SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8389

Length: 2957 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene8389
GTGCAGGATCTCAGTAGTCTGGAAGTTTCACCAATGGATGGGCAGACTCTAACTGAGGCACTGCATGCTCATGGTATCAATATGCGCTACATTGGTAAAGTGGCAAATATGGCAAAGCATTTGCCCCACATTTTGGATCTTTGTATTATTGAAATGGTTGTCAGGGCTGCAAAACATGTTTTGAAGGGTGTTCTAAGGGAAACCCAAGATCATGATCTGGGAGGTGCTATAGCACACTTCTTCAATTGTTTTCTTGGTCATGATGTACCTGTTGGCTCGAAAATTGGAGGTGCATCAACTGGAGACAAGTCTAGGAAGAAAGGAAAAGGTGGGCAATCAAAAAAGGCATCGAACCAGTTTTCTTCTGGAGCAGATAATGCTTCAAAACCACCAGGAGGTGTTTCTGCTAAAGATAATAGGAATCCTTTGCAAGTTAAAAATGTTGGACAAACTCAAGCATCATATTTGTGTATAACCTCGGAACTTGTCTGGATTGATATCCAGGAGTGTGTCAAATTCAAGTATCAGTTTGAACTACCTGAAGACGTGAAAACAATAGTGAAGAAGATGTCAACCTTCCGCAATCTTTGCCAAAAGGTTGGTTTAACTATTGCTGCACGGAAATATGATCTTAATGCGGAGGCTCCATTCAAAACATCGGACATATTGGACATGCATGCAGTGGCAAAGCACTCTGCTCCTGTTTGTGCCGATGCTCGTGATCTTATAGAAACTGGGAAACTTCAGTTAGCAGAGGGGAGGCTTAATGAGGCATATGAGTTGTTCTCTGAAGCATTTGCAATTCTCCAACAGGTTTCTGGTCCTATGCATCGAGAGGTGGCAAATTGTTGCCGATATCTTGCAATGGTTTTATATCATGCTGGAGACATGGCAGGAGCAATAATGCAGCAGCACAAAGAGCTTATCATAAATGAGCGATGCCTTGGTCTGGATCATCCTGATACAGCACACAGCTATGGTAACATGGCACTTTTCTACCATGGATTGAACCAAACGGAGCTTGCATTGCGGCATATGGCTCGCACATTGCTTTTACTAAATGTTTCATGTGGGCCTGATCATCCAGATGTTGCTGCAACATTCATTAATATTGCTATGATGTACCAGGATATAGGAAGGATGAATGTAGCACTGCGTTATCTCCAAGAAGCCTTGAAAAAGAATGAACGACTTCTTGGACATGACCATATTCAGACAGCTGTTTGTTATCATGCCCTTGCAATTGCCTTCAATTGCATGGGTGCTTATAAGCTATCCCTTCAGCATGAACGGAGCACATACAATATTTTGGCAAAACAGCTTGGTGAAGATGATTCAAGGACTCGGGACTCAGCAAACTGGATCAAGACTTTTCAGTTCCGTGATGCACAGGCACAGAAGCAAAAAGGACAGGCAGTGGATGCAGTTACTGCTCAAAAAGCCGTGGATGCTCTGAAGGCTCGTCCTGATTTGATTCAGGCTTTTCAGATGGCAACTGGAGGAGCTGCCGCAGTTCGTCCACGTGCCTCCCTTAACAAATCTGCAGCTGCAGCTGCCCTGATCGGTGATGTGCTTCCTAGAGGTAGGGGAATGGATGAACGTGGAGCACGAGCAGCAGCTGAGGTTCGTAAGAAAGCTGCTGCCAGAGGCCTTAATGTTCGTCCACAAAGTGTCCCTGTACAGGCCTTGCCAGTACAGTTGACTGAACTGTTAAATTTAATCAATGCTGGTGTGCCAAGCAAAGCCTCACCAAGTGATTCTCCTTCAACATCTGCTCAGGATGCAGGCATTGGGAACAGTACAAATGCTGCGAATGAAGTAGAAGATACAATCGTTTGTGGGGAAGGAACTAGTGGAAATGCATCGTTGGAGAATACAGAAGAAAAAACTCCACTGGGATTGGGTGCAGGTCTAACTTTAGATAATAAGAAGCAAAAGGCAAAGCCAAATGTTACAGCAGAATGCTAAGGTGCTTGGGAATGCAAATAGTATTGAAATTCAGTTCGAAGTTAAATAATAATTTTATGATCAGTTGTTACTATTCTGGGGTCAGGAAAATTAATAGAAGGATGTGGTGTTTCGTTCGTCAAGGAGTGCCCCTCAGTTTTGCAGCGCAGTAGCAAGGGTTGCCAATCCTAATAGTGAGATTTTAATTCTTTTCTCAGACGGGGAGAGGTGGTTATTTTGGTTGTTTTTTCATTCATGTAGAGAAGACAACTTAGTGTCCACCAGTCTTGGTGTTATTGCAGGCAATAAGTCAGATTGTAATTCAGAAAATAGGAGCGAAGTAATGCTAAAGGATGTTGGCTGAAGCTAGAATTTTGCAATTTAAAAAGTATTAAGCTGAATTCTGTCCCATTTGGATCCTCCCTTCTGTATCTTTTATTTCATTTGATCAAAAGGTAATCTAATATTTAATCTCAGGGATTGCATTAAGATGTCAATGCAGACGATGTTTACCAGGACCTTTAACTAAATGTATTTATTGATTTGTAATTTCAAAAGTTTGGATAGGACCCACATTTTCAGAGGTGAGGTTATAAGCCCTGGCAAAGCAAGGATAGTTGCTGGGTTACCAACAATTTGTACTATTTAGATTGTAGCATGACATGCTCTGAGTATGCAGTCAGATTTGCCTCATGGCCATCTTCACATTCTTTTTAACGAAAGAGGAAAAGCCAGGCATAATGGCATTTCAAAGGAATGCTCAAGTATTAATTTATGGGAGTAATTACAGCAATAGGTGTTCATGTCGATTTCTAGACAATTTAATAGCCATTTCATATTACACTTTGTTTATGAAAGTTTGCAGCTGGAAATACCAAATTATGTAGATAGATATCTAGAATATTAGTAGTTAGCCATTTTTGTACTGACTACAGTACAGAGGAGAATGACTATGTAAGTATTGATTTGTATTTAGATGATGCAATAAACAAAGAAGATAACTCAAAGAC

Ace file of the UniGene sp_v1.1_unigene8389 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9RHH9_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	eukaryotic translation initiation factor 3	-	-	70%

Source	InterPros	Term	Type	Identity
Blast2go	Tetratricopeptide-like helical	IPR011990	-	70%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	70%
Blast2go	Tetratricopeptide repeat	IPR019734	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABY1

Fln msg: Overlapping hits, possible frame ERROR between 2069 and 2066, and overlapping frame ERROR between 2161 and 2158,

Fln protein: MLRCLGMQIVLKFSSKLNNNFMISCYYSGVRKINxxxVVFRSSRSAPQFCSAVARVANPNSEILxxxxRRGEVVILVVFSFM*

Protein Length: 84

Fln nts: GTGCAGGATCTCAGTAGTCTGGAAGTTTCACCAATGGATGGGCAGACTCTAACTGAGGCACTGCATGCTCATGGTATCAATATGCGCTACATTGGTAAAGTGGCAAATATGGCAAAGCATTTGCCCCACATTTTGGATCTTTGTATTATTGAAATGGTTGTCAGGGCTGCAAAACATGTTTTGAAGGGTGTTCTAAGGGAAACCCAAGATCATGATCTGGGAGGTGCTATAGCACACTTCTTCAATTGTTTTCTTGGTCATGATGTACCTGTTGGCTCGAAAATTGGAGGTGCATCAACTGGAGACAAGTCTAGGAAGAAAGGAAAAGGTGGGCAATCAAAAAAGGCATCGAACCAGTTTTCTTCTGGAGCAGATAATGCTTCAAAACCACCAGGAGGTGTTTCTGCTAAAGATAATAGGAATCCTTTGCAAGTTAAAAATGTTGGACAAACTCAAGCATCATATTTGTGTATAACCTCGGAACTTGTCTGGATTGATATCCAGGAGTGTGTCAAATTCAAGTATCAGTTTGAACTACCTGAAGACGTGAAAACAATAGTGAAGAAGATGTCAACCTTCCGCAATCTTTGCCAAAAGGTTGGTTTAACTATTGCTGCACGGAAATATGATCTTAATGCGGAGGCTCCATTCAAAACATCGGACATATTGGACATGCATGCAGTGGCAAAGCACTCTGCTCCTGTTTGTGCCGATGCTCGTGATCTTATAGAAACTGGGAAACTTCAGTTAGCAGAGGGGAGGCTTAATGAGGCATATGAGTTGTTCTCTGAAGCATTTGCAATTCTCCAACAGGTTTCTGGTCCTATGCATCGAGAGGTGGCAAATTGTTGCCGATATCTTGCAATGGTTTTATATCATGCTGGAGACATGGCAGGAGCAATAATGCAGCAGCACAAAGAGCTTATCATAAATGAGCGATGCCTTGGTCTGGATCATCCTGATACAGCACACAGCTATGGTAACATGGCACTTTTCTACCATGGATTGAACCAAACGGAGCTTGCATTGCGGCATATGGCTCGCACATTGCTTTTACTAAATGTTTCATGTGGGCCTGATCATCCAGATGTTGCTGCAACATTCATTAATATTGCTATGATGTACCAGGATATAGGAAGGATGAATGTAGCACTGCGTTATCTCCAAGAAGCCTTGAAAAAGAATGAACGACTTCTTGGACATGACCATATTCAGACAGCTGTTTGTTATCATGCCCTTGCAATTGCCTTCAATTGCATGGGTGCTTATAAGCTATCCCTTCAGCATGAACGGAGCACATACAATATTTTGGCAAAACAGCTTGGTGAAGATGATTCAAGGACTCGGGACTCAGCAAACTGGATCAAGACTTTTCAGTTCCGTGATGCACAGGCACAGAAGCAAAAAGGACAGGCAGTGGATGCAGTTACTGCTCAAAAAGCCGTGGATGCTCTGAAGGCTCGTCCTGATTTGATTCAGGCTTTTCAGATGGCAACTGGAGGAGCTGCCGCAGTTCGTCCACGTGCCTCCCTTAACAAATCTGCAGCTGCAGCTGCCCTGATCGGTGATGTGCTTCCTAGAGGTAGGGGAATGGATGAACGTGGAGCACGAGCAGCAGCTGAGGTTCGTAAGAAAGCTGCTGCCAGAGGCCTTAATGTTCGTCCACAAAGTGTCCCTGTACAGGCCTTGCCAGTACAGTTGACTGAACTGTTAAATTTAATCAATGCTGGTGTGCCAAGCAAAGCCTCACCAAGTGATTCTCCTTCAACATCTGCTCAGGATGCAGGCATTGGGAACAGTACAAATGCTGCGAATGAAGTAGAAGATACAATCGTTTGTGGGGAAGGAACTAGTGGAAATGCATCGTTGGAGAATACAGAAGAAAAAACTCCACTGGGATTGGGTGCAGGTCTAACTTTAGATAATAAGAAGCAAAAGGCAAAGCCAAATGTTACAGCAGA_-_ATGCTAAGGTGCTTGGGAATGCAAATAGTATTGAAATTCAGTTCGAAGTTAAATAATAATTTTATGATCAGTTGTTACTATTCTGGGGTCAGGAAAATTAATxxxxxxxxxGTGGTGTTTCGTTCGTCAAGGAGTGCCCCTCAGTTTTGCAGCGCAGTAGCAAGGGTTGCCAATCCTAATAGTGAGATTTTAATxxxxxxxxxCAGACGGGGAGAGGTGGTTATTTTGGTTGTTTTTTCATTCATGTAG___AGAAGACAACTTAGTGTCCACCAGTCTTGGTGTTATTGCAGGCAATAAGTCAGATTGTAATTCAGAAAATAGGAGCGAAGTAATGCTAAAGGATGTTGGCTGAAGCTAGAATTTTGCAATTTAAAAAGTATTAAGCTGAATTCTGTCCCATTTGGATCCTCCCTTCTGTATCTTTTATTTCATTTGATCAAAAGGTAATCTAATATTTAATCTCAGGGATTGCATTAAGATGTCAATGCAGACGATGTTTACCAGGACCTTTAACTAAATGTATTTATTGATTTGTAATTTCAAAAGTTTGGATAGGACCCACATTTTCAGAGGTGAGGTTATAAGCCCTGGCAAAGCAAGGATAGTTGCTGGGTTACCAACAATTTGTACTATTTAGATTGTAGCATGACATGCTCTGAGTATGCAGTCAGATTTGCCTCATGGCCATCTTCACATTCTTTTTAACGAAAGAGGAAAAGCCAGGCATAATGGCATTTCAAAGGAATGCTCAAGTATTAATTTATGGGAGTAATTACAGCAATAGGTGTTCATGTCGATTTCTAGACAATTTAATAGCCATTTCATATTACACTTTGTTTATGAAAGTTTGCAGCTGGAAATACCAAATTATGTAGATAGATATCTAGAATATTAGTAGTTAGCCATTTTTGTACTGACTACAGTACAGAGGAGAATGACTATGTAAGTATTGATTTGTATTTAGATGATGCAATAAACAAAGAAGATAACTCAAAGAC

Fln Alignment:

sp_v1.1_unigene8389___MISCYYSGVRKINRxDVVFRSSRSAPQFCSAVARVANPNSEILILxLRRGEVVILVVFSFM
D5ABY1______________MISCYYSGVGKINRxDLVFRSSSNDPQFCGAAVWVGKPNGEILILxLRRAEGVTEVVFSFI

SNPs (tot: 72)

Position	A %	C %	G %	T %	Probability
398		11		88	0.923564
422		90	10		0.90298
485	70			23	1.0
511		12		87	0.999964
605			81	18	0.999994
612	90	10			0.90298
613			20	80	0.999996
614		11		88	0.923564
618		88	11		0.923564
620		11		88	0.923564
622	88	11			0.923564
623			12	87	0.992554
624	87		12		0.992554
626			14	85	0.993533
635	16			83	0.994512
637		83		16	0.994512
638	83		16		0.994512
640	83	16			0.994512
642	16		16	66	0.988813
643		16		83	0.994512
644		83		16	0.994512
645	16		16	66	0.988813
648		66		16	0.988813
649			33	66	1.0
650	16			83	0.994512
654	16	83			0.994512
656	83		16		0.994512
658		80	20		0.995493
659	80		20		0.995493
662	20	80			0.995493
663		20		80	0.995493
664			20	80	0.995493
665	20			80	0.995493
666	80	20			0.995493
708			25	75	0.996473
711	25	75			0.996473
713	25			75	0.996473
718			25	75	0.996473
719	75		25		0.996473
720	75			25	0.996473
724		75	25		0.996473
726	75	25			0.996473
2035		14		85	0.993533
2069	11			88	0.923564
2090	11			88	0.923564
2092	88	11			0.923564
2134		12	87		0.992554
2181	85	14			0.993533
2417	42		57		1.0
2453		80	20		0.995493
2454	80			20	0.995493
2455		80	20		0.995493
2458	20			80	0.995493
2462	20			80	0.995493
2463	20		80		0.995493
2465	80		20		0.995493
2467	80	20			0.995493
2468	20			80	0.995493
2470	80		20		0.995493
2472		20		80	0.995493
2473		80	20		0.995493
2500	50		50		1.0
2511	25	75			0.996473
2512		25		75	0.996473
2513	25			75	0.996473
2515	75	25			0.996473
2516		25	75		0.996473
2517	20			80	0.995493
2518	20			80	0.995493
2519			20	80	0.995493
2526	80		20		0.995493
2529	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain