SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8433

Length: 2182 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8433
CGTCGTGACCTTGGCTGTCACTCAATTTTTTTCTCCATCTGTTTGGTTTCTTCGCCTTCGCTTGAACTGGATTTCACCGTGGTTCTGATCTGGGTTTTCAATTCTCTTTCGTGGGCACTTGGTTTTTTCACAATGAACCCGTCCAAGCAAACCAAAATTGGAATCGAAAATAGGGCGGCGAAGCCCAACAGGCCCATGGCTAGCAAAGTGGTGACACGGGCCGAAATGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTAGGGTGCCATGCTTCAAAACCCAATGGGGGTGATGAGATCAAGCTAGAGAAATCTAGGAAGCAGATTCAGCTTGCTGATAAGCCAATGCCAAGGAGGTTTGGTCTCGATGCCAAGAATACGAGTGCTACAACAAAGTCATCGTCCATGCCGCTGGGGCCACAGAGGAACAAAGATGAAAAGGGAAGCATTAGATCAACTTTGGTTTCAAAATCCAAGCATGTAGCAGGTTCAGGAAAAGCACCTGGGATTTCCAATGTTGGACCCTCACATACACGTGAATCAGTTTCAGGCAAACTGCCCAGGGTTTCGAATGTTGAAGTCTCAAGTAATGATCCATCGAGTTCAAGGATACAACGCAGGCCTTCTACTAGTCTATCTGGTAAAAACATTTCAGCTTCAGGGAGGTCTTCTACTACTGGCCTCTCAGGTAAACACACTTCAGCTTCAGGGAGGCCTTCCACTACTGTTCTTTCTAGCAAATGTACTTCAGCTTCAGGGAGACCACCAAGGCCTTCAAATGTTGACATCTCAGGCAAAGCCGCTTCAAATGCATCCAAGTCTAGGTTCTGCCCACCTGAAGCTAAAGGTGTCTCAAGAAGAATGCCAATGACTGATGCATCAAAAAGGAAGACAAGGCTTCCACGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGATGTCATGGAAGAGGAAGGGAACTTGCCCAACATTGACGAAGCAGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGTAACAATCTCTCATCAAACTACATGTCAAGCCAAGTTGATATCAACCAGAAGATGCGGGAAATACTTATTGACTGGCTGATTGATGTGCATCTAAAATTTGACTTAATGCATGAGACACTTTTTCTCATGATTAACCTGATTGATAGATTTCTTTCTGTGGTGTACACTATTACGAGAAAGGATGTTCAACTAGTGGGGTTAACTGCCATGCTAGTTGCTGCCAAATATGAAGAGATTTGGGCTCCCAAGGTTAAGGAACTGATTACAATATCAAACAATGTTTACACACGTGGTGAATTTCTCTCCATGGAGAAATTGATGCTCAACAAATTAAGATTCAATTTGGCTGTACCAACTCCCTTTGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAGGCTGATAAACAGCTTGAGTTGCTGGCATTCTATCTTCTTGAACTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAACCATCTATGCTGGCAGCCTCAGCTATATACATGGCACAACACATCCTGCAAAGGATGCCAGCTTGGACAAGACTGCTTCAGAAACATGCACACTATAAAGAATCAGAACTCAAGGAATGTGCTAATATGATTGCAGGATTCCATAGGAATGCAGAAGAGGGTGATTTGAAGGCCGTGTATAATAAGTACTCAAGTTCACAATTTGAGGCTGTCGCAAAGCTACCGTTTGCTGTTTCTCCGCTGCTTGGAAATTAGCCCTTTGCGCAGGCTGCCAGTTTTTTATGCTTTGTACTCTTTAATCCACCATCCTTGTAGATAATGTCAAGTACAATCAAGTTATAAGATTTGTAATGTCAAGGGTAAATTGTTGACATGGATTGTTGCGGTTAAATGCTGGAGTTAATTTTTTATTTTTCTAATCCATAAGGGTAAATACCCAATTAATGTTTTGAAAACTTTGGAGCTGTTTCAACTGTAATTATTGCAAGAATTTGAGAGATCATGTAATGCTTTTTGAGCTGTTTCTACTGTAATTGCAATAGAGTTGGCTGCACACCTATTTTTTTGGTAGCTGATTCATCTGTAATTATTGCAATAATTTTAACTTGAACATCTGTTATTT

Ace file of the UniGene sp_v1.1_unigene8433

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cyclin B2; K05868 cyclin B	-	-	50%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	57%
Blast2go	cyclin b2	-	-	67%

Source	InterPros	Term	Type	Identity
Blast2go	Cyclin, C-terminal	IPR004367	-	67%
Blast2go	Cyclin, N-terminal	IPR006671	-	67%
Blast2go	Cyclin-like	IPR013763	-	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9TN88

Fln msg: your sequence is longer than subject: 561 - 290

Fln protein: MNPSKQTKIGIENRAAKPNRPMASKVVTRAEMRPRRVLSDIGNLGCHASKPNGGDEIKLEKSRKQIQLADKPMPRRFGLDAKNTSATTKSSSMPLGPQRNKDEKGSIRSTLVSKSKHVAGSGKAPGISNVGPSHTRESVSGKLPRVSNVEVSSNDPSSSRIQRRPSTSLSGKNISASGRSSTTGLSGKHTSASGRPSTTVLSSKCTSASGRPPRPSNVDISGKAASNASKSRFCPPEAKGVSRRMPMTDASKRKTRLPRAFTSTLTARSELASGAIERDVMEEEGNLPNIDEADNENQLAVVEYVQDIYHFYWYTEACNNLSSNYMSSQVDINQKMREILIDWLIDVHLKFDLMHETLFLMINLIDRFLSVVYTITRKDVQLVGLTAMLVAAKYEEIWAPKVKELITISNNVYTRGEFLSMEKLMLNKLRFNLAVPTPFVFMKRFLKAAQADKQLELLAFYLLELCLVEYEALKWKPSMLAASAIYMAQHILQRMPAWTRLLQKHAHYKESELKECANMIAGFHRNAEEGDLKAVYNKYSSSQFEAVAKLPFAVSPLLGN*

Protein Length: 562

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTTCTCCATCTGTTTGGTTTCTTCGCCTTCGCTTGAACTGGATTTCACCGTGGTTCTGATCTGGGTTTTCAATTCTCTTTCGTGGGCACTTGGTTTTTTCACA_-_ATGAACCCGTCCAAGCAAACCAAAATTGGAATCGAAAATAGGGCGGCGAAGCCCAACAGGCCCATGGCTAGCAAAGTGGTGACACGGGCCGAAATGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTAGGGTGCCATGCTTCAAAACCCAATGGGGGTGATGAGATCAAGCTAGAGAAATCTAGGAAGCAGATTCAGCTTGCTGATAAGCCAATGCCAAGGAGGTTTGGTCTCGATGCCAAGAATACGAGTGCTACAACAAAGTCATCGTCCATGCCGCTGGGGCCACAGAGGAACAAAGATGAAAAGGGAAGCATTAGATCAACTTTGGTTTCAAAATCCAAGCATGTAGCAGGTTCAGGAAAAGCACCTGGGATTTCCAATGTTGGACCCTCACATACACGTGAATCAGTTTCAGGCAAACTGCCCAGGGTTTCGAATGTTGAAGTCTCAAGTAATGATCCATCGAGTTCAAGGATACAACGCAGGCCTTCTACTAGTCTATCTGGTAAAAACATTTCAGCTTCAGGGAGGTCTTCTACTACTGGCCTCTCAGGTAAACACACTTCAGCTTCAGGGAGGCCTTCCACTACTGTTCTTTCTAGCAAATGTACTTCAGCTTCAGGGAGACCACCAAGGCCTTCAAATGTTGACATCTCAGGCAAAGCCGCTTCAAATGCATCCAAGTCTAGGTTCTGCCCACCTGAAGCTAAAGGTGTCTCAAGAAGAATGCCAATGACTGATGCATCAAAAAGGAAGACAAGGCTTCCACGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGATGTCATGGAAGAGGAAGGGAACTTGCCCAACATTGACGAAGCAGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGTAACAATCTCTCATCAAACTACATGTCAAGCCAAGTTGATATCAACCAGAAGATGCGGGAAATACTTATTGACTGGCTGATTGATGTGCATCTAAAATTTGACTTAATGCATGAGACACTTTTTCTCATGATTAACCTGATTGATAGATTTCTTTCTGTGGTGTACACTATTACGAGAAAGGATGTTCAACTAGTGGGGTTAACTGCCATGCTAGTTGCTGCCAAATATGAAGAGATTTGGGCTCCCAAGGTTAAGGAACTGATTACAATATCAAACAATGTTTACACACGTGGTGAATTTCTCTCCATGGAGAAATTGATGCTCAACAAATTAAGATTCAATTTGGCTGTACCAACTCCCTTTGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAGGCTGATAAACAGCTTGAGTTGCTGGCATTCTATCTTCTTGAACTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAACCATCTATGCTGGCAGCCTCAGCTATATACATGGCACAACACATCCTGCAAAGGATGCCAGCTTGGACAAGACTGCTTCAGAAACATGCACACTATAAAGAATCAGAACTCAAGGAATGTGCTAATATGATTGCAGGATTCCATAGGAATGCAGAAGAGGGTGATTTGAAGGCCGTGTATAATAAGTACTCAAGTTCACAATTTGAGGCTGTCGCAAAGCTACCGTTTGCTGTTTCTCCGCTGCTTGGAAATTAG___CCCTTTGCGCAGGCTGCCAGTTTTTTATGCTTTGTACTCTTTAATCCACCATCCTTGTAGATAATGTCAAGTACAATCAAGTTATAAGATTTGTAATGTCAAGGGTAAATTGTTGACATGGATTGTTGCGGTTAAATGCTGGAGTTAATTTTTTATTTTTCTAATCCATAAGGGTAAATACCCAATTAATGTTTTGAAAACTTTGGAGCTGTTTCAACTGTAATTATTGCAAGAATTTGAGAGATCATGTAATGCTTTTTGAGCTGTTTCTACTGTAATTGCAATAGAGTTGGCTGCACACCTATTTTTTTGGTAGCTGATTCATCTGTAATTATTGCAATAATTTTAACTTGAACATCTGTTATTT

Fln Alignment:

sp_v1.1_unigene8433___VMEEEGNLPNIDEADNENQLAVVEYVQDIYHFYWYTEACNNLSSNYMSSQVDINQKMREILIDWLIDVHLKFDLMHETLFLMINLIDRFLSVVYTITRKDVQLVGLTAMLVAAKYEEIWAPKVKELITISNNVYTRGEFLSMEKLMLNKLRFNLAVPTPFVFMKRFLKAAQADK-------QXXXXXXXXXXXXXXXYEALKWKPSMLAASAIYMAQHILQRMPAWTRLLQKHAHYKESELKECANMIAGFHRNAEEGDLKAVYNKYSSSQFEAVAKLPFAVS
A9TN88______________MQEAEEPVPNIDEHDVGNQLAVVDYIEDIYSFYRKTEVQSCVPADYMSRQSDINEKMRAILIDWLIEVHLKFKLMPETLFLTTNLIDRYL-CVQSVSRKNLQLVGVTAMLLAAKYEEIWAPEVNDFVHISDNAYTREEVLNMEKNMLNTLKFNLTVPTPYVFIVRLLKAAACDKQEKSSPTQLEMVAWFLVELCLTEYPMIKYAPSQLAAAAVYTAQVTLARQPRWGPALQRHSGYSEAHIKECACMMATLHSKANEGNLTVVHKKYSLAKLLAVAKLPHAAS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
756		16		83	0.994512
1649	16		83		0.994512
1767	81		18		0.999994
2023	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain