SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8338

Length: 2594 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8338
TTATTCCGTTGCGTCGTGACCTTGGCTGTCACTCAAGGATTTGTGTTGCAATTTGCAGTGTTTCAGGGTTCCCCTTTCTTCTAGGATCACAATATTTCTGTTTGAAGCTGGTGAATTGGGCCAGTTTTCAATTTATTGAAGAGAGTGGTTTCCTTTCCAGTTTCCAGCAGTTTTACCTATTGGATTCATTCAATTACAGGAAATAATGGAAAGAAAAGCCGTGTCAGATGAGAAGGAAATGGTCGAGAGGCGTATTGAACGCCTCTGCTCTCACTTGGGCGCCCAATCCACAACAGAAGAGTACCAGTTAGCCATGGCTTCCTGTGCCAAGGTGATGGTGAAGTTTCCGGTGAGCTCTGTTGTCCTGGCTGATTACATGAAGGGTACACACAGGAGTTTTCAGGAGAAGATTCTTCAGTATTTTCGTGACCGCCCGGAATTACAAACCCCGATTGAAATTTCGAAGGATGAACATCGAGAACTGACGATGAGACAGCTTCAGGGGCTTGTGAGAGAGGCCGGGATCCGACCCCTTAAGGCTCTGCTGGAGGACCCATCTCAGTACTTTGCAATTACGGAGGCCGCGGGCACTATCGATCTCTCCCTTGCTATAAAATTGGGGGTCCAATTCAGCCGGTGGGGGGGAGCTGTGATGAATTTGGGAACCCAGAAGCACCGGGATAAATACTATGCTGGAATCGACAATCTAGATTATCTAGGTTGTTTTGCAATGACAGAATTACACCATGGTTCAAATGTTCAAGGTATTCAGACAATTGCAAGATTTGATCCCCAGACAGATGAATTTATCATCGACACACCGAATGAGGGAGCCACTAAATGGTGGATTGGCAATGCAGCAGTACATGGCAAGTTTGCTGCAGTGTTTTCTAGGCTAATCTTGCCAGGTAATGAAGTTGATGAGGTTCTTGATATGGGAGTCCATGCTTTCATTGTACCGATCAGGGACTTGGATTCTCACAAACCTCTCCCAGGGGTTGAAATCCGAGATTGTGGCTACAAAGTTGGCCTGAATGGAGTGGACAATGGAGCTTTGAAATTCCATTCAGTGAGAATCCCTCGAGAAAATTTGCTCAATAGATTTGGGGATGTATCCAGGGATGGACAATACACTAGCAACCTCCCAACAATAAATAAAAGATTTGCTGCAACACTTGGGGAGCTTGTTGGGGGAAGAGTGGGACTTGCCCATGGATCTGTTGGAGTCCTGAAAACTGCTGTTACAATAGCTGTACGTTACTCACTGCTTCGACAGCAGTTTGGTCCTCCCAAACAACCAGAGATTAGCATTTTAGATTACCAGTCTCAACAACACAAACTCATGCCTATGCTGGCCTCTACATATGCTTTTCATTTTGCAACGGTTTACTTGGTAGAAAAATACTCTGAGATGAAAAAATCACAAGATGAAAAGGTTATTGCAGACGTCCATGCGCTCTCAGCTGGGCTAAAAGCCTACGTGACTTCCTACACAGCAAAATCCCTAAGTGTCTGCAGAGAAGCTTGTGGAGGGCATGGCTATGCTGCTGTTAACAGATTTGGAGCTTTGCGTAATGACCATGATATTTTCCAGACCTTTGAAGGGGACAACACCGTTCTGCTACAGCAGGTTTCTGCTGATCTATTGAAACAATACAAAGAAAAATTTCGAGGAGGGACATTTAATGTTACCTGGAATTACTTGAGAGACATGATGACCACATATCTCTCAGAAGCAAATCCAGTAATTGCTCGCCGTGAAGGACAGGATCATTTGCGAGACCCCAAATTTCAGCTCGATGCATTTAGGTATCGGACATCAAGATTGCTGCATACTGCTGCATTGCGTCTAAGGAAGCACTCAAAGTCACTTGGCAGTTTTGAGGCATGGAATAGATGCTTGAATCATTTACTAATACTTGCTGAATCACATATAGAGTCTGTGATCCTTGCAAGATTTATAGAGGCTGTCAATAGCTGTAAAGACAGGAATGCTCGTGCAGTCTTAAAGCTTCTCTGTGATCTTTATGCACTTGATCGAATTTGGAAAGACATTGGAAGCTATAGAAATGTAGACTATGTTGCACCCAACAAGGCTAAGGCAATTCTTCGGCTCAGCGAATACCTCTGTTTTGAAGTGAGGAGTGTGGCAAGAGAACTTGTTGATGCATTTGGTATTCCTGATTTTGCATTACGTGCACCAATAGGTATGCAGTCTGGACAGTATGCTGAGTATACACAATTTGTCGGCTTCTAATACATCCATTGAGACTGAATCAGAGGCCTAACCATACGGATATTTTAAACTCACTATTTGACAATTGATGATTTTAAATGAGAAAAGCAGAGAAAAATATGCATTACATATTTCTGAATATCATTTGGAGAGGTCAGAAGAAGCTTGGAACCCATCAATTGAATTAGATGGGAATTTCATAAAAATTTCCTTGCTCTCTATAGAAGCTATTGCAAGTAGACATAGCAGGATGTAAGGATAGATATATCGTGCACCTTGTGTCTGGGTTGTATGATAAAGACGAATATTGGATATAATGGTTGTTTGAATTAATTGAAAGATGTGGTACCAAGGTTCG

Ace file of the UniGene sp_v1.1_unigene8338

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acyl-CoA oxidase (EC:1.3.3.6); K00232 acyl-CoA oxidase [EC:1.3.3.6]	-	-	72%
FL-Next	sp=Acyl-coenzyme A oxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acyl-CoA oxidase.	EC:1.3.3.6	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid metabolism	00071	84%
Blast2go	alpha-Linolenic acid metabolism	00592	84%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	Acyl-CoA oxidase.	EC:1.3.3.6	-	0.0	72%

Source	KEGGs	Term	Identity
AutoFact	Fatty acid metabolism	00071	72%
AutoFact	alpha-Linolenic acid metabolism	00592	72%
AutoFact	Biosynthesis of unsaturated fatty acids	01040	72%
AutoFact	Biosynthesis of plant hormones	01070	72%
AutoFact	Metabolic pathways	01100	72%

Source	GOs	Term	Type	Identity
Blast2go	long-chain fatty acid metabolic process	GO:0001676	Biological Process	84%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	84%
Blast2go	acyl-CoA oxidase activity	GO:0003997	Molecular Function	84%

Source	InterPros	Term	Type	Identity
Blast2go	Acyl-CoA oxidase, C-terminal	IPR002655	-	84%
Blast2go	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	84%
Blast2go	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	84%
Blast2go	Acyl-CoA dehydrogenase/oxidase C-terminal	IPR009075	-	84%
Blast2go	Acyl-CoA dehydrogenase/oxidase	IPR009100	-	84%
Blast2go	Acyl-CoA oxidase	IPR012258	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTG5

Fln msg:

Fln protein: MERKAVSDEKEMVERRIERLCSHLGAQSTTEEYQLAMASCAKVMVKFPVSSVVLADYMKGTHRSFQEKILQYFRDRPELQTPIEISKDEHRELTMRQLQGLVREAGIRPLKALLEDPSQYFAITEAAGTIDLSLAIKLGVQFSRWGGAVMNLGTQKHRDKYYAGIDNLDYLGCFAMTELHHGSNVQGIQTIARFDPQTDEFIIDTPNEGATKWWIGNAAVHGKFAAVFSRLILPGNEVDEVLDMGVHAFIVPIRDLDSHKPLPGVEIRDCGYKVGLNGVDNGALKFHSVRIPRENLLNRFGDVSRDGQYTSNLPTINKRFAATLGELVGGRVGLAHGSVGVLKTAVTIAVRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFHFATVYLVEKYSEMKKSQDEKVIADVHALSAGLKAYVTSYTAKSLSVCREACGGHGYAAVNRFGALRNDHDIFQTFEGDNTVLLQQVSADLLKQYKEKFRGGTFNVTWNYLRDMMTTYLSEANPVIARREGQDHLRDPKFQLDAFRYRTSRLLHTAALRLRKHSKSLGSFEAWNRCLNHLLILAESHIESVILARFIEAVNSCKDRNARAVLKLLCDLYALDRIWKDIGSYRNVDYVAPNKAKAILRLSEYLCFEVRSVARELVDAFGIPDFALRAPIGMQSGQYAEYTQFVGF*

Protein Length: 685

Fln nts: TTATTCCGTTGCGTCGTGACCTTGGCTGTCACTCAAGGATTTGTGTTGCAATTTGCAGTGTTTCAGGGTTCCCCTTTCTTCTAGGATCACAATATTTCTGTTTGAAGCTGGTGAATTGGGCCAGTTTTCAATTTATTGAAGAGAGTGGTTTCCTTTCCAGTTTCCAGCAGTTTTACCTATTGGATTCATTCAATTACAGGAAATA_-_ATGGAAAGAAAAGCCGTGTCAGATGAGAAGGAAATGGTCGAGAGGCGTATTGAACGCCTCTGCTCTCACTTGGGCGCCCAATCCACAACAGAAGAGTACCAGTTAGCCATGGCTTCCTGTGCCAAGGTGATGGTGAAGTTTCCGGTGAGCTCTGTTGTCCTGGCTGATTACATGAAGGGTACACACAGGAGTTTTCAGGAGAAGATTCTTCAGTATTTTCGTGACCGCCCGGAATTACAAACCCCGATTGAAATTTCGAAGGATGAACATCGAGAACTGACGATGAGACAGCTTCAGGGGCTTGTGAGAGAGGCCGGGATCCGACCCCTTAAGGCTCTGCTGGAGGACCCATCTCAGTACTTTGCAATTACGGAGGCCGCGGGCACTATCGATCTCTCCCTTGCTATAAAATTGGGGGTCCAATTCAGCCGGTGGGGGGGAGCTGTGATGAATTTGGGAACCCAGAAGCACCGGGATAAATACTATGCTGGAATCGACAATCTAGATTATCTAGGTTGTTTTGCAATGACAGAATTACACCATGGTTCAAATGTTCAAGGTATTCAGACAATTGCAAGATTTGATCCCCAGACAGATGAATTTATCATCGACACACCGAATGAGGGAGCCACTAAATGGTGGATTGGCAATGCAGCAGTACATGGCAAGTTTGCTGCAGTGTTTTCTAGGCTAATCTTGCCAGGTAATGAAGTTGATGAGGTTCTTGATATGGGAGTCCATGCTTTCATTGTACCGATCAGGGACTTGGATTCTCACAAACCTCTCCCAGGGGTTGAAATCCGAGATTGTGGCTACAAAGTTGGCCTGAATGGAGTGGACAATGGAGCTTTGAAATTCCATTCAGTGAGAATCCCTCGAGAAAATTTGCTCAATAGATTTGGGGATGTATCCAGGGATGGACAATACACTAGCAACCTCCCAACAATAAATAAAAGATTTGCTGCAACACTTGGGGAGCTTGTTGGGGGAAGAGTGGGACTTGCCCATGGATCTGTTGGAGTCCTGAAAACTGCTGTTACAATAGCTGTACGTTACTCACTGCTTCGACAGCAGTTTGGTCCTCCCAAACAACCAGAGATTAGCATTTTAGATTACCAGTCTCAACAACACAAACTCATGCCTATGCTGGCCTCTACATATGCTTTTCATTTTGCAACGGTTTACTTGGTAGAAAAATACTCTGAGATGAAAAAATCACAAGATGAAAAGGTTATTGCAGACGTCCATGCGCTCTCAGCTGGGCTAAAAGCCTACGTGACTTCCTACACAGCAAAATCCCTAAGTGTCTGCAGAGAAGCTTGTGGAGGGCATGGCTATGCTGCTGTTAACAGATTTGGAGCTTTGCGTAATGACCATGATATTTTCCAGACCTTTGAAGGGGACAACACCGTTCTGCTACAGCAGGTTTCTGCTGATCTATTGAAACAATACAAAGAAAAATTTCGAGGAGGGACATTTAATGTTACCTGGAATTACTTGAGAGACATGATGACCACATATCTCTCAGAAGCAAATCCAGTAATTGCTCGCCGTGAAGGACAGGATCATTTGCGAGACCCCAAATTTCAGCTCGATGCATTTAGGTATCGGACATCAAGATTGCTGCATACTGCTGCATTGCGTCTAAGGAAGCACTCAAAGTCACTTGGCAGTTTTGAGGCATGGAATAGATGCTTGAATCATTTACTAATACTTGCTGAATCACATATAGAGTCTGTGATCCTTGCAAGATTTATAGAGGCTGTCAATAGCTGTAAAGACAGGAATGCTCGTGCAGTCTTAAAGCTTCTCTGTGATCTTTATGCACTTGATCGAATTTGGAAAGACATTGGAAGCTATAGAAATGTAGACTATGTTGCACCCAACAAGGCTAAGGCAATTCTTCGGCTCAGCGAATACCTCTGTTTTGAAGTGAGGAGTGTGGCAAGAGAACTTGTTGATGCATTTGGTATTCCTGATTTTGCATTACGTGCACCAATAGGTATGCAGTCTGGACAGTATGCTGAGTATACACAATTTGTCGGCTTCTAA___TACATCCATTGAGACTGAATCAGAGGCCTAACCATACGGATATTTTAAACTCACTATTTGACAATTGATGATTTTAAATGAGAAAAGCAGAGAAAAATATGCATTACATATTTCTGAATATCATTTGGAGAGGTCAGAAGAAGCTTGGAACCCATCAATTGAATTAGATGGGAATTTCATAAAAATTTCCTTGCTCTCTATAGAAGCTATTGCAAGTAGACATAGCAGGATGTAAGGATAGATATATCGTGCACCTTGTGTCTGGGTTGTATGATAAAGACGAATATTGGATATAATGGTTGTTTGAATTAATTGAAAGATGTGGTACCAAGGTTCG

Fln Alignment:

sp_v1.1_unigene8338___PELQTPIEISKDEHRELTMRQLQGLVREAGIRP--LKALLEDPSQYFAITEAAGTIDLSLAIKLGVQFSRWGGAVMNLGTQKHRDKYYAGIDNLDYLGCFAMTELHHGSNVQGIQTIARFDPQTDEFIIDTPNEGATKWWIGNAAVHGKFAAVFSRLILPGNEVDEVLDMGVHAFIVPIRDLDSHKPLPGVEIRDCGYKVGLNGVDNGALKFHSVRIPRENLLNRFGDVSRDGQYTSNLPTINKRFAATLGELVGGRVGLAHGSVGVLKTAVTIAVRYSLLRQQFG-PPKQPEISILDYQSQQHKLMPMLASTYAFHFATVYLVEKYSEMKKSQDEKVIADVHALSAGLKAYVTSYTAKSLSVCREACGGHGYAAVNRFGALRNDHDIFQTFEGDNTVLLQQVSADLLKQYKEKFRGGTFNVTWNYLRDMMTTYLSEANPVIARREGQDHLRDPKFQLDAFRYRTSRLLHTAALRLRKHSKSLGSFEAWNRCLNHLLI--LAESHIESVILARFIEAVNSCKDRNARAVLKLLCDLYALDRIWKDIGSYRNVDYVAPNKAKAILRLSEYLCFEVRSVARELVDAFGIP
C0PTG5______________PDYNKPME----HQREMTMKRILYLLDKGVFKGWLTKPSLEMEARSSTLHECLGLYDHSLGVKLGVHYNLWGGAIKFLGTKGHREKWLQDTEDFVIRGSFAMTELGHGSNVRGIETITTYDPSTQEFVITTPCESAQKYWIGGAANHATHTVVFSQLIINGK------NEGVHAFVAQIRD-KYGKICSGVRIADCGHKIGLNGVDNGRIWFDKVRVPREYLLNSVADVSPDGKYHSQIDDPDQRFAAFMAPLTSGRVTIAVTSLYQCKIGLAIAIRYSLTRRAFHLYPNEPEVLLLDYPAHQRRLLPLLAKTYAMCCAVNDLKRIYWKRTPS-DSKTI---HVLSSGYKAMFTWHDMKTLQECREACGGQGLKTENRIGHLKGEYDVQSTFEGDNNVLMQQVSKALFSEYSAARK------KQKPLRGLGLEHMNNNRPIIPAILDSSTLRNIEFQMDIFHLRERDLLERLAAEI-SQCVSQGTTTAVAFTMSYELAEDLGRAFSERAVLDSFILAETKLAAGSMKDILGLLRTIYALITLEEDI-SFLRYGYLSPQQSQMGRKEIAKLCNELRPHALSLVDSFGIP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1725	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain