SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8343

Length: 2825 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8343
ATTATCGCAAATAAATGCGACAATAATGGTTTTATTTGGGGCTTCTAAATCTGAAGCAGAGCCTGGCTTGTGTCATCAAGATACCGAGGACAATCAATTCCAAGGAAGCTGGATCGAACCCTGCGAACTGAGTTCTCATTGCCGAACTAAAGCTTCAAAAGAATTAAGTACCTTCACCCAGTGCTAGAATCAGGAAAATTCTGAAACGATCAAAGAAGTATCTTTAACGCAGTGATTTGTCAAGCCCCTTTTTGGAAGGTCAAAATTCAATAATTCTTCAAATTTAACATTCGTTTGCAAAGTAATGGCGTTATTGGTTTCAAATCCTCAACCAGCCATGGCCCCTGGATTTGTCCCTTTGGCAAATGCAGCACAACAGCCTTATGTATCGGAGCTCCTCTCATTTACTCTGGATCGACTGCACAAGGAACCAGAGCTGCTCAGAGTAGATGCAGAGCGCTTGAGAAGGCAAATGCAAGAGGTCGCTGTTGGTAATTATAGAGCATTCATTACTGCAGCTGACGCATTGCAGTCAGTTAGGGAAGAAGTGAGTTCAATTGACAAGCATTTGGAGTCATTGATATCAGAAGTGCCAAAGCTTACTAGTGGATGCAGTGAGTTTATGGACTCAGCTCAGCAAATATTAGAGAAGCGAAGGTTAAACCGTACTCTTCTAGCAAATCATAGTACACTACTTGATTTGCTTGAGATTCCTCAGCTTATGGACACGTGCGTACGAAATGGAAACTATGATGAGGCTCTTGACTTAGAAGCTTTTGTCCTGAAGTTAGCAACCATGCATTCAAAATTGCCTGTGATTCAATCATTGGCAGAAGAAGTTAGGCAAACAACACAATCTATGCTATCACAGCTTCTTCAGAGACTTAGATCAAATATTCAGCTGCCGGAATGTCTTCGAGTGATTGGATACCTTCGTCGTTTAGGAGTATTTAATGAGCATGAGATGCGCTTACAGTTCTTGAAATGCAGAGAAGCATGGCTTGCAGCTATCATTGACGATTTGGACCAAGGGAATGTATATGAGTTCTTAAAACGAATGGCAGATTGCCACAGAGTGCATCTTTTTGATGTTGTTACACAATACCGGGCTATATTTGCTGATGACACGTCTGGGAATGAAGAGAACTATGATGGTGGTCTGCTTTTCAGTTGGGCTATGCACAGGATAACTTCACATTTAAATACACTTCAAACTATGTTACCAAAAACAACTGAAGGTGTATCATTAGCAATTATTCTTGAGCAATGCATGTACTGTGCAATGAGCCTTGGTTGGGTTGGATTAGATTTCCGAGGTCTGCTTCCTTCCCTTTTTGAAGCCTCAGTGCATAATTTATTTGTGCGCAATATGGCTGCTACAGTTGAAAATTTTCAGCTTGTGTTGGATTCACATCGTTGGGTTCCACTTCCCTCTGTTGGACTAGCTAGCAAAGGAAATAATGAAGAGAGCCAGGATGACTTGGCTCCTCCCTACTCTTTGATGGAACATCCACCTCTGGCAATATTTGTGAATGGTGTGTTGGCTGCACTAAATGAATTACGCCATTGTGCTCCAATTAACTTGAAATCAGTGTTAGCATTGGAGCTTATACAAGCTTTGCAGACTGTTTCAGATTATTTGGTGCTGTATAACAAAACACGGATGTTGAGAGACAGTGAGTCAACTCTTTTCCTAGCTATGTGTCGAGCATTCATTGAGATTGCTTGTCCCTACTGCGTACGCTGTTTTAGTCGCTGTTATCCTGGTGGTGTTCAATTAACAGAATTTAATAAAGCTATAGAAGCAGTGTGTAATCTCGTTGGAAGAACTGCTTCGGGTCTTGCTCGAAGGGATAGTGGAGTGAATGGAGCTTTTGGCTCTGATATTCTGCCTTCTAATCGTCGTAGCTTGAATTCAAGCAACCAGGTTTCATCAGGCAACCATGCAGATAGTGCAGCAGTTGTCGAAAATGGAGGTCCAACTAACTTAGACAATGGTCCTCAAATTGCAGAATAGCAAATTTACAAGAACTAGCAATTCTGATCAAGTGCAAGGTGGGAGAAGTCATATGTATGGTGAATATTCAACAGTGCTTTGAAGACAATGATGGACAAATCATGAAACATAAATTTTGCTAGATATGTTTCTTCAATCTTGAAAATCACAAGTCATAAATTTTGTCTTGTACTTGCTTTCTTGAGGCTATTTTTTATATCTCTACTCCTGATTCTATCAAATAAAGGGCTATGCCTTGGCTTGGAAGGGAGTAAAATCGTTATCTGTCTACAGAGGCTATCTTATCGGTGGATGTGCTATTCCAGGTATTCAAGTTCAATCATGTTATGAACCAAAATGCACTTAAGAATTATCTTATCACATCCCAGCTTTCTTTGGATAACTGTTTCCATGTTGACTGGGTTCTGGCCTGCTATTTGGCAATAACTACAGTGCACTAGGAAGATGATTACAACAAACATGTTTCTCTTCCTGATGAAAATATCATATATTGCAATATGGATGTATGAATGGCAGAGTAAGTAAGTTTGTAGGAAGGTTGAAGTCTCAACAAGAATACCAATGTTTACCTATTTGATGCAATTGTTTTCTCCTTTTCATTATCAGCTACCGTGTTCATTTATATGTTGGGAATGCATTGCTTTTCTTCCAGAGAAGTGTCACCATTGCAGGCATGTTAGGTGAAAGGCTTCCAACCTCTTGTATAAATTCAATAGCTTTGCAACTATGAGAGGTGTATTTATGAGGGATCCATTGATGGACACTATACAATGCCACATAGGTTTAGGCTCGCAATCATCATTCATAC

Ace file of the UniGene sp_v1.1_unigene8343

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	COG8; component of oligomeric golgi complex 8	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	77%
Blast2go	protein	-	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7M4E9

Fln msg:

Fln protein: MALLVSNPQPAMAPGFVPLANAAQQPYVSELLSFTLDRLHKEPELLRVDAERLRRQMQEVAVGNYRAFITAADALQSVREEVSSIDKHLESLISEVPKLTSGCSEFMDSAQQILEKRRLNRTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVLKLATMHSKLPVIQSLAEEVRQTTQSMLSQLLQRLRSNIQLPECLRVIGYLRRLGVFNEHEMRLQFLKCREAWLAAIIDDLDQGNVYEFLKRMADCHRVHLFDVVTQYRAIFADDTSGNEENYDGGLLFSWAMHRITSHLNTLQTMLPKTTEGVSLAIILEQCMYCAMSLGWVGLDFRGLLPSLFEASVHNLFVRNMAATVENFQLVLDSHRWVPLPSVGLASKGNNEESQDDLAPPYSLMEHPPLAIFVNGVLAALNELRHCAPINLKSVLALELIQALQTVSDYLVLYNKTRMLRDSESTLFLAMCRAFIEIACPYCVRCFSRCYPGGVQLTEFNKAIEAVCNLVGRTASGLARRDSGVNGAFGSDILPSNRRSLNSSNQVSSGNHADSAAVVENGGPTNLDNGPQIAE*

Protein Length: 572

Fln nts: ATTATCGCAAATAAATGCGACAATAATGGTTTTATTTGGGGCTTCTAAATCTGAAGCAGAGCCTGGCTTGTGTCATCAAGATACCGAGGACAATCAATTCCAAGGAAGCTGGATCGAACCCTGCGAACTGAGTTCTCATTGCCGAACTAAAGCTTCAAAAGAATTAAGTACCTTCACCCAGTGCTAGAATCAGGAAAATTCTGAAACGATCAAAGAAGTATCTTTAACGCAGTGATTTGTCAAGCCCCTTTTTGGAAGGTCAAAATTCAATAATTCTTCAAATTTAACATTCGTTTGCAAAGTA_-_ATGGCGTTATTGGTTTCAAATCCTCAACCAGCCATGGCCCCTGGATTTGTCCCTTTGGCAAATGCAGCACAACAGCCTTATGTATCGGAGCTCCTCTCATTTACTCTGGATCGACTGCACAAGGAACCAGAGCTGCTCAGAGTAGATGCAGAGCGCTTGAGAAGGCAAATGCAAGAGGTCGCTGTTGGTAATTATAGAGCATTCATTACTGCAGCTGACGCATTGCAGTCAGTTAGGGAAGAAGTGAGTTCAATTGACAAGCATTTGGAGTCATTGATATCAGAAGTGCCAAAGCTTACTAGTGGATGCAGTGAGTTTATGGACTCAGCTCAGCAAATATTAGAGAAGCGAAGGTTAAACCGTACTCTTCTAGCAAATCATAGTACACTACTTGATTTGCTTGAGATTCCTCAGCTTATGGACACGTGCGTACGAAATGGAAACTATGATGAGGCTCTTGACTTAGAAGCTTTTGTCCTGAAGTTAGCAACCATGCATTCAAAATTGCCTGTGATTCAATCATTGGCAGAAGAAGTTAGGCAAACAACACAATCTATGCTATCACAGCTTCTTCAGAGACTTAGATCAAATATTCAGCTGCCGGAATGTCTTCGAGTGATTGGATACCTTCGTCGTTTAGGAGTATTTAATGAGCATGAGATGCGCTTACAGTTCTTGAAATGCAGAGAAGCATGGCTTGCAGCTATCATTGACGATTTGGACCAAGGGAATGTATATGAGTTCTTAAAACGAATGGCAGATTGCCACAGAGTGCATCTTTTTGATGTTGTTACACAATACCGGGCTATATTTGCTGATGACACGTCTGGGAATGAAGAGAACTATGATGGTGGTCTGCTTTTCAGTTGGGCTATGCACAGGATAACTTCACATTTAAATACACTTCAAACTATGTTACCAAAAACAACTGAAGGTGTATCATTAGCAATTATTCTTGAGCAATGCATGTACTGTGCAATGAGCCTTGGTTGGGTTGGATTAGATTTCCGAGGTCTGCTTCCTTCCCTTTTTGAAGCCTCAGTGCATAATTTATTTGTGCGCAATATGGCTGCTACAGTTGAAAATTTTCAGCTTGTGTTGGATTCACATCGTTGGGTTCCACTTCCCTCTGTTGGACTAGCTAGCAAAGGAAATAATGAAGAGAGCCAGGATGACTTGGCTCCTCCCTACTCTTTGATGGAACATCCACCTCTGGCAATATTTGTGAATGGTGTGTTGGCTGCACTAAATGAATTACGCCATTGTGCTCCAATTAACTTGAAATCAGTGTTAGCATTGGAGCTTATACAAGCTTTGCAGACTGTTTCAGATTATTTGGTGCTGTATAACAAAACACGGATGTTGAGAGACAGTGAGTCAACTCTTTTCCTAGCTATGTGTCGAGCATTCATTGAGATTGCTTGTCCCTACTGCGTACGCTGTTTTAGTCGCTGTTATCCTGGTGGTGTTCAATTAACAGAATTTAATAAAGCTATAGAAGCAGTGTGTAATCTCGTTGGAAGAACTGCTTCGGGTCTTGCTCGAAGGGATAGTGGAGTGAATGGAGCTTTTGGCTCTGATATTCTGCCTTCTAATCGTCGTAGCTTGAATTCAAGCAACCAGGTTTCATCAGGCAACCATGCAGATAGTGCAGCAGTTGTCGAAAATGGAGGTCCAACTAACTTAGACAATGGTCCTCAAATTGCAGAATAG___CAAATTTACAAGAACTAGCAATTCTGATCAAGTGCAAGGTGGGAGAAGTCATATGTATGGTGAATATTCAACAGTGCTTTGAAGACAATGATGGACAAATCATGAAACATAAATTTTGCTAGATATGTTTCTTCAATCTTGAAAATCACAAGTCATAAATTTTGTCTTGTACTTGCTTTCTTGAGGCTATTTTTTATATCTCTACTCCTGATTCTATCAAATAAAGGGCTATGCCTTGGCTTGGAAGGGAGTAAAATCGTTATCTGTCTACAGAGGCTATCTTATCGGTGGATGTGCTATTCCAGGTATTCAAGTTCAATCATGTTATGAACCAAAATGCACTTAAGAATTATCTTATCACATCCCAGCTTTCTTTGGATAACTGTTTCCATGTTGACTGGGTTCTGGCCTGCTATTTGGCAATAACTACAGTGCACTAGGAAGATGATTACAACAAACATGTTTCTCTTCCTGATGAAAATATCATATATTGCAATATGGATGTATGAATGGCAGAGTAAGTAAGTTTGTAGGAAGGTTGAAGTCTCAACAAGAATACCAATGTTTACCTATTTGATGCAATTGTTTTCTCCTTTTCATTATCAGCTACCGTGTTCATTTATATGTTGGGAATGCATTGCTTTTCTTCCAGAGAAGTGTCACCATTGCAGGCATGTTAGGTGAAAGGCTTCCAACCTCTTGTATAAATTCAATAGCTTTGCAACTATGAGAGGTGTATTTATGAGGGATCCATTGATGGACACTATACAATGCCACATAGGTTTAGGCTCGCAATCATCATTCATAC

Fln Alignment:

sp_v1.1_unigene8343___PAMAPGFVPLANAAQQPYVSELLSFTLDRLHKEPELLRVDAERLRRQMQEVAVGNYRAFITAADALQSVREEVSSIDKHLESLISEVPKLTSGCSEFMDSAQQILEKRRLNRTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVLKLATMHSKLPVIQSLAEEVXXXXXXXXXXXXXXXXXNIQLPECLRVIGYLRRLGVFNEHEMRLQFLKCREAWLAAIIDDLDQGNVYEFLKRMADCHRVHLFDVVTQYRAIFADDTSGNEENYDGGLLFSWAMHRITSHLNTLQTMLPKTTEGVSLAIILEQCMYCAMSLGWVGLDFRGLLPSLFEASVHNLFVRNMAATVENFQLVLDSHRWVPLPSVGLASKGNNEESQDDLAPPYSLMEHPPLAIFVNGVLAALNELRHCAPINLKSVLALELIQALQTVSDYLVLYNKTRMLRDSESTLFLAMCRAFIEIACPYCVRCFSRCYPGGVQL
D7M4E9______________PEATASLLSLASATQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFITAADALLAIRQEVSSIDKHLESLIGEVPKLTSGCTEFIDSAENILEKRKMNQSLLANHSTLLDLLEIPQLMDTCVRNGNFDEALDLEAFVSKLATMHPKLPVIQALAAEVRQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFGEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITSHLKTLKIMLPKITEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMSTAVENFQLVLDSHRWVPLPSVGFPSSGINEDSKDDVTPPSYLMEHPPLAVFINGVSAALNELRPCAPLSLKNVVAHELIKGLQAVSDSLLRYNTTRMLRLSESNLFLSLCRAFVEVVFPHCATCFGRCYPGGATI

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
794	25			75	0.996473
796	75		25		0.996473
798		75	25		0.996473
1321	80			20	0.995493
1322		20	80		0.995493
1325		80	20		0.995493
1326	20			80	0.995493
1327		20	80		0.995493
1331		80	20		0.995493
2161	10	90			0.90298
2169	10			90	0.90298
2172		90		10	0.90298
2174	75	16		8	0.99999
2178	75		25		1.0
2181	83	16			0.999991
2182	83	16			0.999991
2185			16	83	0.999991
2191		18		81	0.999994
2603	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain