SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8368

Length: 2332 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8368
CGTCGTGACCTTGGCTGTCACCAATTTTGAGTATGAATGCATGGCCTCTGTAAGGTTCGATCCATTTTGTTGAAGGTCTAAAGTAAGTTGGAGTAAGGATTTATTTATTTTCGTGGACTGGAGAAGAAAATCGGTTCGACGCTTTGTCGAGGAGGCTGATTTTTTGAAATTAGTGGAAAATCAATCAAGGCATGGTTCGATAAGCAATGCAGAAGTCACGCAGAGCTCAATTGAAAAGAAAGCAGGCTCTAAAGGGAACCTCTTCAGGCAGGAAGCGACTGTATGAGGTCTCGTTTACGCTGGTTTTTGTTGCATGGGGGCTCTTATTTTTCCTTAATTCTCGACCTGGTCGGAGCGATGGCTTTCGAGATAATGATAGAGGTACAGAGCCAGTGTATGGCTGGAACTCAACATTAAATGGTCAGTATAAAAAGGAGTATCCCGAAAACGAACTGTTTGAATTCCAGAATGAAGGGAATAAATTAGACCATGCACAGTATTGTACGGCGCCTTCTTCTGCTGATGATGTCGAAAATACTATCGTTATGCCAATTGTGGTGAATGCATATGATATTGAAGGAGATTATTTAAAGGAATCAAATCAAAGCAACAATGAAGAATCTCAGGTTGATCCTGAGAATAATGTTGACCAGGAAATGCCAAACCCTGAATCAGATGAGCCTGAAATAGTTAGTAATTGCATGCTTACTGAAGAAAATTCAATGGTGACTGCTTTATTTATTGACGACGCTAGTAAAGTTGACCAATCTGTAGATAGTTTTCCTGCTTCTGAAGGTCCAGCACAAGCTGACACTGCTATTTCTCAAATTAGTGTGACCGAAAATAAAGAAATACATCCACAAACTCATAGATCATCTCGTGTTACTCCCGTAGGTTTAAATGAGTTTAAGAAGAAAGCTAGCAATGAAAAGGATCGGCCTACCAGTAATCAATTTGGAATCATCACGCACAGGCGTGAACCTGGAGGAAGTGAATACAATTATGCTGCTGCTTCCAAGGGAGCCAAAATTCTAGCCCACAATAAAGAAGTAAAAGGTGTTCAAAATATCCTTGACAAAGACCAGGATAAGTATCTTCGGAATCCCTGCAGTGCAGAAGAAAAATTCGTTGTTATAGAGCTTTCTGAGGAAACATTGGTTGATACAGTAGCAATTGCAAATTTCGAACATTATTCATCTAAACTGAAGGATTTTGAGCTTTTTAGTAGTTTAGTTTACCCTACTGATGATTGGGTTCTTCTTGGGAATTTTACTGCTGGAAATGTTAAGCATGTCCAGAGGTTCGCTCTTCAAGAACCTAAATGGGCACGGTATTTGAAATTGCGATTCCTTAGCCACTATGGTTCTGAATTTTTTTGCACTCTAAGTACTGTGGAAGTTTATGGAGTTGATGCTATTGAGCGTATGCTTGAAGACTTGATTGCAGTTGGAGAGCATGGTTTGAGAAATACTGATTTCTCTGGTGAGCCATCATCAATCCATGCAATAGGAGCAGTTCCTTTGCCAGATGAAAAGGGCTCAAATAGCATTGATGAGATTCATATGCTTTTTGATGGTTTAGAAGAAAAAGAAACAGACCTCAAGTTAAGAGAAGATGCTTCTAAAGCGAGTTCCCCTGATCCCACAATAGAAATTATCCAACAGCAGGGTGGAAGGATGGCAGGAGACACTGTTCTGAAGATTTTGATGCAGAAAGTGAGATCACTTGAATTGAATCTTTCTGTTTTAGAGAGATACCTGGAAGAGTTGAGTTTTCGATATGGCGATCTCTTCGCTGATCTTGACAAGGAACTAGAAGAAAACACTCTGTATTTACGTCAAATCAGGACAGAGTTAAACCATTTGCAGGAGCACAAGAAGATGATGGAGGAAGAGATAAGCGAATACAGGTCTTGGAGATTGACAATTTCAGATAAGCTGGATGAATTGGCAATGGTTAACAACTTCCTTAGGTTAGAGGTTCAGAATAATCATTTACGAGTTCAGCATATGGAGAATAAGGAGACTGTAGTGTTCGGCGTGAGTTTCATTTTTGTCTGCATAGCAGTAATGAAAATTAGTTTAGATTATATTGTAACAGTATTTAGGCTTTGTAAAGTTGAGAATAAACGAAGCTCAGCTTGGTTTTTTGTACTGTTGAGCAGCAGTTTGGTTGCTTTTATTCTTTCCTTGTAATCAAACCTCCATTTCCATGCAAAACAGATATTTTATCTCACCACTTGCAATGGAAATCTGGCCGCTGTAAAATAATGTGGCTGTGTATGATCAGAGCACCATTCTTTTTTGCTGAAATCTTCTATATTCATAAATTT

Ace file of the UniGene sp_v1.1_unigene8368

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Membrane protein CH1-like n=3 Tax=Oryza sativa RepID=Q8LR16_ORYSJ	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	membrane protein ch1-like	-	-	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Galactose-binding domain-like	IPR008979	-	0.0	58%
Blast2go	Sad1/UNC-like, C-terminal	IPR012919	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM10

Fln msg:

Fln protein: MQKSRRAQLKRKQALKGTSSGRKRLYEVSFTLVFVAWGLLFFLNSRPGRSDGFRDNDRGTEPVYGWNSTLNGQYKKEYPENELFEFQNEGNKLDHAQYCTAPSSADDVENTIVMPIVVNAYDIEGDYLKESNQSNNEESQVDPENNVDQEMPNPESDEPEIVSNCMLTEENSMVTALFIDDASKVDQSVDSFPASEGPAQADTAISQISVTENKEIHPQTHRSSRVTPVGLNEFKKKASNEKDRPTSNQFGIITHRREPGGSEYNYAAASKGAKILAHNKEVKGVQNILDKDQDKYLRNPCSAEEKFVVIELSEETLVDTVAIANFEHYSSKLKDFELFSSLVYPTDDWVLLGNFTAGNVKHVQRFALQEPKWARYLKLRFLSHYGSEFFCTLSTVEVYGVDAIERMLEDLIAVGEHGLRNTDFSGEPSSIHAIGAVPLPDEKGSNSIDEIHMLFDGLEEKETDLKLREDASKASSPDPTIEIIQQQGGRMAGDTVLKILMQKVRSLELNLSVLERYLEELSFRYGDLFADLDKELEENTLYLRQIRTELNHLQEHKKMMEEEISEYRSWRLTISDKLDELAMVNNFLRLEVQNNHLRVQHMENKETVVFGVSFIFVCIAVMKISLDYIVTVFRLCKVENKRSSAWFFVLLSSSLVAFILSL*

Protein Length: 664

Fln nts: CGTCGTGACCTTGGCTGTCACCAATTTTGAGTATGAATGCATGGCCTCTGTAAGGTTCGATCCATTTTGTTGAAGGTCTAAAGTAAGTTGGAGTAAGGATTTATTTATTTTCGTGGACTGGAGAAGAAAATCGGTTCGACGCTTTGTCGAGGAGGCTGATTTTTTGAAATTAGTGGAAAATCAATCAAGGCATGGTTCGATAAGCA_-_ATGCAGAAGTCACGCAGAGCTCAATTGAAAAGAAAGCAGGCTCTAAAGGGAACCTCTTCAGGCAGGAAGCGACTGTATGAGGTCTCGTTTACGCTGGTTTTTGTTGCATGGGGGCTCTTATTTTTCCTTAATTCTCGACCTGGTCGGAGCGATGGCTTTCGAGATAATGATAGAGGTACAGAGCCAGTGTATGGCTGGAACTCAACATTAAATGGTCAGTATAAAAAGGAGTATCCCGAAAACGAACTGTTTGAATTCCAGAATGAAGGGAATAAATTAGACCATGCACAGTATTGTACGGCGCCTTCTTCTGCTGATGATGTCGAAAATACTATCGTTATGCCAATTGTGGTGAATGCATATGATATTGAAGGAGATTATTTAAAGGAATCAAATCAAAGCAACAATGAAGAATCTCAGGTTGATCCTGAGAATAATGTTGACCAGGAAATGCCAAACCCTGAATCAGATGAGCCTGAAATAGTTAGTAATTGCATGCTTACTGAAGAAAATTCAATGGTGACTGCTTTATTTATTGACGACGCTAGTAAAGTTGACCAATCTGTAGATAGTTTTCCTGCTTCTGAAGGTCCAGCACAAGCTGACACTGCTATTTCTCAAATTAGTGTGACCGAAAATAAAGAAATACATCCACAAACTCATAGATCATCTCGTGTTACTCCCGTAGGTTTAAATGAGTTTAAGAAGAAAGCTAGCAATGAAAAGGATCGGCCTACCAGTAATCAATTTGGAATCATCACGCACAGGCGTGAACCTGGAGGAAGTGAATACAATTATGCTGCTGCTTCCAAGGGAGCCAAAATTCTAGCCCACAATAAAGAAGTAAAAGGTGTTCAAAATATCCTTGACAAAGACCAGGATAAGTATCTTCGGAATCCCTGCAGTGCAGAAGAAAAATTCGTTGTTATAGAGCTTTCTGAGGAAACATTGGTTGATACAGTAGCAATTGCAAATTTCGAACATTATTCATCTAAACTGAAGGATTTTGAGCTTTTTAGTAGTTTAGTTTACCCTACTGATGATTGGGTTCTTCTTGGGAATTTTACTGCTGGAAATGTTAAGCATGTCCAGAGGTTCGCTCTTCAAGAACCTAAATGGGCACGGTATTTGAAATTGCGATTCCTTAGCCACTATGGTTCTGAATTTTTTTGCACTCTAAGTACTGTGGAAGTTTATGGAGTTGATGCTATTGAGCGTATGCTTGAAGACTTGATTGCAGTTGGAGAGCATGGTTTGAGAAATACTGATTTCTCTGGTGAGCCATCATCAATCCATGCAATAGGAGCAGTTCCTTTGCCAGATGAAAAGGGCTCAAATAGCATTGATGAGATTCATATGCTTTTTGATGGTTTAGAAGAAAAAGAAACAGACCTCAAGTTAAGAGAAGATGCTTCTAAAGCGAGTTCCCCTGATCCCACAATAGAAATTATCCAACAGCAGGGTGGAAGGATGGCAGGAGACACTGTTCTGAAGATTTTGATGCAGAAAGTGAGATCACTTGAATTGAATCTTTCTGTTTTAGAGAGATACCTGGAAGAGTTGAGTTTTCGATATGGCGATCTCTTCGCTGATCTTGACAAGGAACTAGAAGAAAACACTCTGTATTTACGTCAAATCAGGACAGAGTTAAACCATTTGCAGGAGCACAAGAAGATGATGGAGGAAGAGATAAGCGAATACAGGTCTTGGAGATTGACAATTTCAGATAAGCTGGATGAATTGGCAATGGTTAACAACTTCCTTAGGTTAGAGGTTCAGAATAATCATTTACGAGTTCAGCATATGGAGAATAAGGAGACTGTAGTGTTCGGCGTGAGTTTCATTTTTGTCTGCATAGCAGTAATGAAAATTAGTTTAGATTATATTGTAACAGTATTTAGGCTTTGTAAAGTTGAGAATAAACGAAGCTCAGCTTGGTTTTTTGTACTGTTGAGCAGCAGTTTGGTTGCTTTTATTCTTTCCTTGTAA___TCAAACCTCCATTTCCATGCAAAACAGATATTTTATCTCACCACTTGCAATGGAAATCTGGCCGCTGTAAAATAATGTGGCTGTGTATGATCAGAGCACCATTCTTTTTTGCTGAAATCTTCTATATTCATAAATTT

Fln Alignment:

sp_v1.1_unigene8368___MQKSRRAQLKRKQALKGTSSGRKRLYEVSFTLVFVAWGLLFFLNSRPGRSDGFRDNDRGTEPVYGWNSTLNGQYKKEYPENELFEFQNEGNKLDHAQYCTAPSSADDVENTIVMPIVVNAYDIEGDYLKESNQSNNEESQVDPENNVDQEMPNPESDEPEIVSNCMLTEENSMVTALFIDDASKVDQSVDSFPASEGPAQADTAISQISVTENKEIHPQTHRSSRVTPVGLNEFKKKASNEKDRPTSNQFGIITHRREPGGSEYNYAAASKGAKILAHNKEVKGVQNILDKDQDKYLRNPCSAEEKFVVIELSEETLVDTVAIANFEHYSSKLKDFELFSSLVYPTDDWVLLGNFTAGNVKHVQRFALQEPKWARYLKLRFLSHYGSEFFCTLSTVEVYGVDAIERMLEDLIAVGEHGLRNTDFSGEPSSIHAIGAVPLPDEKGSNSIDEIHMLFDGLEEKETDLKLREDASKASSPDPTIEIIQQQGGRMAGDTVLKILMQKVRSLELNLSVLERYLEELSFRYGDLFADLDKELEENTLYLRQIRTELNHLQEHKKMMEEEISEYRSWRLTISDKLDELAMVNNFLRLEVQNNHLRVQHMENKETVVFGVSFIFVCIAVMKISLDYIVTVFRLCKVENKRSSAWFFVLLSSSLVAFILSL
B8LM10______________MQKSRRAQLKKKQALEQSFLGRKRLYEVSFTLVFVAWGLLFFLNSRTGRSDGFRDADGSRQPVYGGNSTSNGQHKNEYPKNEQLAFQNEGNKFDRVQYCTALSSADDVENTIAMPNAVNTYVIEGDSLKELNQSNNEESQVDFENNVDQEIPNPASDEPEIASNCTLTEDNSSVTALFIDEPSKVEQSVDSFPASEGPAQADTAVSQSILTEYKETHPQTHRSSRATPVGLDEFKKKASNEKDRPTGNQFGIITHRREPGGSEYNYAAASKGAKILAHNKEVKGVQSILDKDQDKYLRNPCSAEEKFVVIELSEETLVDTVAIANFEHYSSNLKDFELFSSLVYPTDDWVLLGNFTAGNVKHVQRFTLQEPKWARYLKLRFLNHYGSEFFCTLSTVEVYGVDAIERMLEDLIAVGKHGLRNIDLSGEPSSTHAIGATPLPDEKGSNSFDELHLLFDG-KEPHGGLPEKEDASKANSPDPTVEMIQQKGGRMPGDTVLKILMQKVRSLELNLSVLEKYLEELTIRYGDLFSELDKELDENTLYLHQIREELNHLQEHKKMMEEEIGEYRSWKFTISNKLDELAMDNNFLRLEVQNNHLRVQHMESKETVVFGVSFIFVCIAVMKISLDFIVTIFRLCKVENKRSSAWVFLLLSSSLVSFILSL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
215	90			10	0.90298
216			90	10	0.90298
218		90	10		0.90298
219	90		10		0.90298
220		90	10		0.90298
221			90	10	0.90298
228		10		90	0.90298
462	87	12			0.992554
538	75		25		1.0
552	71			28	1.0
570		14		85	0.993533
1703	83			16	0.994512
1704	16			83	0.994512
1789		85		14	0.993533
2042	10		90		0.90298
2203	21	78			1.0
2273	14			85	0.993533
2275		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain