SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8350

Length: 2418 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene8350
GAATCCGGTGCACTGTAAAGAACTGTGCTCAAATCAGAGAACAATTCTTTACAGTGCACCGAAAAGAAAATTCATTCCCAAAAGTCTTTATTTTCCGCAAGTGGGACATATTAAATATTTTGAGAGAAATACTGAAATTGGACAAGCGTTGAGAAATTTAGTCGAATGCTGAGTTATGGACTCTGATTTCGGCGTGGAACGGCAGACTTTTGAAGCTGTTCCTGATTCTAAGTCGTTGGCTAGCCTTCACTCTTCGTTAAGTTGTTCATTAAACACAATGGACACCATTTTTTGTGACGAGTCTCGCTATTCTCAGAAATACGCTGGAGAATTTGGAGAAATTGCTACCCAGAATGCCTTTGGAGGAGCTACCGAGAGTATTATTAGTAATGTGGATGGAGCATTTTACGCCGATCCGTCATTTGCAGCTAAATATTTACGGAAGTCAAGTTTTTCACCCGTAATGGCTAAAGAAAGCTCCAATGCCGACGGTTCCGGAGGCATCGGAGTGCACAATGTTCCAATTTTGGCAAATTCTGTTCAATTTCATACGGCAGGCGTTAAAAATGGCGTGAATACAACGGGATGGAGAAATTTGGACGCTTCGCATCTCGGCTCCGAGGTTTCCAAATTTAGCATTGGAAGTGTACCGAGTGCCTTGGTGCAATTTCCTTCGGACCCAGGCTTTGTGGAGCAGGCGCCGAAATTTTCTTCTTTCAACAACATGGATCGCAATTCTTCGGAAAACGTCGGTTGCGGGGCTTCGAACCTGCGACCTGTTGTCGGAGCAGTCCAACAAGGAGGGGAAACCATGAGCGTTTTTTCTGAACCGAACAAACGAGTAGATGATGGCATCGGGAAGAAAAGAAGAGCTAAATCTTTGACTTCAGTAGACAATGGCAAGGAACAAGAGGAGGCTAAAGCCAAAAGGTGCAGACTTGGCGAGAGTAGTGAAATTGATGACGATGATAACAATGAGGAGACCTCTGACTCCAACTCAAAGAAGGGAAAGGAGAAGAATCCAAAGGTTGCTCAGAAGGACGATAATTATATTCATGTTAGGGCAAGGAGAGGCCAGGCTACTGACAGCCATAGCTTAGCTGAAAGGGTGAGAAGAGAAAAGATCAATCAAAGAATGAAATTCTTGCAGGACCTGGTACCTACGTGTAACAAGGTAACTGGTAAAGCAGTAATGCTTGACGAGATCATCAACTATGTTCAATCTCTTCAACACCAAGTAGAGTTCTTGTCCATGAAATTGGCTACAGTCAACCCAAAACTTGACTTTAACATCGACAATTTCTTTGCCAAAGAGATGTCTGGAAGCTTCTCGAGCAAGGGAATGTCTCCTACATACTTCCATTTGGACCAACTGAAGCAGGCTTCTCTGCAAACGGTACCAAGTCCCGGATCGGATATACCTTCCACTATGAGTTCAGTAGACTCTGCAGAAATGTTTGATGGTACAAATTTTCAGAGGCAGGAAGGTTGGGACAGCGAGCTGCAAAATATGTATAACATGGGGTTGCTGCAAAGCAGATTGCAGCAGCATCATCAGCGACCACTCTAATACCCCAATACACTGACACTGATCTCCTCACGGCAAAACTTATCACACTTTGACTGTGTGACTTTTAGCAATGTTTGGTTGCAGTTGCAACATACATGCTACTACTTAACCTACCTACCAGGAATGTAAATATATCATGAATTCCCGGTTATCTGAGTCCCTCGAATTCTTTGCAGTTTTCATACCATCTACAGATAGATTACCCTACTAGATGGAACCGCGGTTTTTCTCTAATTTGGAAATGGTGCTAAGTCATCAATACTTTTGACTAAATCTTATTCGAAGTGTCTTGCAATAATAGCGAGGCCTTCCATAGATACTTTCCATTTTTCTGTTAACAAGCATGAGCATGAATATAAACTGTGTGCGCAAGGTTGACATTTGTCGTGTTTCTATGCTTCTGTAACGTTATAAATGCACATGAGTTCGCTGATCCTGGGGCGGCTAATACCAAACGAATTTCAGTCAACGAAGGATATAGGATTTTGGGCATTCTCTAGAAGCATTCACATTTTTAAGCAGGGTTGGTAGCTGGAATTCAAACACAGCAGACAAGCAAGTTACTGTGGCCAACGCATTCCCCGCAAACAAGCGACACAGTGAAAATTCAAAGTAAAAGGCATAACCTGTCACATTCATTACTATTTCTGTAGTATTTTAAATAATAGTGTTACCTATCTTTATGCTCCAATAAGCTAGTAGCTACAGGGTTTAAAAAGCTTTCAACTTTTTCTGTTTAATAGTGGCTATGGAATTCTTAGAACCTGGACTTTTATATGATCAAAAAGTAAATTATATAGTTGTCCTCGACTCTGTAACTAACGACATACTCGGCCTTCAATATATAT

Ace file of the UniGene sp_v1.1_unigene8350 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	basic helix-loop-helix (bHLH) family protein	-	-	1.4013e-45	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	bhlh transcription factor	-	-	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helix-loop-helix DNA-binding domain	IPR001092	-	0.0	56%
Blast2go	Helix-loop-helix DNA-binding	IPR011598	-	0.0	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUN3

Fln msg:

Fln protein: MDSDFGVERQTFEAVPDSKSLASLHSSLSCSLNTMDTIFCDESRYSQKYAGEFGEIATQNAFGGATESIISNVDGAFYADPSFAAKYLRKSSFSPVMAKESSNADGSGGIGVHNVPILANSVQFHTAGVKNGVNTTGWRNLDASHLGSEVSKFSIGSVPSALVQFPSDPGFVEQAPKFSSFNNMDRNSSENVGCGASNLRPVVGAVQQGGETMSVFSEPNKRVDDGIGKKRRAKSLTSVDNGKEQEEAKAKRCRLGESSEIDDDDNNEETSDSNSKKGKEKNPKVAQKDDNYIHVRARRGQATDSHSLAERVRREKINQRMKFLQDLVPTCNKVTGKAVMLDEIINYVQSLQHQVEFLSMKLATVNPKLDFNIDNFFAKEMSGSFSSKGMSPTYFHLDQLKQASLQTVPSPGSDIPSTMSSVDSAEMFDGTNFQRQEGWDSELQNMYNMGLLQSRLQQHHQRPL*

Protein Length: 466

Fln nts: GAATCCGGTGCACTGTAAAGAACTGTGCTCAAATCAGAGAACAATTCTTTACAGTGCACCGAAAAGAAAATTCATTCCCAAAAGTCTTTATTTTCCGCAAGTGGGACATATTAAATATTTTGAGAGAAATACTGAAATTGGACAAGCGTTGAGAAATTTAGTCGAATGCTGAGTT_-_ATGGACTCTGATTTCGGCGTGGAACGGCAGACTTTTGAAGCTGTTCCTGATTCTAAGTCGTTGGCTAGCCTTCACTCTTCGTTAAGTTGTTCATTAAACACAATGGACACCATTTTTTGTGACGAGTCTCGCTATTCTCAGAAATACGCTGGAGAATTTGGAGAAATTGCTACCCAGAATGCCTTTGGAGGAGCTACCGAGAGTATTATTAGTAATGTGGATGGAGCATTTTACGCCGATCCGTCATTTGCAGCTAAATATTTACGGAAGTCAAGTTTTTCACCCGTAATGGCTAAAGAAAGCTCCAATGCCGACGGTTCCGGAGGCATCGGAGTGCACAATGTTCCAATTTTGGCAAATTCTGTTCAATTTCATACGGCAGGCGTTAAAAATGGCGTGAATACAACGGGATGGAGAAATTTGGACGCTTCGCATCTCGGCTCCGAGGTTTCCAAATTTAGCATTGGAAGTGTACCGAGTGCCTTGGTGCAATTTCCTTCGGACCCAGGCTTTGTGGAGCAGGCGCCGAAATTTTCTTCTTTCAACAACATGGATCGCAATTCTTCGGAAAACGTCGGTTGCGGGGCTTCGAACCTGCGACCTGTTGTCGGAGCAGTCCAACAAGGAGGGGAAACCATGAGCGTTTTTTCTGAACCGAACAAACGAGTAGATGATGGCATCGGGAAGAAAAGAAGAGCTAAATCTTTGACTTCAGTAGACAATGGCAAGGAACAAGAGGAGGCTAAAGCCAAAAGGTGCAGACTTGGCGAGAGTAGTGAAATTGATGACGATGATAACAATGAGGAGACCTCTGACTCCAACTCAAAGAAGGGAAAGGAGAAGAATCCAAAGGTTGCTCAGAAGGACGATAATTATATTCATGTTAGGGCAAGGAGAGGCCAGGCTACTGACAGCCATAGCTTAGCTGAAAGGGTGAGAAGAGAAAAGATCAATCAAAGAATGAAATTCTTGCAGGACCTGGTACCTACGTGTAACAAGGTAACTGGTAAAGCAGTAATGCTTGACGAGATCATCAACTATGTTCAATCTCTTCAACACCAAGTAGAGTTCTTGTCCATGAAATTGGCTACAGTCAACCCAAAACTTGACTTTAACATCGACAATTTCTTTGCCAAAGAGATGTCTGGAAGCTTCTCGAGCAAGGGAATGTCTCCTACATACTTCCATTTGGACCAACTGAAGCAGGCTTCTCTGCAAACGGTACCAAGTCCCGGATCGGATATACCTTCCACTATGAGTTCAGTAGACTCTGCAGAAATGTTTGATGGTACAAATTTTCAGAGGCAGGAAGGTTGGGACAGCGAGCTGCAAAATATGTATAACATGGGGTTGCTGCAAAGCAGATTGCAGCAGCATCATCAGCGACCACTCTAA___TACCCCAATACACTGACACTGATCTCCTCACGGCAAAACTTATCACACTTTGACTGTGTGACTTTTAGCAATGTTTGGTTGCAGTTGCAACATACATGCTACTACTTAACCTACCTACCAGGAATGTAAATATATCATGAATTCCCGGTTATCTGAGTCCCTCGAATTCTTTGCAGTTTTCATACCATCTACAGATAGATTACCCTACTAGATGGAACCGCGGTTTTTCTCTAATTTGGAAATGGTGCTAAGTCATCAATACTTTTGACTAAATCTTATTCGAAGTGTCTTGCAATAATAGCGAGGCCTTCCATAGATACTTTCCATTTTTCTGTTAACAAGCATGAGCATGAATATAAACTGTGTGCGCAAGGTTGACATTTGTCGTGTTTCTATGCTTCTGTAACGTTATAAATGCACATGAGTTCGCTGATCCTGGGGCGGCTAATACCAAACGAATTTCAGTCAACGAAGGATATAGGATTTTGGGCATTCTCTAGAAGCATTCACATTTTTAAGCAGGGTTGGTAGCTGGAATTCAAACACAGCAGACAAGCAAGTTACTGTGGCCAACGCATTCCCCGCAAACAAGCGACACAGTGAAAATTCAAAGTAAAAGGCATAACCTGTCACATTCATTACTATTTCTGTAGTATTTTAAATAATAGTGTTACCTATCTTTATGCTCCAATAAGCTAGTAGCTACAGGGTTTAAAAAGCTTTCAACTTTTTCTGTTTAATAGTGGCTATGGAATTCTTAGAACCTGGACTTTTATATGATCAAAAAGTAAATTATATAGTTGTCCTCGACTCTGTAACTAACGACATACTCGGCCTTCAATATATAT

Fln Alignment:

sp_v1.1_unigene8350___MDSDFGVERQTFEAVPDXXXXXXXXXXXXXXLNTMDTIFCDESRYSQKYAGEFGEIATQNAFGGATESIISNVDGAFYADPSFAAKYLRKSSFSPVMAKESSNADGSGGIGVHNVPILANSVQFHTAGVKNGVNTTGWRNLDASHLGSEVSKFSIGSVPSALVQFPSDPGFVEQAPKFSSFNNMDRNSSENVGCGASNLRPVVGAVQQGG-ETMSVFSEPNKRVDDGIGKKRRAKSLTSVDNGKEQEEAKAKRCRLGXXXXXXXXXXXXXXXXXXSKKGKEKNPKVAQKDDNYIHVRARRGQATDSHSLAERVRREKINQRMKFLQDLVPTCNKVTGKAVMLDEIINYVQSLQHQVEFLSMKLATVNPKLDFNIDNFFAKEMSGSFSSKGMSPTYFHLDQLKQASLQTVPSPGSDIPSTMSSVDSAEMFDGTNFQRQEGWDSELQNMYNMG
A9NUN3______________MDPDFGVERQAFEAVPDSKSLVSLHSSLSCSFNTMDTIFCDESRYSQKCTGEFGEIASQNAFGGAPESIISNAGGAFFADPSFAAKYLQKSSFSPVMAKETSNADGSGSIGGPNVPILANSVQFHTPSVKNSVNARRWRNLEASHLGSEVSKFGIGSVPSALVQFPSDPGFVEQAAKFSPFNNIDRNSSENVVCGASNLPPIVGGVQQGGGENMSVFSEPTKCVDDGNGKKRRAKSLTSAENSKEPEEAKAKRCRLGESSEIDDDDNNDETSDSNSKKGKEKNSNVSQKDDNYIHVRARRGQATDSHSLAERVRREKINQRMKFLQDLVPTCNKVTGKAVMLDEIINYVQSLQHQVEFLSMKLATVNPKLDFNIDNFFAKEMSGSFSSKGMSPTYFHLDQLKQASLQTVPSPGSDIPSTMSSVDSAEMFDGTNFQRQEGWDSELQNMYNMG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1760	66		33		0.997452
1924	16		83		0.994512
1972		14		85	0.993533
2119		50		50	1.0
2253	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain