SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8326

Length: 1496 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8326

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	exostosin family protein [Arabidopsis thaliana] emb\|CAA22163.1\| putative protein [Arabidopsis thaliana] emb\|CAB79213.1\| putative protein [Arabidopsis thaliana] gb\|AAR92278.1\| At4g22580 [Arabidopsis thaliana] gb\|AAS99682.1\| At4g22580 [Arabidopsis thaliana]	-	-	50%
FL-Next	sp=Xyloglucan galactosyltransferase KATAMARI1 homolog; Oryza sativa subsp. japonica (Rice).	-	-	38%
Blast2go	galactosyltransferase-like protein	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exostosin-like	IPR004263	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q8H038

Fln msg: Distance to subject end: 240 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 313 - 588

Fln protein: MKKSQERSCRCIVLPLLLLSALALLSVHVGFPSAFPDQKKKTHDGVSDSNDGIYDHVVDVAALTRSEKLEIGEEGLLSDSAEFRFNSSSYLAAECEGRRVYMHELPPEFNSGILSQCDAYEAYWLNFCDFAKNWGFGLKTHRRSKSWYRTEAYMLEIIFHERMKRYPCLAASAEEADAFYIPYYSGLDSLRFLFGNDVNRSHEHGVQLVEWLQANAGELWARNGGADHFVVMARTAWDFSRALHRREGWGTSLLELPGLLNVTSLVLESRAFPWQEQAIPYPTSFHPAGGVNLHMWMSRVRRSRRTFLFSFAG

Protein Length: 314

Fln nts: GAACTGTGTCACCATTTTCCTTCGACTGTGGCCCGGAAAATTGGGATTCTTTCAGGTCTATAATCGACTTGCCGTGAGAAACTCCAACTCCGTTGCCATGCGGACTCCTGACGCGTATCGGAAATTCGCAGGATCGTCTTATCGGGAAGCGAGTGTGAACGCGATGTGCGCTGGGAATACAACATGGCAACTACCACCGATCTAGTGATCGAAACCATTAGTTGTCCTATAAATCTGAGGGCCGCAAGAGACAAATGTACGTCGTGCCCTTGGCTGTCATCCAATCTGACTGTGTATTTCATGGCATAAACAATATTACCGTGTATATATCAGTACGTCCAGATTCTTCGAAGAGACCCCGTCAGTAAAAGCACAGAGAACGCCGGCGGACGGCTGAATGCGGGTCCCCAGCGACTTTAATATGTCGAATTCCGCGTTTTTGTCACCCAGACCTGTTCATTGCAATCTCAGTGGATTCATGGCGGTAATTGAAAAAAATATATATTCATGAAATGAAGCCGTAGCTGGAGCTTCAGGAACCGGAATTGGGATCACA_-_ATGAAAAAATCGCAGGAGAGAAGTTGCAGGTGCATTGTGTTGCCCCTGCTGTTGCTCTCGGCTCTTGCCCTGCTGAGCGTTCATGTCGGGTTTCCCTCTGCATTTCCAGATCAAAAGAAGAAAACCCACGATGGGGTTTCTGATTCAAATGACGGGATTTACGATCATGTGGTAGATGTTGCGGCACTTACCCGATCTGAGAAACTGGAGATCGGGGAGGAGGGACTGCTGTCGGATTCTGCTGAATTCAGATTCAATTCGTCCTCGTATCTGGCGGCCGAATGCGAGGGGAGAAGAGTGTATATGCACGAGCTGCCGCCGGAATTCAACAGTGGGATTTTATCCCAATGTGATGCTTATGAGGCATACTGGCTTAATTTCTGCGACTTTGCCAAGAATTGGGGATTCGGCCTGAAAACGCACCGGCGATCCAAGAGCTGGTACCGGACCGAAGCCTACATGTTGGAGATTATTTTTCATGAAAGAATGAAGCGGTACCCCTGCCTGGCAGCTTCGGCAGAGGAGGCCGATGCGTTTTATATTCCCTATTATAGCGGTCTGGATTCGCTGAGATTTCTATTTGGGAACGATGTGAACCGGAGCCACGAGCACGGCGTGCAGTTGGTTGAATGGCTCCAGGCGAATGCGGGCGAATTGTGGGCACGAAATGGCGGGGCAGATCATTTTGTAGTCATGGCACGCACAGCCTGGGATTTCTCTCGGGCGCTGCATAGGCGTGAGGGCTGGGGAACGAGTCTGCTCGAGCTGCCTGGGTTGCTGAATGTGACTTCTCTGGTTTTGGAGAGCCGAGCGTTTCCATGGCAGGAGCAGGCGATACCTTACCCGACTTCGTTTCACCCGGCGGGTGGGGTCAATCTCCATATGTGGATGAGCCGGGTCCGACGGTCTCGTCGGACGTTTCTGTTTTCCTTTGCAGGGG

Fln Alignment:

sp_v1.1_unigene8326___CEGRRVYMHELPPEFNSGILSQCDAYEAYWLNFCDFAKNWGFGLKTHRR-----SKSWYRTEAYMLEIIFHERMKRYPCLAASAEEADAFYIPYYSGLDSLRFLFGNDVNRSHEHGVQLVEWLQANAGELWARNGGADHFVVMARTAWDFSRALHRREGWGTSLLELPGLLNVTSLVLESRAFPWQEQAIPYPTSFHPAGGVNLHMWMSRVRRSRRTFLFSFAG
Q8H038______________CGGRYIYVHELPPRFNDDMLRECERL-SLWTNMCKFMSNEGLGPPLGNEEGVFSNTGWYATNQFMVDVIFRNRMKQYECLTKDSSIAAAVFVPFYAGFDVARYLWGHNISTRDAASLDLIDWLRKRPE--WNVMGGRDHFLVGGRIAWDFRRLTDEESDWGNKLLFMPAAKNMSMLVVESSPWNANDFAIPYPTYFHPAKDADVLLWQDRMRSLERPWLFSFAG

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
262		75	25		0.996473
267	25		75		0.996473
270	40	60			1.0
271	40	60			1.0
274			40	60	1.0
275		40	60		1.0
276	40		60		1.0
280			40	60	1.0
284			40	60	1.0
286	60	40			1.0
294		80	20		0.995493
299	20			80	0.995493
310	80	20			0.995493
451		20		80	0.995493
452		80		20	0.995493
556			25	75	0.996473
717		25	75		0.996473
1340		46		53	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain