SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8357

Length: 908 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8357

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	70%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	70%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	70%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	70%
Blast2go	WD40 repeat, conserved site	IPR019775	-	70%
Blast2go	WD40 repeat, subgroup	IPR019781	-	70%
Blast2go	WD40 repeat 2	IPR019782	-	70%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
308			33	66	0.997452
309		66	33		0.997452
462	85	14			0.993533
465		14		85	0.993533
466	85		14		0.993533
468			14	85	0.993533
470	85	14			0.993533
471	85	14			0.993533
472			85	14	0.993533
473	85			14	0.993533
474	83		16		0.994512
476	83	16			0.994512
478		83	16		0.994512
480		16	83		0.994512
481	16		83		0.994512
482	83	16			0.994512
484	16		83		0.994512
597	50	50			1.0
714	55		44		1.0
750	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain