SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8412

Length: 2025 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8412
CGTCGTGACCTTGGCTGTCACTCAAAATTTTCTACCGCTGAAATGCCAAGCATTATCCAAACATGCAACCCTGCAACCTCATCCTATTGCAAATTGTCGCATGCGTACCGGACAATTATTAAATAAAAACATTCATCTCGATCCATAGTTTGAAAAAATCCAAAGCCTGAGGGCACTTACCGTAGTTGAACGTTCGTCGGCCATAGGACCCACGCTCTCCAATCTATACGATTTCTCCCCGTCCTTCATGTGACCGCACCTTTACTGGTTTGTCACCCTACTTCAGCGCCGCCTTTTCTGCAACGCCGGACAGAGCAAGGTCTTGCCTTCGAATCCCGCTAAATCTCTGATTCTGTCCCTGTCGTTGTCATTGGGGTCAATGAAACGAAGCTTCTCGTCTGTTGTATTATCGATGATTTCACACTTCGAAAGCCTCCGAGTGAATGAAGTAAGCGAAGTTTGTTAATTAATTAAGCCCGCTAGCAATGGACCACGGCCCTTCCGATAGCAGTGGAACAGATGATGATATTCCCCCACCTCATGTGAATCGAGAAGCAAGAGGAGGGGGTCGAGTTGTTCAAAATGGGAGAGTTTCTGTTGGATCACTTTTGTATGAGAGAGCCGAGTTTGACATGGAGTCTCAGATTCACCAGTTGGAACAAGAAGCATACAGTGCTGTGCTGCGGGCTTTCATTGGACAATCTGATACGTTTTCTTGGGATAAAGAGGGACTGATTTCTGATTTGAGGAAAGAACTTAGAGTTTCAGATATGGACCACAGGGAGCTTCTTGGGAAAGTTAATGCAGATGAAGTACTGAGACATATAAGGGAATACCGAAAAGGCAATTTTACTCGACATAATTTTACAAAAAATGCTGCATGTTCTTTCCAGAAACGTGTTCCTACAGTTTCAGCAACTTGTAAAAGGCAAAAAACTACACCTGTGACAACCTCTTTACCTCCACATGTTCTACCACGCACTGTACATACACTGTTGGAAACAGCAGGAAAAAAAATGCCCAGTGGAGCTCGGGAAAAGAAATCCAAAGTGATATCTTCAGGAGATATTCGATGTGAAGATTACAGGACTTTAGAGATTGGTCAAGGAGAAGCCAGGCGAGGTGAAAAAAGGTTAACTGATCCTATTGGTCCAGTTTTACCATCTAATAGAGGGAGAGCACTTCCAAAGGGCCAGAGTTCAAAGGGCTATGGATCTTCTCAAAATGGTACACGCAACAAGGAACCTGTTAGTATTGAGTTACGCGAGACTGACAAGCTTATCAAGGAGGTGGAAAGGGTCTTTAGAGGTGATCATCTTGATCCTACCAATGTAGAGAAAGCTAAGGCGGCACTAAAAGAGCACGAGCAATCTCTTTTTGAGGCAATTGCACGACTTGGTGATGCATCCGATGAAGAAGATGGTCGGATGCTTCATCCTAATTCTTCCCATATATACATCAGCCAAGAAAGATTGTGGGGAAATAGGCAACCAAAAGGAAGTCAAAATCTGGGTTATAGTGAAGAAGGCATAGCTCAAGTTAGTAGAAGGGAAGGTTCAGTCAGGGAACCTATGCTTGGGGCAGACATTATTGCTTTTGATGATCAGCAAGATAATGATGATGATGGTTAGTTTGTAACTTTAAGATATTTGGTTTTGCGAGGTTAGTTATTCAAGATTTCATTTAAGTTTTGGATCAATTCAAAGAAAGTTCAAATCTATCGGCTGGGATGGTTTTGTTGAGCTATTCCTCAAGATTTCAGCCAATAGATTATGCTTTGTCTTCACCATCTGATTGGTGCAAACATTCCTACGTATTTGTTTATCCTGCTCACCCAAAAAGTACAGGTTTTGCAAATTTGTATATTATAATGTCAATGGTTTCCTCAACCTTGAATTTTTGTATCTCGCTTTGTTTCAAACTTTTCTCTCCTTTGGCAAATTGTTGGAATTGCTTGAAATTTTTGTCATTGAATCCCCAGAATTTGAAATACAGAGTAAGTACTGAAGTGCAACTTCTGCCACA

Ace file of the UniGene sp_v1.1_unigene8412

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	emsy N terminus domain-containing protein / ENT domain-containing protein	-	-	3.0e-32	42%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	41%
Blast2go	protein	-	-	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	EMSY N-terminal	IPR005491	-	0.0	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A3BRY9

Fln msg:

Fln protein: MDHGPSDSSGTDDDIPPPHVNREARGGGRVVQNGRVSVGSLLYERAEFDMESQIHQLEQEAYSAVLRAFIGQSDTFSWDKEGLISDLRKELRVSDMDHRELLGKVNADEVLRHIREYRKGNFTRHNFTKNAACSFQKRVPTVSATCKRQKTTPVTTSLPPHVLPRTVHTLLETAGKKMPSGAREKKSKVISSGDIRCEDYRTLEIGQGEARRGEKRLTDPIGPVLPSNRGRALPKGQSSKGYGSSQNGTRNKEPVSIELRETDKLIKEVERVFRGDHLDPTNVEKAKAALKEHEQSLFEAIARLGDASDEEDGRMLHPNSSHIYISQERLWGNRQPKGSQNLGYSEEGIAQVSRREGSVREPMLGADIIAFDDQQDNDDDG*

Protein Length: 383

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATTTTCTACCGCTGAAATGCCAAGCATTATCCAAACATGCAACCCTGCAACCTCATCCTATTGCAAATTGTCGCATGCGTACCGGACAATTATTAAATAAAAACATTCATCTCGATCCATAGTTTGAAAAAATCCAAAGCCTGAGGGCACTTACCGTAGTTGAACGTTCGTCGGCCATAGGACCCACGCTCTCCAATCTATACGATTTCTCCCCGTCCTTCATGTGACCGCACCTTTACTGGTTTGTCACCCTACTTCAGCGCCGCCTTTTCTGCAACGCCGGACAGAGCAAGGTCTTGCCTTCGAATCCCGCTAAATCTCTGATTCTGTCCCTGTCGTTGTCATTGGGGTCAATGAAACGAAGCTTCTCGTCTGTTGTATTATCGATGATTTCACACTTCGAAAGCCTCCGAGTGAATGAAGTAAGCGAAGTTTGTTAATTAATTAAGCCCGCTAGCA_-_ATGGACCACGGCCCTTCCGATAGCAGTGGAACAGATGATGATATTCCCCCACCTCATGTGAATCGAGAAGCAAGAGGAGGGGGTCGAGTTGTTCAAAATGGGAGAGTTTCTGTTGGATCACTTTTGTATGAGAGAGCCGAGTTTGACATGGAGTCTCAGATTCACCAGTTGGAACAAGAAGCATACAGTGCTGTGCTGCGGGCTTTCATTGGACAATCTGATACGTTTTCTTGGGATAAAGAGGGACTGATTTCTGATTTGAGGAAAGAACTTAGAGTTTCAGATATGGACCACAGGGAGCTTCTTGGGAAAGTTAATGCAGATGAAGTACTGAGACATATAAGGGAATACCGAAAAGGCAATTTTACTCGACATAATTTTACAAAAAATGCTGCATGTTCTTTCCAGAAACGTGTTCCTACAGTTTCAGCAACTTGTAAAAGGCAAAAAACTACACCTGTGACAACCTCTTTACCTCCACATGTTCTACCACGCACTGTACATACACTGTTGGAAACAGCAGGAAAAAAAATGCCCAGTGGAGCTCGGGAAAAGAAATCCAAAGTGATATCTTCAGGAGATATTCGATGTGAAGATTACAGGACTTTAGAGATTGGTCAAGGAGAAGCCAGGCGAGGTGAAAAAAGGTTAACTGATCCTATTGGTCCAGTTTTACCATCTAATAGAGGGAGAGCACTTCCAAAGGGCCAGAGTTCAAAGGGCTATGGATCTTCTCAAAATGGTACACGCAACAAGGAACCTGTTAGTATTGAGTTACGCGAGACTGACAAGCTTATCAAGGAGGTGGAAAGGGTCTTTAGAGGTGATCATCTTGATCCTACCAATGTAGAGAAAGCTAAGGCGGCACTAAAAGAGCACGAGCAATCTCTTTTTGAGGCAATTGCACGACTTGGTGATGCATCCGATGAAGAAGATGGTCGGATGCTTCATCCTAATTCTTCCCATATATACATCAGCCAAGAAAGATTGTGGGGAAATAGGCAACCAAAAGGAAGTCAAAATCTGGGTTATAGTGAAGAAGGCATAGCTCAAGTTAGTAGAAGGGAAGGTTCAGTCAGGGAACCTATGCTTGGGGCAGACATTATTGCTTTTGATGATCAGCAAGATAATGATGATGATGGTTAG___TTTGTAACTTTAAGATATTTGGTTTTGCGAGGTTAGTTATTCAAGATTTCATTTAAGTTTTGGATCAATTCAAAGAAAGTTCAAATCTATCGGCTGGGATGGTTTTGTTGAGCTATTCCTCAAGATTTCAGCCAATAGATTATGCTTTGTCTTCACCATCTGATTGGTGCAAACATTCCTACGTATTTGTTTATCCTGCTCACCCAAAAAGTACAGGTTTTGCAAATTTGTATATTATAATGTCAATGGTTTCCTCAACCTTGAATTTTTGTATCTCGCTTTGTTTCAAACTTTTCTCTCCTTTGGCAAATTGTTGGAATTGCTTGAAATTTTTGTCATTGAATCCCCAGAATTTGAAATACAGAGTAAGTACTGAAGTGCAACTTCTGCCACA

Fln Alignment:

sp_v1.1_unigene8412___MDHGPSDSSGTDDDIPPPHVNREAXXXXXXXXXXXXXXXSLLYERA--EFDMESQIHQLEQEAYSAVLRAFIGQSDTFSWDKEGLISDLRKELRVSDMDHRELLGKVNADEVLRHIREY--RKGNFTRHNFTKNAACSFQK---RVPTVSATC-KRQKTTPVTTSLPPHVLPRTVHTL--------LETAGKKM-PSGAREKKS-----------------------KVISSGDIRCE--DYRTLEIGQGEARRGEKRLTDPIGPVLPSNRG-RALPXXXXXXXXXXXXXXTRNKEPVSIELRETDKLIKEVERVFRGDHLDPTNVEKAKAALKEHEQSLFEAIARLGDASDEEDGRMLHPNSSHIYISQERLWGN
A3BRY9______________MDYNPVDSSGTDDDLPPTYQNRGVRGSGRVSGNGRDIVSAVPYNRTKPQTDMETQIHQLEQDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGDDIIQRIRHFYSREWRETKGGLQADMVNNAQRSHDRVPSPTTSARKRQKTSQSIPSASVPVPSPAVHSQTLTAPMQPLSSATKKVAPPGTKGKKTKPDRYALVYDINTADETWEWVDFKEMAPEDIRWEGGDPGIIQQGRGATVHGGKKSSSRNGPMSGPGRGSRGPQKNTSRKEFPPSQNGVGKKSSDCIEILHTESLIKEVERVFSASNPDPLEMEKAKKVLKEHEQSLIDAIARLAEASDGESEERAQP------LQHNRGWRN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
277	20	60	20		0.99255
279		80	20		0.995493
280		80	20		0.995493
281		80	20		0.995493
282			20	80	0.995493
711	90		10		0.90298
712		90	10		0.90298
1127			16	83	0.994512
1146		83		16	0.994512
1213	72	27			1.0
1757	92		7		0.999664
1848		76	23		1.0
1906		16		83	0.994512
1914		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1615	1626	ATG ATG ATG ATG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain