SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8363

Length: 1087 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8363

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Universal stress protein family protein n=2 Tax=Zea mays RepID=B6TTX5_MAIZE	-	-	6.0e-36	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	universal stress protein family protein	-	-	6.91659e-37	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UspA	IPR006016	-	6.91659e-37	66%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	6.91659e-37	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLK6

Fln msg: your sequence is longer than subject: 232 - 172

Fln protein: MWEGSSVLRQLSRRDSCSSSVSRSWSKRVPKSCVTEETTLTHEWDCEWWDWEDSLELTVINGVNDITRKKVMVLVDGSREAKIATLWALCYLLNCVDTLALLHVFDSSRTTSKCKPDLSRRRYAQGCDLVNSMRALCRARRPEVEVEAMVMQGEKGSTIVSQAKKLQVSILIMGQRKPSLFRRFLRSKKEELIEYCIENAECLTLAVRKQSSGIGGYVINSRWHKDFWLLA*

Protein Length: 233

Fln nts: ATTGGGAGACGAACGGATAATGCCTTTCCTTTAATCCTCCCGCTCCAATCCATTCCGTCTGAGTTCGAATCCAGCTTTTTCAATAGTGGCCCAGCCAGCGGACTGTATAAGAGGATGTTCGCACGAAATCTGGATCGACACGATCCACTTCCATCCCGATAGTAACAGGCAGCGGAGACTGGAAAGATAATT_-_ATGTGGGAGGGCAGCTCGGTTCTGAGACAGCTGAGCAGAAGAGATTCGTGCAGTAGTAGTGTTTCGAGGAGCTGGAGTAAGAGAGTTCCCAAATCATGCGTAACAGAAGAGACTACCCTCACCCATGAATGGGACTGCGAATGGTGGGACTGGGAAGACTCATTGGAGCTCACCGTTATTAATGGAGTCAATGACATAACGAGGAAGAAGGTGATGGTGCTTGTGGATGGCTCTCGGGAGGCCAAGATCGCCACATTATGGGCGCTCTGCTACCTTCTCAACTGCGTCGATACGCTCGCGTTGCTCCATGTTTTTGACTCCTCTAGAACCACTTCCAAATGCAAACCGGACCTCAGCAGGCGCCGCTACGCCCAGGGATGCGATCTTGTCAACTCCATGCGGGCGCTCTGCAGAGCACGCAGGCCAGAGGTGGAAGTGGAAGCTATGGTAATGCAAGGAGAAAAGGGTAGTACAATCGTGTCCCAAGCCAAGAAACTGCAAGTTTCTATCCTGATAATGGGTCAAAGAAAACCCTCCTTATTCAGAAGGTTTCTGCGGAGCAAGAAGGAGGAGTTGATAGAGTATTGTATTGAGAACGCGGAATGTCTGACATTGGCCGTGAGAAAGCAGAGCAGCGGCATCGGCGGCTACGTGATCAACAGCAGGTGGCACAAAGATTTCTGGCTTCTGGCATAA___TAGCCATGGCCGCCATACTATAAGCTATTGTTGCTTAATAACATGTGTATATAGTCCATCTATGTATTTATCACTGGTGTGGCTTGCTTGTATACTTGCATTTACTTAATGCTTGCGGCGATCCAGAGTGTTGTTATATTTGAGATTGAGGGTTGCTTTAAAGTTTAGTCTATTGAAAGTTAACTTTCTTGGCTTAGGT

Fln Alignment:

sp_v1.1_unigene8363___KKVMVLVDGSREAKIATLWALCYLLNCVDTLALLHVFDSSRTTSK-----CKPDL---SRRRYAQGCDLVNSM-------------RALCRARRPEVEVEAMVMQGEKGSTIVSQAKKLQVSILIMGQRKPSLFRRFLRSKKEELIEYCIENAECLTLAVRK
A9NLK6______________KTVVVAVDESEESMSALLWACKYLLPA----QCPHGNNTQQLPCKFILVHIQPDTCFAAGPAYIASEDLVNLLEMDARRTTQKIFKRALCICRDNNVKAETEVFVGEVKQRLCEAAGKLGVDFLVMGSHSHGFFKRMCRVIVGSLSDYCCQKAACPVVVVNK

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
137		66	33		0.997452
138		66	33		0.997452
163	33		66		1.0
182		33		66	0.997452
300			75	25	0.996473
301	75		25		0.996473
302	75		25		0.996473
419	40		60		1.0
467		60		40	1.0
503		83		16	0.994512
565	14	85			0.993533
566		85		14	0.993533
567		85	14		0.993533
568	85		14		0.993533
581		42		57	1.0
609	20		80		0.995493
645	83		16		0.994512
689	80		20		0.995493
707	20		80		0.995493
755		80		20	0.995493
854		80		20	0.995493
909		20		80	0.995493
948	80	20			0.995493
957	12			87	0.992554
959			12	87	0.992554
960	87		12		0.992554
961			12	87	0.992554
1058	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain