SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8362

Length: 2702 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8362
CGTCGTGACCTTGGCTGTCATTGGGGACGTATTTCCATCTTCCTTTACATTTCCAGGGGTCAAAGAGCAGCACAAAACAGAAGCGCCGAAACCGAGACACTCAGTCATTCGTAAGCGCCTTTCCGCAAATTTTCTCTGAAAAAGCCGCCAAATCTAGCCAGTCCCCAAATCCCCGCTAACTCCACTCGATTGCCAGGACAGAGCGCCGCTGTTTTAGCCCCGGAAAAGCCGAACACAGAAACCCCGAACATCGCCCTCGGTAGCGTCCGTGAACCGTCTGAAATTCCCCCTGAACCCAAGCACTCCGTCACAGATCCATGTGACTGGGTGCTGAACAATGGCGGGATCATATCCTTACAGAATTCCCCCGCAGCAGAACGCCCTGGCCTCCAAGATATTGCTACTTCTGACGGCACTGCCGCTAACTTTAGCGCTGTTCGCTTTCGTTCTACAGTGGAGAGGGGGCCTGAACGATCCAGCCGGTCGATGGGCCGGAGATGGCAATAAATTTCCTGGTATGAGCACCGATTCGCCCTCTAATGGCCATTCTGTTACCGGTTCGGACTGCTCGGATCGGTTGGCTCAAAGCGTGACGCCGACATTTCCGTATTACAGAGGTTGGACGTTCGAATTCGCCGCAGATACACGCCCTAAGATATGTATTACTACAAGCACTTCAGCAGGGCTCGATCAGATTCTTCCTTGGATATATTACCATAAAGTCATTGGTGTAACCAACTTTCTTTTATTTGTGGAGGGGAAGGCAGCTGCAGCAAATACTACTGCTGTTTTGGAGAACATTCTGGGTGTGAAAGTTGTGCATCGAACAAAAGATCTAGAGGAGAAACAGGCAAAAAGTCGAATTTGGAATGAAACTTGGCTTTCAAGCTTCTTTTTCCGGCCATGCAACTATGAACTCTTTGTAAAGCAATCGCTAAATATGGAGATGGCAATTGTGATGGCAAGGGAAGCTAACATGGATTGGATTATTCATCTTGATACCGATGAGCTTCTTCATCCAGCAGGTGCCAGAGAGTACTCACTGAGGCAATTGCTATTAGATGTTCCAAATAATGTTGATATGGTGGTCTTCCCAAATTATGAGAGTGCCATTGAAAGAGATGACATAAAGGAGCCTTTTAGCGAGGTATCAATGTTTAAGAAGAATTATGATCATGTTACGAAGGAGACATATTTTGGGTTATATAAGGAGGCAACTCGAGGGAATCCAAATTACTTTTTAACATACGGTAATGGAAAAGCTGCTGCACGAGTTCAAGATCACCTTCGCCCAAATGGTGCACATCGTTGGCATAATTATATGAAAACACCAAATGAGATAAAGTTGGAAGAAGCTGCAGTATTGCACTACACTTACACAAAGTTCAGTGATTTGACTTCAAGGAGAGACCGTTGTGGTTGCAAGCCTACAAAGGAGGATGTCAAGAGATGCTTCATGCTGGAATTTGACCGTTCTGCATTCATAATCGCTTCTACTGCAACAGAGGAGGAGATGCGCCACTGGTACCGTGATCGCATAGTTTGGACTGACAAGGATTTGAATTTGAAGCTCATGAGAAAGGGTCTGTTGACACGGATATATGCTCCAATGGTCATAGTTCAAGGTTTGAAGGAGGCTGGTGTTTTCAGCAATGCTTTGGCATCTGGGCATGCTGTTCTTAAAAAATCAATGTCTAGAGAGCAGTTCTTGTCATCTGTGTCTGTTTCGAACAGAACTAATTCATCTGTAGCACAGGCTGTTGAAAATAAAGATGGGGATAAGCACCAAGCAAAGTTACTAGAAAAAGTTGGAGAAGGTGAAACTCATGCAGCAACTAGAAAGCTCCTAGAAACATCAATTCACACAGTTATGGCAGTGCCTCCCTTGGCACCTCCATCTTTAGATGTCTACACTGGAAGTTTCTAGGATAATGTGTCTGATTATTTTCATCAATCAATGCATAGCATCTTTCAAAGATTCAGACAGGAATGGTGCTTATGTTTGTCAGATTCATTTAATTTTCAAAATTTTCACACATAGAGAATGTACAGATGGTTATGAAAGTCTACCATTTATAGAAGCCCATGATGGAGTTGAAGATAGTTTCTATGGTTCGAAGCTCTGAAGTGGTGCTTAGGTGCCTTCTGTAGAGCTTGCATTCAGTTTCCATCTTGTCTTGGACGGAGAGAAAGGCACTTTACTGACTATTCTTTGAAGTCCAAATCTGGTTTCAGTCTGGATCGAGGCCTTCCAATGAGTAGAAATATTCCCGATCATTACCCAAGCGCAGCTGTAAAATTAATTTTTGTAGTTGGCAATCTCCTAGATTAGATTGCAGCCATTCAGTTCCTGTGGAATAACAAATGCACTATTGCTTCATATTGCTTTGTTGAGCACTGACAGCATTACTGTCATATTTTGCACAGTAAACTGTCATATATTAGGGGTGTTAACATGGATGCAGAGGAATTGCGAGGATACTCTATTTGGTGCTATTAAACTGACTGATTCAAATTTTGTCTCTGATTTGTCTGATTTCTGATATAAACCTCAGAATAGAATAGAAAGATTATTGTTAGCACCTATCACATCATTTGAATATAAACCTACATTTTTAAGATCTTGTATATTTGGAATCTTTGGCCAAAATTCAATTTATGGATAAGCTCCAAAGAAAAACTCCAGATGATTTTTTCTGCTT

Ace file of the UniGene sp_v1.1_unigene8362

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	69%
Blast2go	protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	78%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	78%
Blast2go	plant-type cell wall modification involved in multidimensional cell growth	GO:0009831	Biological Process	78%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	78%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D7SQ21

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MAGSYPYRIPPQQNALASKILLLLTALPLTLALFAFVLQWRGGLNDPAGRWAGDGNKFPGMSTDSPSNGHSVTGSDCSDRLAQSVTPTFPYYRGWTFEFAADTRPKICITTSTSAGLDQILPWIYYHKVIGVTNFLLFVEGKAAAANTTAVLENILGVKVVHRTKDLEEKQAKSRIWNETWLSSFFFRPCNYELFVKQSLNMEMAIVMAREANMDWIIHLDTDELLHPAGAREYSLRQLLLDVPNNVDMVVFPNYESAIERDDIKEPFSEVSMFKKNYDHVTKETYFGLYKEATRGNPNYFLTYGNGKAAARVQDHLRPNGAHRWHNYMKTPNEIKLEEAAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRSAFIIASTATEEEMRHWYRDRIVWTDKDLNLKLMRKGLLTRIYAPMVIVQGLKEAGVFSNALASGHAVLKKSMSREQFLSSVSVSNRTNSSVAQAVENKDGDKHQAKLLEKVGEGETHAATRKLLETSIHTVMAVPPLAPPSLDVYTGSF*

Protein Length: 531

Fln nts: CGTCGTGACCTTGGCTGTCATTGGGGACGTATTTCCATCTTCCTTTACATTTCCAGGGGTCAAAGAGCAGCACAAAACAGAAGCGCCGAAACCGAGACACTCAGTCATTCGTAAGCGCCTTTCCGCAAATTTTCTCTGAAAAAGCCGCCAAATCTAGCCAGTCCCCAAATCCCCGCTAACTCCACTCGATTGCCAGGACAGAGCGCCGCTGTTTTAGCCCCGGAAAAGCCGAACACAGAAACCCCGAACATCGCCCTCGGTAGCGTCCGTGAACCGTCTGAAATTCCCCCTGAACCCAAGCACTCCGTCACAGATCCATGTGACTGGGTGCTGAACA_-_ATGGCGGGATCATATCCTTACAGAATTCCCCCGCAGCAGAACGCCCTGGCCTCCAAGATATTGCTACTTCTGACGGCACTGCCGCTAACTTTAGCGCTGTTCGCTTTCGTTCTACAGTGGAGAGGGGGCCTGAACGATCCAGCCGGTCGATGGGCCGGAGATGGCAATAAATTTCCTGGTATGAGCACCGATTCGCCCTCTAATGGCCATTCTGTTACCGGTTCGGACTGCTCGGATCGGTTGGCTCAAAGCGTGACGCCGACATTTCCGTATTACAGAGGTTGGACGTTCGAATTCGCCGCAGATACACGCCCTAAGATATGTATTACTACAAGCACTTCAGCAGGGCTCGATCAGATTCTTCCTTGGATATATTACCATAAAGTCATTGGTGTAACCAACTTTCTTTTATTTGTGGAGGGGAAGGCAGCTGCAGCAAATACTACTGCTGTTTTGGAGAACATTCTGGGTGTGAAAGTTGTGCATCGAACAAAAGATCTAGAGGAGAAACAGGCAAAAAGTCGAATTTGGAATGAAACTTGGCTTTCAAGCTTCTTTTTCCGGCCATGCAACTATGAACTCTTTGTAAAGCAATCGCTAAATATGGAGATGGCAATTGTGATGGCAAGGGAAGCTAACATGGATTGGATTATTCATCTTGATACCGATGAGCTTCTTCATCCAGCAGGTGCCAGAGAGTACTCACTGAGGCAATTGCTATTAGATGTTCCAAATAATGTTGATATGGTGGTCTTCCCAAATTATGAGAGTGCCATTGAAAGAGATGACATAAAGGAGCCTTTTAGCGAGGTATCAATGTTTAAGAAGAATTATGATCATGTTACGAAGGAGACATATTTTGGGTTATATAAGGAGGCAACTCGAGGGAATCCAAATTACTTTTTAACATACGGTAATGGAAAAGCTGCTGCACGAGTTCAAGATCACCTTCGCCCAAATGGTGCACATCGTTGGCATAATTATATGAAAACACCAAATGAGATAAAGTTGGAAGAAGCTGCAGTATTGCACTACACTTACACAAAGTTCAGTGATTTGACTTCAAGGAGAGACCGTTGTGGTTGCAAGCCTACAAAGGAGGATGTCAAGAGATGCTTCATGCTGGAATTTGACCGTTCTGCATTCATAATCGCTTCTACTGCAACAGAGGAGGAGATGCGCCACTGGTACCGTGATCGCATAGTTTGGACTGACAAGGATTTGAATTTGAAGCTCATGAGAAAGGGTCTGTTGACACGGATATATGCTCCAATGGTCATAGTTCAAGGTTTGAAGGAGGCTGGTGTTTTCAGCAATGCTTTGGCATCTGGGCATGCTGTTCTTAAAAAATCAATGTCTAGAGAGCAGTTCTTGTCATCTGTGTCTGTTTCGAACAGAACTAATTCATCTGTAGCACAGGCTGTTGAAAATAAAGATGGGGATAAGCACCAAGCAAAGTTACTAGAAAAAGTTGGAGAAGGTGAAACTCATGCAGCAACTAGAAAGCTCCTAGAAACATCAATTCACACAGTTATGGCAGTGCCTCCCTTGGCACCTCCATCTTTAGATGTCTACACTGGAAGTTTCTAGGATAATGTGTCTGATTATTTTCATCAATCAATGCATAGCATCTTTCAAAGATTCAGACAGGAATGGTGCTTATGTTTGTCAGATTCATTTAATTTTCAAAATTTTCACACATAGAGAATGTACAGATGGTTATGAAAGTCTACCATTTATAGAAGCCCATGATGGAGTTGAAGATAGTTTCTATGGTTCGAAGCTCTGAAGTGGTGCTTAGGTGCCTTCTGTAGAGCTTGCATTCAGTTTCCATCTTGTCTTGGACGGAGAGAAAGGCACTTTACTGACTATTCTTTGAAGTCCAAATCTGGTTTCAGTCTGGATCGAGGCCTTCCAATGAGTAGAAATATTCCCGATCATTACCCAAGCGCAGCTGTAAAATTAATTTTTGTAGTTGGCAATCTCCTAGATTAGATTGCAGCCATTCAGTTCCTGTGGAATAACAAATGCACTATTGCTTCATATTGCTTTGTTGAGCACTGACAGCATTACTGTCATATTTTGCACAGTAAACTGTCATATATTAGGGGTGTTAACATGGATGCAGAGGAATTGCGAGGATACTCTATTTGGTGCTATTAAACTGACTGATTCAAATTTTGTCTCTGATTTGTCTGATTTCTGATATAAACCTCAGAATAGAATAGAAAGATTATTGTTAGCACCTATCACATCATTTGAATATAAACCTACATTTTTAAGATCTTGTATATTTGGAATCTTTGGCCAAAATTCAATTTATGGATAAGCTCCAAAGAAAAACTCCAGATGATTTTTTCTGCTT

Fln Alignment:

sp_v1.1_unigene8362___QWRGGLNDPAGRWAGDGNKFPGMSTDSPSN-GHSVTGSDCSDRLAQSVTPTFPYYRGWTFEFAADTRPKICITTSTSAGLDQILPWIYYHKVIGVTNFLLFVEGKAAAANTTAVLENILGVKVVHRTKDLEEKQAKSRIWNETWLSSFFFRPCNYELFVKQSLNMEMAIVMAREANMDWIIHLDTDELLHPAGAREYSLRQLLLDVPNNVDMVVFPNYESAIERDDIKEPFSEVSMFKKNYDHVTKETYFGLYKEATRGNPNYFLTYGNGKAAARVQDHLRPNGAHRWHNYMKTPNEIKLEEAAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRSAFIIASTATEEEMRHWYRDRIVWTDKDLNLKLMRKGLLTRIYAPMVIVQGLKEAGVFSNALASGHAVLKKSMSREQFLXXXXXXXXXXXXXAQAVENKDGDKHQAKLLEKVGEGETHAATRKLLE--TSIHTVMAVPPLAPPSLD
D7SQ21______________QWRGGVTDPATRWSPEAHKFPGMDSSPPTTIGHS-SASDCV-LLSRGSSPSFPYYRDWKFDVGSDLRPKICITTSTSAGLEQILPWMFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIFRTKELEEQQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARNAGMDWILHLDTDELMHPAGATEYSLRQLLHDVPGNVDMVIFPNYESSIERDDIKEPFSEVSMFKKNYDHLPKDTYFGMYKESTRGNPNYFLTYGNGKSVARIQDHLRPNGAHRWHNYMKTPNEIKLEEAAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRAAFIIASTATEEEMLNWYREHIVWTDKALNMKLLRKGILTRIYAPMAIIQGLRESGVFSSVIASAPTTL----SKDKFLSTIGSTNSSRAVASESLPSRKFGRSK----------ESQATARKALEIADAASHKAAVPPLSPPGMD

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
494		81	18		1.0
535	10	90			0.90298
536		90	10		0.90298
538		90	10		0.90298
540	90		10		0.90298
542		10		90	0.90298
559			77	22	0.999999
1147	87		12		0.992554
1204		14		85	0.993533
1247	85		14		0.993533
1249	85		14		0.993533
1250		85	14		0.993533
1321	83		16		0.994512
1642	11		88		0.992527
1643	11			88	0.992527
1644	11		88		0.992527
1645	11			88	0.992527
1646		11		88	0.992527
1691	83		16		0.995451
1932	75	25			0.996473
2031	11			88	0.923564
2033			11	88	0.923564
2034		88	11		0.923564
2035	88		11		0.923564
2063	90		10		0.90298
2217	87	12			0.999964
2218	87			12	0.999964
2223	87			12	0.999964
2224	87	12			0.999964
2530		10		90	0.90298
2639		20		80	0.995493
2644			33	66	0.997452
2646		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain