCAAGGTATTTTTTTCCCATTCAACCAGCAATGCCAGTGCTTCCTCCATTTGTGCATAATTTGGAAGCTACTTCTGCTTACTTTACTCTCTCTTTTCTGTATGTTTTAGTTTCCTGCACTCATAAACCAGTCAATGAGTTTAAATGTTCATTTGAGAGTAGGTTGCCCAGCTTTTATCAGTATAGCATATGTTTCAGTTTTGCAAGTCTTGTATTTCAGTTTTGCAAGTCTTGTATTTCGTAAATGCAAGCGAAATTTTTAAG

Ace file of the UniGene sp_v1.1_unigene8441

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	uncharacterized protein	-	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRA1

Fln msg:

Fln protein: MGCFFGCFRVKDKERPRGNVSATLPPVKSRELLIANNQSQSGRFSGSSQDTVGSSPFLTALSECTERKKTENLCRRNNSIKWTSQLIVPAEVSAVPEPKVSLNGPSPEFVPPGTPPRSLAKARNLREEEDNREFNDEVKYLKSCGTLLRTPSEIREASIRQRTPFEYDKNVNSEWHSWFPHPPVREIQWDGPPGESPTPPAHLHEELCKIPTPNSILHVPKQPSTRFEDKMQQNEDNEYTKQDYGHLGNREEKTAHGDVKSSSSAGSYFVSENEDHFQPISPMSSKLLEPIVHKHSRYADYLTVEEDSDSFSDAGSIASRDSAAKHENISFNQFDSEASVEPQTPPLFKSTYSPQSTPLRLTGNMNTPWTGCAKTIENAGVNKNARIRSQYVYPVLNPVENLSQWKELKKGVLKDCEPKSKSWSDILQTPGSKGAATDNGTPKLPCSYSISRADSMSKENFLSEEEVKLTPDSLDVVDELSQKRKHITITPDPVSKTPKSAGQFHHIPEETPPSRILHVDSSLSHWLKTPPIEDGNVGQSKRTLGPYANQQFETPNSEAKTSCILSPSSSSPRVRQMLSSPSSKSIDDKPILGALSIQQLQYTSPARSSPSSKTSGDDDRPIIGMVAAHWNDKQSTSPKWWDGKGIPNSTNKYKEDQKVSWHTTPFEERLEKALSNEGGFERKTFSGKPINFDECEESDTAAS*

Protein Length: 705

Fln nts: ATGGGAGATTTCCCACACCCTATTCGAATTTCAAACCCCAAAATCTCTGTCCTTGTGTTCCTCCTCATTCTTCCGCAATTGCCGTTAAGACGGAAGGAGGGCCCTGCCTGCGCGCTCCACACTGAAAACAACAACACAAAAAACGCTCTAAATTTAACAACCCCGTCTACCTCGCCGTCTCGCTCGCTCCAATTGCCTTCCGTGTAAAGCAGGCCTCCAGATTTTTCCCGTCAAGAGACGGCATAGTTTCCCCCGGCATTCACCTTCTTCCGTACATGGAGCGTTTCGCCCTGCTTTCTGCCGGCCGCGGGCGATAATGCTCGGGTTTGGACCCAGTTTTTGATTTCCGTTAGGTTTTATAATTTTATCAAAACCCTCGTCTATTGGATTCTTGCTGTTGGTATTCTTGTTCCGGTATGGTGCTTGCAGGAGATGGCATTGCGGCCACAGAAGAAGGGGAGGACTGGCTTCATTTTGATTTCCTTTAGTGCGGTGCTTTCTTCTTGCCAGAGGACGAAAGAAAGGCTTTTCTGGAGAGTTTGTGTTTAAAGGTTCACTTTCGAGGAGCTAAA_-_ATGGGGTGCTTTTTCGGATGCTTTCGTGTTAAAGATAAGGAGCGACCGCGCGGCAACGTTTCAGCTACTCTGCCGCCTGTCAAGAGCAGGGAACTTCTGATTGCAAATAACCAGTCTCAGTCTGGCCGTTTCAGTGGTTCTTCCCAAGACACTGTTGGATCTTCACCCTTCCTCACAGCATTATCAGAGTGCACAGAACGAAAGAAAACAGAAAATTTATGTCGAAGGAATAATAGCATAAAGTGGACATCGCAGTTGATTGTCCCAGCCGAAGTTTCTGCTGTTCCAGAGCCCAAGGTTTCATTAAATGGTCCGAGTCCTGAATTTGTCCCACCTGGCACGCCTCCCCGTAGTTTGGCGAAGGCTAGGAATCTTCGCGAAGAGGAGGACAACAGGGAGTTCAATGACGAGGTGAAGTACCTTAAGTCATGTGGAACACTTCTGAGAACTCCATCTGAGATTCGTGAAGCATCTATAAGGCAAAGAACACCATTTGAATATGATAAGAATGTCAATTCTGAATGGCACTCATGGTTTCCTCATCCTCCAGTCCGTGAAATTCAGTGGGATGGTCCACCTGGAGAGTCTCCCACACCACCTGCTCATCTGCATGAGGAACTTTGCAAGATTCCCACTCCAAATTCGATATTGCATGTTCCAAAGCAGCCTTCTACAAGATTTGAAGATAAAATGCAGCAAAACGAGGATAATGAATATACCAAACAAGATTATGGACATTTAGGAAACAGAGAAGAGAAGACTGCACACGGGGATGTTAAATCCTCTTCATCAGCAGGGTCCTACTTTGTTAGTGAAAATGAAGATCATTTCCAACCAATAAGTCCTATGTCATCTAAATTGCTTGAACCTATAGTTCATAAGCACTCGAGATATGCTGATTACCTGACTGTTGAAGAGGACAGTGATTCGTTCTCGGATGCAGGGTCAATTGCATCCCGTGATTCAGCAGCCAAGCATGAGAACATAAGTTTCAATCAGTTTGATTCTGAAGCTAGTGTAGAACCACAAACCCCTCCTCTCTTCAAGTCAACTTATTCCCCACAGTCTACTCCTTTAAGGCTTACAGGTAACATGAACACTCCATGGACAGGATGTGCAAAGACTATCGAGAATGCAGGTGTGAACAAAAATGCTAGAATCCGTTCACAATATGTATATCCTGTTCTAAATCCTGTTGAAAACCTATCACAATGGAAGGAACTTAAAAAAGGGGTTCTCAAGGATTGTGAGCCAAAGAGCAAATCATGGTCTGATATTCTACAAACACCAGGATCAAAAGGGGCAGCCACAGATAATGGTACCCCAAAACTTCCTTGTAGCTATTCAATCTCAAGAGCAGATTCAATGAGTAAAGAGAATTTTCTGAGTGAAGAGGAGGTTAAACTCACGCCTGATTCTTTGGATGTAGTTGATGAACTGAGCCAAAAGAGAAAGCATATTACCATCACTCCTGACCCAGTTTCTAAAACACCTAAATCAGCAGGGCAATTTCATCACATCCCTGAGGAGACACCACCATCACGTATACTGCACGTGGATTCTAGCCTATCTCACTGGCTGAAAACACCACCAATTGAAGACGGCAATGTTGGACAGTCTAAAAGGACGCTGGGACCATATGCTAATCAACAGTTTGAAACTCCAAACTCAGAGGCTAAAACATCATGCATCTTGTCACCTTCCAGTTCAAGCCCGAGAGTTCGACAGATGCTAAGCTCACCTTCAAGTAAAAGTATTGACGACAAACCTATATTAGGAGCCTTATCGATTCAGCAGTTACAATATACATCCCCGGCAAGGTCATCACCATCAAGTAAAACTAGTGGAGATGATGACAGACCTATTATAGGGATGGTTGCAGCTCACTGGAATGATAAGCAAAGTACGTCTCCCAAGTGGTGGGATGGAAAGGGAATACCAAACTCAACAAATAAATATAAAGAGGATCAGAAGGTAAGTTGGCACACTACACCTTTCGAAGAGAGATTAGAGAAGGCGCTCTCCAATGAAGGCGGATTCGAGAGGAAAACTTTTTCTGGAAAACCTATAAATTTTGATGAATGCGAGGAAAGTGATACTGCAGCATCATAG___CCGGTTGTTCATTAGCTACTGTGAGCATATGTAGCTATAGTCCATAGTTTTCATACGTTGTCCATCATGTTTGCACGTGATCTCAATCTCTTGACTGGAATGGAAATTTCACAATTTCTCTGAAGACTGTATTGAAACGAGAGGTTTCAAAGAGAGGCCTTTCAAGGTTGAACCGCTGGATTGTGATAAGGGCTGTAGCATTATATTTTCGAGGTAATTCTATAGGTTGTATATAGAGAAGATCTCTTTTCTCTATGGAGTTTTCTTTGTAATTGTCACCTGTAATAATGGCAGTTCTATTTCAATTTTACATTCAAGGTATTTTTTTCCCATTCAACCAGCAATGCCAGTGCTTCCTCCATTTGTGCATAATTTGGAAGCTACTTCTGCTTACTTTACTCTCTCTTTTCTGTATGTTTTAGTTTCCTGCACTCATAAACCAGTCAATGAGTTTAAATGTTCATTTGAGAGTAGGTTGCCCAGCTTTTATCAGTATAGCATATGTTTCAGTTTTGCAAGTCTTGTATTTCAGTTTTGCAAGTCTTGTATTTCGTAAATGCAAGCGAAATTTTTAAG

Fln Alignment:

sp_v1.1_unigene8441___MGCFFGCFRVKDKERPRGNVSATLPPVKSRELLIANNXXXXXXXXXXXXDTVGSSPFLTALSECTERKKTENLCRRNNSIKWTSQLIVPAEVSAVPEPKVSLNGPSPEFVPPGTPPRSLAKAXXXXXXXXXXXXXXXVKYLKSCGTLLRTPSEIREASIRQRTPFEYDKNVNSEWHSWFPHPPVREIQWDGPPGESPTPPAHLHEELCKIPTPNSILHVPKQPSTRFEDKMQQNEDNEYTKQDYGHLGNREEKTAHGDVKSSSSAGSYFVSENEDHFQPISPMSSKLLEPIVHKHSRYADYLTVEEDSDSFSDAGSIASRDSAAKHENISFNQFDSEASVEPQTPPLFKSTYSPQSTPLRLTGNMNTPWTGCAKTIENAGVNKNARIRSQYVYPVLNPVENLSQWKELKKGVLKDCEPKSKSWSD----------ILQTPGSKGAATDNGTPKLPCSYSISRADSMSKENFLSEEEVKLTPDSLDVVDELSQKRKHITITPDPVSKTPKSAGQFHHIPEETPPSRILHVDSSLSHWLKTPPIEDGNVGQSKRTLGPYANQQFETPNSEAKTSCILXXXXXXXRVRQMLXXXXXXXXXXXXXLGALSIQQLQYXXXXXXXXXXXXXGDDDRPIIGMVAAHWNDKQSTSPKWWDGKGIPNSTNKYKEDQKVSWHTTPFEERLEKALSNEGGFERKTFSGKPINFDECEESDTAAS
B8LRA1______________MGCFFGCFRVKDKERPRGSVSATLPPVKSREHLIANNQSQSGRFHGSSQDIVGSSPFLTAFSECTERKKTENLCRRNNSIKWTAQLIAPAEVPAVPESKDSLNGPSLEFVPPGTPPRSLATARNLQEEEENGEFNDEVKYLKSCGTLLRTPSEIREASARQRVPFEYDKNVNSEWHSWFPHPPVRKIQWDGPPGESPTPPAHLHEDLCKIPTPDSILHVPKQRSTRFEDKMPQSEDKKYTRQDSGHFGSREDKTAHRDVKSSSSAGSYFFSENEDHLQPISPMSSKLLEPIVHKPSRYGEYLTVEEDSDSFSDAGSIASRDSAAKNENISFNQFDSEASLEPQTPPLFKSTYSPQSTPLRLTDNMNTPWAGCAKTLENAGVNKNARIRSQYVYPVLNPVENLSQWKELKKGILKDCEPKSKSWSERSAMTENQRVVLQTPGSRGVGTDNGTPKLSCSYSISRADSMSKENLLSEEEVKLMSDGLDVIDESSQKRKHIPTTPDPVFKTPKSTGQFHHFPEETPLSRVLHVDSSLSHWLKTPQIEDGNVGQSKKMPEPYINQKVETPNSEAKTSC-LSPSSSSPRVLRMQSSPSSKNIDDRPILGALSIQHLQY-TSPARSPSSKTSGDDDRPILGMVAAHWNDKQSTSPKWWDGKGIPNSTNKYKEDQKVSWHTTPFEERLEKALSNEGGFERKTFSGKPINFEECEESDTAAS

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
646		87		12	0.992554
651	12			87	0.992554
1231		75		25	0.996473
1248	81		18		0.999994
1602	87	12			0.992554
1640			88	11	0.923564
1643		11		88	0.923564
1645		88	11		0.923564
1647		88	11		0.923564
1648	11	88			0.923564
1649			11	88	0.923564
1651			11	88	0.923564
1657		10		90	0.90298
1995	14			85	0.993533
2000			14	85	0.993533
2228		12	87		0.992554
2330	85			14	0.993533
2387	16	83			0.994512
2475		66	33		0.997452
2522	80		20		0.995493
2523	80			20	0.995493
2524		80	20		0.995493
2526	80	20			0.995493
2527	80			20	0.995493
2529	80		20		0.995493
2530	80		20		0.995493
2531	80	20			0.995493
2533	80		20		0.995493
2537	80			20	0.995493
2538	80	20			0.995493
2539	20		80		0.995493
2546	77	22			0.999999
2548	77			22	0.999999
2549	77	22			0.999999
2551			77	22	0.999999
2552			22	77	0.999999
2554	77	22			0.999999
2555		22	77		0.999999
2561	77			22	0.999999
2562		77	22		0.999999
2563	77			22	0.999999
2568	77			22	0.999999
2570	22	77			0.999999
3187	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain