SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8409

Length: 3119 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8409
CCCCAACGCGACTGATGGGGACACTTGGCGGAGCGGCGGTCGTCGATTGGCTCCGGCACGGAAGGCATATCTGAGTTTCAGTTCCCGGGGCCTGAAATCCAAGGACGCAGAGGGTAAAATCGGGCGTCTCCGGGACGATTTTGTGAATCCCGCGGTGTTCGATCGGTGGTGGTTGGTTGGCAGGGTCAGAAGGGAGGGAAAGATGACCCGGGAGAGAAATAAATTTGAGGTGCTGAGGATTGGCGTTTAAGCGGGTCAGAATCTTTAAAGGATTCGAAACTCGAACCTCTGCATTCATTTTTGCATTAACTGCCGAGGTATCTCGTCTCAGCCTGGCTGACATTTTGCAAGGCTTGGATTGATAATCTGAACCGACGGTGCTGTAAATAGATGGGAGTTATTGGAGACTCGCAATGGCGGAGGTGCTGAGATGTAAGCTTTTTGCATGAGGATGGAGTTTCGAAACCGTGATGTCACGCCGCCGAGGTCTCGGGTGAAATAAAACGAACGGCTTGGCTTCGGCTCTTCGTAAACCTCGGTTCGAATCCCGTAGGAGTATGCAAAACAGGAAAATAGACGAAGGTACGGTTGGTGGAAATGTGCAAAGGAGAGCCCGCGACTGAGAAGGGGAACTCCAAAGGTGGGCGAGGGCAGATGGGATTGAAATGCCTGGTGGCAGGGGGTCAGATCAAGGCCGAGAAATTCAGGCATCCATCTGTTCCTCTTCCTCGTTCTCGCACCCAGGTTTGGATTATACGCGCCACGTCGACGATCTTGATCTGGACGTGCGTTATTCAGCTCACTGCACTGGGAGAATTATGGGGGCCTCGCATGCTCAAGGGCCTGCCTTCTTGCTTCACTAATCCCGATGAATCCTCTCAGACATTCTTGACCCAGAAATCGCCCGTCCGCCCGAAGATCGTTCTGCCACCCAAGAGAGTGTACAAAAACAATGGTTATCTTCTGGTGTCTTGCAATGGAGGCCTAAATCAGATGCGAGCAGCGATATGCGACATGGTTGCTATTGCAAGGTATCTTAATGTGACCTTGGTTGTCCCAGAACTGGACAAAACATCATTTTGGGCAGACCCAAGTGAATTCAAAGACATATTTGATGTAGATCACTTTATTACATCGTTGAGAGATGAAGTTCGAATACTCAAAGAACTTCCCCCAAGACTAAAGAACAGAGTACAGCAGGGAATGGTACCTTCCATGCCTCCTGTGAGCTGGTCAAACATATCGTACTACCTTCATCAGATTCTTCCACTGATACAGAAATACAAAGTTCTGCATTTGAACAAGACAGATGCACGGCTGGCTAATAATGGTTTACCCTTAGAGATCCAAAAGCTACGTTGTCGTGTAAATTACCATGCTCTTCGGTTTACTGCAAAAATTGAAGAGTTAGGCCGAAGGTTATTAAAAATGTTGGGTGAAAATGGGCCATTTTTGGTTTTACATCTTCGGTATGAAATGGATATGCTGGCTTTCTCTGGCTGTACTCATGGCTGTACTGATGAGGAGGCTGAGGAACTTACCAGAATGAGGTATGCATATCCATGGTGGAAGGAAAAAGTCATAAACTCTGAATTGAAACGACTGGATGGCTTATGTCCCCTGACACCAGAAGAGACAGCACTGGTTTTGCAGGCGTTTAATTTTGACAGAAGTATGCAAATTTATATTGCAGCTGGGGAAATATATGGTGGCGAAAGGAGGATGTCTGCCCTATCTGCAGCTTATCCCAAAATGGTTAGAAAAGAAATGCTTCTTAATCCTGAGGATTTGAGGCCTTTCCAAAATCACTCATCCCAAATGGCTGCTTTGGATTATATTGTCTCCCGAGAGAGTAATGTGTTTGTCCCAACATATGATGGAAATATGGCAAAAGTTGTTGAAGGGCACCGAAGATTCTTAGGATTTCGGAAAACAATCTTGCTGGACAGGAAACGTCTGGTTGGACTTTTTGACCAATATAAGAATGGGTCCTTAAACTGGGATGAATTTGCCTTTTCTGTTAAGGAAGTACACGCAGAGCGGATGGGAGAACCAACAAAAAGAATAGTTATTCCTGATAGACCAAAGGAAGAGGACTATTTCTATTCAAATCCCGAGGAATGCTTGCAACAGCCTTCTGATCTTCAACGCAGTTCCTTTTAGTTCTTTTCATTATTTTATTATTTACCACATTAGTCTCCTGTTCCTACAAGAGAGACTATTTCAGTTTTAGATGATCTCTGGAAATCCATCTGCTCAGTTATGTTAATGCTTTGGAGGATTCATGGTTTATTCATACCTTAAAAAGCGCTCTTTAGATTATTTTCAGCAAGTCAGAGCTAGAACAACTTTGAGAATGTGAAGATGGGGTGCCTTCATGAGCCTTACGCTCAGATATCATTTGCGCATGTGTTCGACTGAAAGTAAAGGAGTGTTCTTTTGTTTCAGAGTTCATCATAGTTGCGGGTTGGTATAACATCATCTTCCAGAGTAAAACGAGCCTGTAATTATAGCCAGGTCAATCTATTTTTCCTCTATCTGAGTCGTACTTGATGAGATCATCATTGTGTACAGTTCTCAACATGGTGCCAGAGAAGGTATAATCACACAATCAAATGTGTGGATTCTGGAAGACAGCTAGTGACATACGAAATGAATTGTATTTATTGTCAGATCACATCTAGAGGCATTGGCCATCCCGGATCTAGTTGGCATGGTCTTCGGACGAATACAAGAGAAAGGTTCCATCTCTTGATATCTTGTTATTGATCTAGACCTAGTAAGTTCCATTGATTGTTATACTATGCAATAAAAATCACATAAGCAATCTGTTGCTTTTACAGAAACAACATATTGACGCAAGTGCTTGAGAATTTGACATTTCCACTGCTACTACCCCATGTATATGAGCGGAAAATTGTCTTTAGTAAAACAATGATTTTTTCAGCTGAATTAAGCTCTAAAAAATCCTTAAATTCAAGTCCAAGGCACTGGCATAGTTGGTCTTAAGTATATATGCATGCACATAGTCTCTGTGGTAATCAATTATGCATGTATAGCTGAGCTTTGAAATTGTTTCTTACTATACCTCTGAAGCCGGGGTGTATTTATAACACCTT

Ace file of the UniGene sp_v1.1_unigene8409

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	O-FucT domain containing protein	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	73%
Blast2go	auxin-independent growth promoter	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GDP-fucose protein O-fucosyltransferase	IPR019378	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SIP6

Fln msg:

Fln protein: MCKGEPATEKGNSKGGRGQMGLKCLVAGGQIKAEKFRHPSVPLPRSRTQVWIIRATSTILIWTCVIQLTALGELWGPRMLKGLPSCFTNPDESSQTFLTQKSPVRPKIVLPPKRVYKNNGYLLVSCNGGLNQMRAAICDMVAIARYLNVTLVVPELDKTSFWADPSEFKDIFDVDHFITSLRDEVRILKELPPRLKNRVQQGMVPSMPPVSWSNISYYLHQILPLIQKYKVLHLNKTDARLANNGLPLEIQKLRCRVNYHALRFTAKIEELGRRLLKMLGENGPFLVLHLRYEMDMLAFSGCTHGCTDEEAEELTRMRYAYPWWKEKVINSELKRLDGLCPLTPEETALVLQAFNFDRSMQIYIAAGEIYGGERRMSALSAAYPKMVRKEMLLNPEDLRPFQNHSSQMAALDYIVSRESNVFVPTYDGNMAKVVEGHRRFLGFRKTILLDRKRLVGLFDQYKNGSLNWDEFAFSVKEVHAERMGEPTKRIVIPDRPKEEDYFYSNPEECLQQPSDLQRSSF*

Protein Length: 523

Fln nts: CCCCAACGCGACTGATGGGGACACTTGGCGGAGCGGCGGTCGTCGATTGGCTCCGGCACGGAAGGCATATCTGAGTTTCAGTTCCCGGGGCCTGAAATCCAAGGACGCAGAGGGTAAAATCGGGCGTCTCCGGGACGATTTTGTGAATCCCGCGGTGTTCGATCGGTGGTGGTTGGTTGGCAGGGTCAGAAGGGAGGGAAAGATGACCCGGGAGAGAAATAAATTTGAGGTGCTGAGGATTGGCGTTTAAGCGGGTCAGAATCTTTAAAGGATTCGAAACTCGAACCTCTGCATTCATTTTTGCATTAACTGCCGAGGTATCTCGTCTCAGCCTGGCTGACATTTTGCAAGGCTTGGATTGATAATCTGAACCGACGGTGCTGTAAATAGATGGGAGTTATTGGAGACTCGCAATGGCGGAGGTGCTGAGATGTAAGCTTTTTGCATGAGGATGGAGTTTCGAAACCGTGATGTCACGCCGCCGAGGTCTCGGGTGAAATAAAACGAACGGCTTGGCTTCGGCTCTTCGTAAACCTCGGTTCGAATCCCGTAGGAGTATGCAAAACAGGAAAATAGACGAAGGTACGGTTGGTGGAA_-_ATGTGCAAAGGAGAGCCCGCGACTGAGAAGGGGAACTCCAAAGGTGGGCGAGGGCAGATGGGATTGAAATGCCTGGTGGCAGGGGGTCAGATCAAGGCCGAGAAATTCAGGCATCCATCTGTTCCTCTTCCTCGTTCTCGCACCCAGGTTTGGATTATACGCGCCACGTCGACGATCTTGATCTGGACGTGCGTTATTCAGCTCACTGCACTGGGAGAATTATGGGGGCCTCGCATGCTCAAGGGCCTGCCTTCTTGCTTCACTAATCCCGATGAATCCTCTCAGACATTCTTGACCCAGAAATCGCCCGTCCGCCCGAAGATCGTTCTGCCACCCAAGAGAGTGTACAAAAACAATGGTTATCTTCTGGTGTCTTGCAATGGAGGCCTAAATCAGATGCGAGCAGCGATATGCGACATGGTTGCTATTGCAAGGTATCTTAATGTGACCTTGGTTGTCCCAGAACTGGACAAAACATCATTTTGGGCAGACCCAAGTGAATTCAAAGACATATTTGATGTAGATCACTTTATTACATCGTTGAGAGATGAAGTTCGAATACTCAAAGAACTTCCCCCAAGACTAAAGAACAGAGTACAGCAGGGAATGGTACCTTCCATGCCTCCTGTGAGCTGGTCAAACATATCGTACTACCTTCATCAGATTCTTCCACTGATACAGAAATACAAAGTTCTGCATTTGAACAAGACAGATGCACGGCTGGCTAATAATGGTTTACCCTTAGAGATCCAAAAGCTACGTTGTCGTGTAAATTACCATGCTCTTCGGTTTACTGCAAAAATTGAAGAGTTAGGCCGAAGGTTATTAAAAATGTTGGGTGAAAATGGGCCATTTTTGGTTTTACATCTTCGGTATGAAATGGATATGCTGGCTTTCTCTGGCTGTACTCATGGCTGTACTGATGAGGAGGCTGAGGAACTTACCAGAATGAGGTATGCATATCCATGGTGGAAGGAAAAAGTCATAAACTCTGAATTGAAACGACTGGATGGCTTATGTCCCCTGACACCAGAAGAGACAGCACTGGTTTTGCAGGCGTTTAATTTTGACAGAAGTATGCAAATTTATATTGCAGCTGGGGAAATATATGGTGGCGAAAGGAGGATGTCTGCCCTATCTGCAGCTTATCCCAAAATGGTTAGAAAAGAAATGCTTCTTAATCCTGAGGATTTGAGGCCTTTCCAAAATCACTCATCCCAAATGGCTGCTTTGGATTATATTGTCTCCCGAGAGAGTAATGTGTTTGTCCCAACATATGATGGAAATATGGCAAAAGTTGTTGAAGGGCACCGAAGATTCTTAGGATTTCGGAAAACAATCTTGCTGGACAGGAAACGTCTGGTTGGACTTTTTGACCAATATAAGAATGGGTCCTTAAACTGGGATGAATTTGCCTTTTCTGTTAAGGAAGTACACGCAGAGCGGATGGGAGAACCAACAAAAAGAATAGTTATTCCTGATAGACCAAAGGAAGAGGACTATTTCTATTCAAATCCCGAGGAATGCTTGCAACAGCCTTCTGATCTTCAACGCAGTTCCTTTTAG___TTCTTTTCATTATTTTATTATTTACCACATTAGTCTCCTGTTCCTACAAGAGAGACTATTTCAGTTTTAGATGATCTCTGGAAATCCATCTGCTCAGTTATGTTAATGCTTTGGAGGATTCATGGTTTATTCATACCTTAAAAAGCGCTCTTTAGATTATTTTCAGCAAGTCAGAGCTAGAACAACTTTGAGAATGTGAAGATGGGGTGCCTTCATGAGCCTTACGCTCAGATATCATTTGCGCATGTGTTCGACTGAAAGTAAAGGAGTGTTCTTTTGTTTCAGAGTTCATCATAGTTGCGGGTTGGTATAACATCATCTTCCAGAGTAAAACGAGCCTGTAATTATAGCCAGGTCAATCTATTTTTCCTCTATCTGAGTCGTACTTGATGAGATCATCATTGTGTACAGTTCTCAACATGGTGCCAGAGAAGGTATAATCACACAATCAAATGTGTGGATTCTGGAAGACAGCTAGTGACATACGAAATGAATTGTATTTATTGTCAGATCACATCTAGAGGCATTGGCCATCCCGGATCTAGTTGGCATGGTCTTCGGACGAATACAAGAGAAAGGTTCCATCTCTTGATATCTTGTTATTGATCTAGACCTAGTAAGTTCCATTGATTGTTATACTATGCAATAAAAATCACATAAGCAATCTGTTGCTTTTACAGAAACAACATATTGACGCAAGTGCTTGAGAATTTGACATTTCCACTGCTACTACCCCATGTATATGAGCGGAAAATTGTCTTTAGTAAAACAATGATTTTTTCAGCTGAATTAAGCTCTAAAAAATCCTTAAATTCAAGTCCAAGGCACTGGCATAGTTGGTCTTAAGTATATATGCATGCACATAGTCTCTGTGGTAATCAATTATGCATGTATAGCTGAGCTTTGAAATTGTTTCTTACTATACCTCTGAAGCCGGGGTGTATTTATAACACCTT

Fln Alignment:

sp_v1.1_unigene8409___MCKGEPATEKGNSKGGRGQMGLKCLVAGGQIKAEKFRHPSVPLPRSRTQVWIIRATSTILIWTCVIQLTALGELWGPRMLKGLPSCFTNPDESSQTFLTQKSP-VRPKIVLPPKRVYKNNGYLLVSCNGGLNQMRAAICDMVAIARYLNVTLVVPELDKTSFWADPSEFKDIFDVDHFITSLRDEVRILKELPPRLKNRVQQGMVPSMPPVSWSNISYYLHQILPLIQKYKVLHLNKTDARLANNGLPLEIQKLRCRVNYHALRFTAKIEELGRRLLKMLGENGPFLVLHLRYEMDMLAFSGCTHGCTDEEAEELTRMRYAYPWWKEKVINSELKRLDGLCPLTPEETALVLQAFNFDRSMQIYIAAGEIYGGERRMSALSAAYPKMVRKEMLLNPEDLRPFQNHSSQMAALDYIVSRESNVFVPTYDGNMAKVVEGHRRFLGFRKTILLDRKRLVGLFDQYKNGSLNWDEFAFSVKEVHAERMGEPTKRIVIPDRPKEEDYFYSNPEECLQ
D7SIP6______________MCRLERSEKKGVVIG----MGLKALSAS---RVEKLKS-SMVTSRSRMKLWMIRATTSVLLWTCIVQLTALGDMWGPRVLKGWPSCFTQDSSAAASALDDKLGWSAPPRVLPPKRVYKNNGYLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWADPSEFEDIFDVDHFITSLRDEVRVLKELPPRLKKRVEQGVFYSMPPISWSDISYYRNQILPLIQKYKVVHLNRTDARLANNGQPLEIQKLRCRVNFSALRFTSQIEELGRRVIRLLRQNGPFLVLHLRYEMDMLAFSGCTQGCNEDEVEELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEETALTLRALDIDRNIQIYIAAGEIYGGERRMATLAAAYPKLVRKETLLESSDLRFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRFLGFKKTILLDRRLLVDLIDQYTKGSLSWDEFSSAVKESHGDRMGNPIKRLVIPDRPKEEDYFYANPQECLQ

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
403			25	75	0.996473
587		80	20		0.995493
1021		11		88	0.923564
1022			88	11	0.923564
1026		11		88	0.923564
1285	66			33	0.997452
1290	66		33		0.997452
1291	66	33			0.997452
1832		20		80	0.995493
1847	16	83			0.994512
1849		83	16		0.994512
1850		83	16		0.994512
1879	87		12		0.992554
1880			12	87	0.992554
2016			90	10	0.90298
2409		28		71	1.0
2410	57		14		1.0
2411			14	85	0.993533
2412	28	71			1.0
2455	11		88		0.923564
2457			11	88	0.923564
2458			11	88	0.923564
2459		88	11		0.923564
2501	83		5	11	0.999887
2511			88	11	0.999937
2512	89		10		0.999919
2733			6	93	0.999364
2740		6	93		0.999364
2741	93			6	0.999364
2742	93			6	0.999364
2743			6	93	0.999364
2744	93		6		0.999364
2746	93			6	0.999364
2747	93		6		0.999364
2748			93	6	0.999364
2750		6	93		0.999532
2751	92			7	0.999602
2752	92	7			0.999602
2840	90			9	0.999872
2861	58			41	1.0
2862	58	41			1.0
2905	83		16		0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain