SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8407

Length: 1864 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8407

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF642 domain containing protein	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	uncharacterized protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF642	IPR006946	-	0.0	68%
Blast2go	Galactose-binding domain-like	IPR008979	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSP7

Fln msg:

Fln protein: MTMEIFFKLSFWRAAFRVGILLLCFGLESLATAGDGLLTNGHFEDSPDPNFLNATVIVGETVLPGWKTEGNVEYITSGQVQGPKVPVVPQGRHAVRLGNDGQISQGIELDRGSVYAITFGGARTCSQLETVNLSVPPISGIIDLQTEYSGKGWDAYAWGFRADSRQARLVFLNPGMEDDPACGPVIDSVAIKKVSAPNAPNDQNLVKNGDFESGPWILRYSSLGVLIPPTPYEDWSPVPHWMVEAGKAVRYVDSDHFWVPQGNRAIQLLSGMDGSIVQSIYTVSGNTYSLSFLLGEAGDSCREPMAVMASAANRSQDFKYSTSSRYQNFNMSFLADSEITRIGFYSMYYNTKIGDNSSLCGPVIDAVRVTDLGQVNSGGSISGLSFRLLCYCANLLALVFIMFFL*

Protein Length: 407

Fln nts: GATCAGGGTTAACATGGATCTATACTAATTTGATACCTTTTAGTGAATAGTAATAAGTTAACACCTGGTATCAAATCTACTTCCTGGCCTACTGGCATGTACACTCACTGTGATTTTATCAGGCCCTTGATAATCTTTTCTTAAATTCCAGAGTAATTAGCAAAATGACAATGGAGATTGTTGGTTGTACTATGGTTCAGCAGCTAGTCAGTAGAAACCCTTGATAACCTTTTCTTAAATTGCAGATTTATCAGTAAGATGACAATGGGGATTGTTGGTTGGACTATGGGTCAGCAGCAAGTCATTGGAAGTTTATTTCAACTAGCCTAGATTCCAACTTCTTGGTACTTATACCTCTCTCATCTACTCGGAAATCCCCAGGGTTTTCATCCCACTCCAACTAACAAGTTGGGTGATTTCTGTAACCAAATACAG_-_ATGACAATGGAGATTTTTTTTAAGCTTTCCTTCTGGCGGGCAGCTTTTCGGGTTGGAATACTTCTTCTCTGCTTTGGGCTGGAGAGCTTGGCAACTGCAGGGGATGGACTGCTAACCAACGGACACTTTGAGGACTCCCCGGACCCCAATTTTCTCAATGCAACGGTGATTGTAGGGGAGACGGTGTTACCAGGCTGGAAAACCGAAGGAAACGTTGAGTACATAACCTCAGGCCAAGTACAAGGCCCCAAGGTGCCAGTGGTTCCGCAGGGTAGACATGCTGTAAGGTTGGGGAACGATGGGCAGATAAGTCAGGGCATCGAACTGGACAGAGGGTCTGTTTATGCTATCACCTTCGGTGGCGCTCGGACTTGCTCTCAGCTGGAGACAGTGAATTTATCCGTCCCGCCCATCAGTGGAATCATAGATTTGCAGACAGAGTACAGCGGCAAAGGGTGGGATGCGTATGCATGGGGATTTCGTGCAGATTCAAGGCAAGCCAGGCTTGTTTTCCTTAATCCGGGGATGGAAGATGATCCTGCTTGCGGTCCCGTGATCGATTCTGTGGCGATAAAGAAGGTTTCAGCGCCGAATGCTCCAAATGACCAAAACTTGGTGAAGAATGGAGATTTCGAATCGGGGCCATGGATTCTTCGTTACAGTTCGTTGGGAGTCCTGATACCTCCCACCCCTTACGAGGACTGGTCGCCTGTTCCCCACTGGATGGTGGAAGCGGGCAAGGCCGTGAGATACGTAGACTCCGACCATTTCTGGGTCCCACAAGGCAACCGAGCCATTCAACTCTTGTCCGGCATGGATGGTTCCATCGTCCAGTCAATATACACAGTCTCAGGCAACACTTACAGTCTTTCTTTCCTCCTGGGAGAGGCAGGAGACTCCTGCCGGGAGCCCATGGCGGTCATGGCCTCCGCCGCGAATCGATCCCAGGACTTCAAATACAGTACCAGCAGCAGGTATCAGAACTTCAATATGAGCTTTCTGGCCGATTCTGAGATCACCAGAATTGGCTTCTATAGTATGTATTACAATACCAAAATTGGGGATAACAGCTCTCTGTGCGGACCTGTTATTGATGCAGTTAGGGTCACTGATCTCGGACAGGTGAATTCCGGGGGATCGATCTCTGGATTATCTTTCAGGTTACTCTGCTATTGTGCTAATCTATTGGCGTTGGTATTCATAATGTTTTTCCTGTAA___GCTAATTTGATATGATATATATAAGGTTCTCTGCTTAAGTCCTGTAAAATTTATTGATTGTTGAGAAGGGGCAGCAGCTTATAAGCAAATGCCTTTGGCGGCCTCTGTCATATTATCTACTCAGCTCTCACTATCTCATATATATATTCATTCTGTTTGGCAAATAGTGTCATGTTGCTTGCTTGTCTGTGAGCAGTTCTAGGCCATCTAT

Fln Alignment:

sp_v1.1_unigene8407___AAFRVGILLLCFGLESL-------ATAGDGLLTNGHFEDSPDPNFLNATVIVGET-VLPGWKTEGNVEYITSXXXXXXXXXXXXXXRHAVRLGNDGQISQGIELDRGSVYAITFGGARTCSQLETVNLSVPPISGIIDLQTEYSGKGWDAYAWGFRADSRQARLVFLNPGMEDDPACGPVIDSVAIKKVSAPNAPNDQNLVKNGDFESGPWILRYSSLGVLIPPTPYEDWSPVPHWMVEAGKAVRYVDSDHFWVPQGNRAIQLLSGMDGSIVQSIYTVSGNTYSLSFLLGEAGDSCREPMAVMASAANRSQDFKYS---TSSRYQNFNMSFLADSEITRIGFYSMYYNTKIGDNSSLCGPVIDAVRVTDLGQVNSGGSISGLSFRLLCYCANLLALVFIMFF
C0PSP7______________SVFRLLQVLICLSILSTFVTAQDGVTAEDGLLVNGNFEKE---GIENRTSRAGDIDSLPGWNIDGMVEYINEGQKQGSIYLVVPEGKHAVRLGNEAQISQQINIQKGSTYSLTFSAARTCAQLESLNVSVPPSTRNVDLQTLYSIYGWDTYAWAFQAQSENVEVIFQNPGMEEDPTCGPILDAIALKQISTPDKLRD-NAVINGDFEEGPWMFANETLGVLLPTNLDVATSSLPGWIMESSKAVRYIDSNHYKVPEGKRAIELLSGKEGIISQMVETDPGNKYTMSFLLGQAGDGCQEPMAVMAFAGDQADSFHFNNPPANGIYEPNNVTFTAKAARTRIAFYSLYYNTRVRDRSSLCGPVIDLVKVVDLSKSGTVAGFSGFSVSLL-----LLVSVLTMAF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1355		18		81	0.999994
1369			9	27	1.0
1453		25		75	1.0
1471		75	25		1.0
1477		25		75	1.0
1575		35	64		1.0
1760		50	50		1.0
1807	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain