SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8287

Length: 3282 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8287
GTGTGAGATAAGCATCCATTAAAACGTTACTGCTTCAAGTGGGGTTTGAGACGATAATGATCCCCAATCGGTTAAGTCCATGATTTTAGGTTTAACAAAATCTGATGAAGATTACCGAGACTGAAGCGCCACACTGAAAACCTTCCACAATGCCAAATAAAACGAATTTTTGAAGATGCCTCGTCCATTTTTGGAAAAGTCGTCTAGCCTCAGAACTCTTAGTGTGCCATAAACCATTTAATATAACGCTGGCAGCCTAAAGTCCTAAACCCATTCAATCTCAGGAAAAAGCCTCAGAACTCCTGGTGTGCCATAAAGACTAAAATATATCCATGGCGGCCTAATGTCCTAAACCCATTTAATCTCGTGACCTTGGCCATGTCACATTTTGCTCTAGCCTCGTTACTCCTAGTGTGCCATAAACCATTTAATATATCGTTCGTGACCTATGGCTGTCACTCAATTCAATCTCAGGAAAAAGCAGTTGTCACATTTTGCTCTCTCCCAACTCTGATCCATTTCAAATTACCTCCGAACCTCTGAAATCTCTGTACATTTTAGCAGATGGCCATGTATACATCCTCCTTTGGAAGCCAACTTGATTTGGGATCGCCTCTGCATTGTTATGGCCGACGAGATATACTCCTCGCCAGACTGAGTCCCAGTCCTAATAGAACTACATGGAACCGTCAACACAGTTTCATCTGCTCTGCTGCTTCTTCGTCTTCATCTGTTGCTCAACCGGAGGCGCCTCCAGCAACTGTGGAGGATGGGGGTCCGAGTCGCAAGCTGAACAAATACAGCAGCAGAGTGACCCAACCCAAGTCCCAGGGGGGATCGCAGGCTGTCCTCTATGGTGTGGGGCTGTCTGAAGAAGACATGAGCAAGCCCCAGGTGGGTATATCTTCCGTTTGGTATGAGGGGAATACATGCAATATGCATTTGCTCCAGCTGGCGGAGGCCGTCAAAGAGGGCGTTACAGAAGCAGGCATGGTGGGCTTCCGTTTCAACACTGTGGGTGTGAGCGATGCCATCTCGATGGGCACCAGAGGCATGAGCTACAGCTTGCAGTCCAGAGACCTCATTGCTGATAGCATTGAGACCGTCATGGGCGCACAGTGGTACGATGCCAATATCTCCCTACCTGGTTGTGACAAAAATATGCCTGGTACCCTTATGGCAATGGGACGCCTCAATCGACCTAGCATTATGGTTTATGGTGGGACCATTAAGCCTGGGCATTTCCAAGGTCACACCTACGACATAATATCAGCCTTTCAGTGCTATGGGGAATATGTCAATGGGTCAATCACTGATGAGCAGCGGATGGATGTGGTGCGCAATTCTTGTCCTGGTGCAGGAGCATGTGGTGGCATGTATACAGCCAATACCATGGCAAGTGCAATTGAGACCATGGGCATGACAATTCCTTACAGTTCTTCAACACCAGCAGAGGACCCATTGAAGCTGGATGAATGTCGTTTGGCAGGCAAATATCTTTTGGAACTGATAAAACTGGATTTGAAACCAAGGGATATCATCACCATGAAATCCCTACGAAATGCAATGGTGATTACAATGGCTCTTGGTGGCTCCACCAATGCCGTCTTGCATTTGATTGCCATTGCCAGATCAGTCGGTTTAGATCTGACACTGGACGATTTTCAGAAAATCAGTGATGAGGTACCTTTTCTTGCAGATCTCAAGCCCAGTGGGAAATATGTAATGGAAGACCTTCATAAGGTTGGAGGAACACCGGCAGTAATTCAATATCTATTAGAGTTAGGACTCATAGATGGTGATTGTATAACAGTTACAGGAAAGACACTTGGAGAAAATGTAAAGAATTGCCCCCCTTTAACAGAGGGTCAGAAAATAATAAGGCCATTCAAAAATCCAATTAAATCAACTGGACACATTCAGATATTGTATGGCAACTTAGCACCGGAGGGTTCTGTTGCGAAGATTACAGGGAAGGAAGGCCTGTATTTTTCAGGTCCTGCTCTTGTGTTCGAAGGAGAAGAGTCCATGTTAGCAGCTATTTCAGAAAATCCACAAAGCTTCAAGGGTTCAGTTGTTGTTATAAGGGGAGAGGGCCCAAAGGGTGGGCCTGGAATGCCAGAGATGCTAACTCCTACTAGTGCCATTATGGGTGCCGGTCTTGGCAAGGAAGTTGCTTTGTTAACGGATGGAAGGTTTTCTGGTGGTTCACATGGATTTGTTGTTGGTCATGTATGCCCTGAGGCACAGGTTGGAGGCCCTATTGCTTTGATCCAAAATGGAGATACAATCACTATTGATGTGAGTAAAAGGAGAATAGATGTGGCCTTAACGGAAAATGAATTTGCCGAGAGGCGGGCAAAGTGGTCTCCTCCACCATACAGAGTTAATAAAGGAACATTGTTCAAGTATATCAAGAATGTAAAATCGGCCTCTGAGGGCTGTGTGACGGACGAATAAAATGTTAAGTGATTTAAATGTCCAACAAGTTTCAGGTATTAAGGTGTGTCTCATGCAGAATGAACTTCTATTTTTATGGCTAAATTTTCTCCACTTAAGTTGTTCTGGAGGTGTCATTATTGTTAAGACATTTATTGAGCGATACAGTGCTTAAGGGGAATTTTCTAAGTATCTAATTCAACTTGAGTTCTTATAATGCAACCCAGAAGTTGCTGAGCTTTTCTTGTCAAGGGTAATGTCTGTCCTTATCAATTTTGAAATCCATGTATATCCTAATTACTTCATAGAGCAAGAGCAATACGAACCACTTTCTAGTAGATCATCAAATAGTGAACTCTATAATGCTATTTATTTTGCAGTATTTGGAAGACAAATTTTAACATGTGAGGAAAATGAACCAATACCCATTATTTTCCCTTTTTATTCCATCTTTTATTCTTTTTAAGCTTTGGAAGATTCATATACAGATTCATATAATGCATAAGAAACATATTGATGCATCTGTAAATCGGATAAGTTTATGAGTAGATTCTACCAATTGGAGCTGGATGATGATTCAGGCTTTTGAGGAAATTCTGTTTCCTAGCCCCGTTGAGCAGGTGGGGAAGACAGAAGCTTTTCCATGCGAAAACACAGGCAGCTATTAGATCTCACTTTGAACATTTCAGGCAATTGCTGAGTTATGGCATTTCCTCTGGCAGGATTTATGCCAGGGCGATATCTATATCTAAGAGTATGTTGATTCAATCAATATTGCTATTAATTAATTAAGGTTCACCTCAGCTGATATGATTAGTTGAGCAACCATATTGACCTAAAGTT

Ace file of the UniGene sp_v1.1_unigene8287

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dihydroxy-acid dehydratase, putative (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	84%
Blast2go	protein	-	-	90%

Source	ECs	Term	Type	e value	Identity
AutoFact	Dihydroxy-acid dehydratase.	EC:4.2.1.9	-	0.0	79%

Source	KEGGs	Term	Identity
AutoFact	Valine, leucine and isoleucine biosynthesis	00290	79%
AutoFact	Pantothenate and CoA biosynthesis	00770	79%
AutoFact	Biosynthesis of alkaloids derived from histidine and purine	01065	79%
AutoFact	Metabolic pathways	01100	79%
AutoFact	Biosynthesis of secondary metabolites	01110	79%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	90%
Blast2go	copper ion binding	GO:0005507	Molecular Function	90%
Blast2go	catalytic activity	GO:0003824	Molecular Function	90%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Dihydroxy-acid/6-phosphogluconate dehydratase	IPR000581	-	90%
Blast2go	Dihydroxy-acid dehydratase	IPR004404	-	90%
Blast2go	Aconitase/3-isopropylmalate dehydratase, swivel	IPR015928	-	90%
Blast2go	Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site	IPR020558	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HS67

Fln msg:

Fln protein: MAMYTSSFGSQLDLGSPLHCYGRRDILLARLSPSPNRTTWNRQHSFICSAASSSSSVAQPEAPPATVEDGGPSRKLNKYSSRVTQPKSQGGSQAVLYGVGLSEEDMSKPQVGISSVWYEGNTCNMHLLQLAEAVKEGVTEAGMVGFRFNTVGVSDAISMGTRGMSYSLQSRDLIADSIETVMGAQWYDANISLPGCDKNMPGTLMAMGRLNRPSIMVYGGTIKPGHFQGHTYDIISAFQCYGEYVNGSITDEQRMDVVRNSCPGAGACGGMYTANTMASAIETMGMTIPYSSSTPAEDPLKLDECRLAGKYLLELIKLDLKPRDIITMKSLRNAMVITMALGGSTNAVLHLIAIARSVGLDLTLDDFQKISDEVPFLADLKPSGKYVMEDLHKVGGTPAVIQYLLELGLIDGDCITVTGKTLGENVKNCPPLTEGQKIIRPFKNPIKSTGHIQILYGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMLAAISENPQSFKGSVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQVGGPIALIQNGDTITIDVSKRRIDVALTENEFAERRAKWSPPPYRVNKGTLFKYIKNVKSASEGCVTDE*

Protein Length: 633

Fln nts: GTGTGAGATAAGCATCCATTAAAACGTTACTGCTTCAAGTGGGGTTTGAGACGATAATGATCCCCAATCGGTTAAGTCCATGATTTTAGGTTTAACAAAATCTGATGAAGATTACCGAGACTGAAGCGCCACACTGAAAACCTTCCACAATGCCAAATAAAACGAATTTTTGAAGATGCCTCGTCCATTTTTGGAAAAGTCGTCTAGCCTCAGAACTCTTAGTGTGCCATAAACCATTTAATATAACGCTGGCAGCCTAAAGTCCTAAACCCATTCAATCTCAGGAAAAAGCCTCAGAACTCCTGGTGTGCCATAAAGACTAAAATATATCCATGGCGGCCTAATGTCCTAAACCCATTTAATCTCGTGACCTTGGCCATGTCACATTTTGCTCTAGCCTCGTTACTCCTAGTGTGCCATAAACCATTTAATATATCGTTCGTGACCTATGGCTGTCACTCAATTCAATCTCAGGAAAAAGCAGTTGTCACATTTTGCTCTCTCCCAACTCTGATCCATTTCAAATTACCTCCGAACCTCTGAAATCTCTGTACATTTTAGCAG_-_ATGGCCATGTATACATCCTCCTTTGGAAGCCAACTTGATTTGGGATCGCCTCTGCATTGTTATGGCCGACGAGATATACTCCTCGCCAGACTGAGTCCCAGTCCTAATAGAACTACATGGAACCGTCAACACAGTTTCATCTGCTCTGCTGCTTCTTCGTCTTCATCTGTTGCTCAACCGGAGGCGCCTCCAGCAACTGTGGAGGATGGGGGTCCGAGTCGCAAGCTGAACAAATACAGCAGCAGAGTGACCCAACCCAAGTCCCAGGGGGGATCGCAGGCTGTCCTCTATGGTGTGGGGCTGTCTGAAGAAGACATGAGCAAGCCCCAGGTGGGTATATCTTCCGTTTGGTATGAGGGGAATACATGCAATATGCATTTGCTCCAGCTGGCGGAGGCCGTCAAAGAGGGCGTTACAGAAGCAGGCATGGTGGGCTTCCGTTTCAACACTGTGGGTGTGAGCGATGCCATCTCGATGGGCACCAGAGGCATGAGCTACAGCTTGCAGTCCAGAGACCTCATTGCTGATAGCATTGAGACCGTCATGGGCGCACAGTGGTACGATGCCAATATCTCCCTACCTGGTTGTGACAAAAATATGCCTGGTACCCTTATGGCAATGGGACGCCTCAATCGACCTAGCATTATGGTTTATGGTGGGACCATTAAGCCTGGGCATTTCCAAGGTCACACCTACGACATAATATCAGCCTTTCAGTGCTATGGGGAATATGTCAATGGGTCAATCACTGATGAGCAGCGGATGGATGTGGTGCGCAATTCTTGTCCTGGTGCAGGAGCATGTGGTGGCATGTATACAGCCAATACCATGGCAAGTGCAATTGAGACCATGGGCATGACAATTCCTTACAGTTCTTCAACACCAGCAGAGGACCCATTGAAGCTGGATGAATGTCGTTTGGCAGGCAAATATCTTTTGGAACTGATAAAACTGGATTTGAAACCAAGGGATATCATCACCATGAAATCCCTACGAAATGCAATGGTGATTACAATGGCTCTTGGTGGCTCCACCAATGCCGTCTTGCATTTGATTGCCATTGCCAGATCAGTCGGTTTAGATCTGACACTGGACGATTTTCAGAAAATCAGTGATGAGGTACCTTTTCTTGCAGATCTCAAGCCCAGTGGGAAATATGTAATGGAAGACCTTCATAAGGTTGGAGGAACACCGGCAGTAATTCAATATCTATTAGAGTTAGGACTCATAGATGGTGATTGTATAACAGTTACAGGAAAGACACTTGGAGAAAATGTAAAGAATTGCCCCCCTTTAACAGAGGGTCAGAAAATAATAAGGCCATTCAAAAATCCAATTAAATCAACTGGACACATTCAGATATTGTATGGCAACTTAGCACCGGAGGGTTCTGTTGCGAAGATTACAGGGAAGGAAGGCCTGTATTTTTCAGGTCCTGCTCTTGTGTTCGAAGGAGAAGAGTCCATGTTAGCAGCTATTTCAGAAAATCCACAAAGCTTCAAGGGTTCAGTTGTTGTTATAAGGGGAGAGGGCCCAAAGGGTGGGCCTGGAATGCCAGAGATGCTAACTCCTACTAGTGCCATTATGGGTGCCGGTCTTGGCAAGGAAGTTGCTTTGTTAACGGATGGAAGGTTTTCTGGTGGTTCACATGGATTTGTTGTTGGTCATGTATGCCCTGAGGCACAGGTTGGAGGCCCTATTGCTTTGATCCAAAATGGAGATACAATCACTATTGATGTGAGTAAAAGGAGAATAGATGTGGCCTTAACGGAAAATGAATTTGCCGAGAGGCGGGCAAAGTGGTCTCCTCCACCATACAGAGTTAATAAAGGAACATTGTTCAAGTATATCAAGAATGTAAAATCGGCCTCTGAGGGCTGTGTGACGGACGAATAA___AATGTTAAGTGATTTAAATGTCCAACAAGTTTCAGGTATTAAGGTGTGTCTCATGCAGAATGAACTTCTATTTTTATGGCTAAATTTTCTCCACTTAAGTTGTTCTGGAGGTGTCATTATTGTTAAGACATTTATTGAGCGATACAGTGCTTAAGGGGAATTTTCTAAGTATCTAATTCAACTTGAGTTCTTATAATGCAACCCAGAAGTTGCTGAGCTTTTCTTGTCAAGGGTAATGTCTGTCCTTATCAATTTTGAAATCCATGTATATCCTAATTACTTCATAGAGCAAGAGCAATACGAACCACTTTCTAGTAGATCATCAAATAGTGAACTCTATAATGCTATTTATTTTGCAGTATTTGGAAGACAAATTTTAACATGTGAGGAAAATGAACCAATACCCATTATTTTCCCTTTTTATTCCATCTTTTATTCTTTTTAAGCTTTGGAAGATTCATATACAGATTCATATAATGCATAAGAAACATATTGATGCATCTGTAAATCGGATAAGTTTATGAGTAGATTCTACCAATTGGAGCTGGATGATGATTCAGGCTTTTGAGGAAATTCTGTTTCCTAGCCCCGTTGAGCAGGTGGGGAAGACAGAAGCTTTTCCATGCGAAAACACAGGCAGCTATTAGATCTCACTTTGAACATTTCAGGCAATTGCTGAGTTATGGCATTTCCTCTGGCAGGATTTATGCCAGGGCGATATCTATATCTAAGAGTATGTTGATTCAATCAATATTGCTATTAATTAATTAAGGTTCACCTCAGCTGATATGATTAGTTGAGCAACCATATTGACCTAAAGTT

Fln Alignment:

sp_v1.1_unigene8287___SRKLNKYSSRVTQPKSQGGSQAVLYGVGLSEEDMSKPQVGISSVWYEGNTCNMHLLQLAEAVKEGVTEAGMVGFRFNTVGVSDAISMGTRGMSYSLQSRDLIADSIETVMGAQWYDANISLPGCDKNMPGTLMAMGRLNRPSIMVYGGTIKPGHFQGHTYDIISAFQCYGEYVNGSITDEQRMDVVRNSCPGAGACGGMYTANTMASAIETMGMTIPYSSSTPAEDPLKLDECRLAGKYLLELIKLDLKPRDIITMKSLRNAMVITMALGGSTNAVLHLIAIARSVGLDLTLDDFQKISDEVPFLADLKPSGKYVMEDLHKVGGTPAVIQYLLELGLIDGDCITVTGKTLGENVKNCPPLTEGQKIIRPFKNPIKSTGHIQILYGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMLAAISENPQSFKGSVVVIRXXXXXXXXXXXXXLTPTSAIMGAGLGKEVALLTDGRXXXXXXXXXXXXXCPEAQVGGPIALIQNGDTITIDVSKRRIDVALTENEFAERRAKWSPPPYRVNKGTLFKYIKNVKSASEGCVTDE
F6HS67______________AHKLNKYSSHVTEPKSQGGSQAILYGVGLSDEDMHKPQIGISSVWYEGNTCNMHLLKLSEAVKEGVRDAGMVGFRFNTVGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIPGCDKNMPGTIMAMGRLNRPSIMVYGGAIKPGHFQGHTYDIISAFQVYGEFVSGSITDEQRMNVVRNSCPGAGACGGMYTANTMASAIEVMGMSLPFSSSTPAEDPLKLHECHLAGKYLLDLIKMDLKPRDIITMKSLRNAMVVVMALGGSTNAVLHLIAIARSVGLQLTLDDFQKVSDEVPFLADLKPSGKYVMEDIHKIGGTPAIIRFLLENGFLDGDCITVTGKTLAENAELFPSLPRDQQIIRPLANPIKKTGHLQTLYGNLAPEGSVAKITGKEGLYFSGPALVFEGEEAMIAAIAENPMSFKGKVVIIRGEGPKGGPGMPEMLTPTSAIMGAGLGKDVALLTDGRFSGGSHGYVVGHICPEAHEGGPIGLIENGDIITIDVQKRRMDVQLTDEEMNERRKKWSPPPYKANQGVLYKYIKNVKSASDGCVTDE

SNPs (tot: 84)

Position	A %	C %	G %	T %	Probability
220	33	66			0.997452
222			33	66	0.997452
223	66		33		0.997452
225			33	66	0.997452
270	66		33		0.997452
336	66		33		0.997452
371	50		50		1.0
372			50	50	1.0
375	50	50			1.0
376	50	50			1.0
377	50			50	1.0
378	50			50	1.0
380		50	50		1.0
382		50		25	0.995533
383	50		25		0.995533
385		25	75		0.996473
386	25			75	0.996473
387	50	50			1.0
388	75			25	0.996473
390	75			25	0.996473
391		25		25	0.995533
392	25			75	0.996473
412		25		75	0.996473
446		55	44		1.0
448		44		55	1.0
450	55		44		1.0
455	44			55	1.0
456	44		55		1.0
458		55		44	1.0
459		44		55	1.0
460		44	55		1.0
462	44	55			1.0
464	44	55			1.0
465		44		55	1.0
467	55	44			1.0
479	83		16		0.999991
480			83	16	0.999991
483	83	16			0.999991
484	83	16			0.999991
485	83			16	0.999991
486	83			16	0.999991
491		16		83	0.999991
731	10	90			0.90298
732			10	90	0.90298
734		90	10		0.90298
738	10			90	0.90298
740			10	90	0.90298
741		10		90	0.90298
742		10	90		0.90298
1366		90		10	0.90298
1381	10		90		0.90298
1516	10			90	0.90298
1666	88		11		0.923564
2006			16	83	0.999991
2348		13	86		0.999973
2349	86		13		0.999973
2350	86			13	0.999973
2351	86	13			0.999973
2352	86		13		0.999973
2356	86	13			0.999973
2359			13	86	0.999973
2362		86		13	0.999973
2364	86			13	0.999973
2365		13	86		0.999973
2367	6	13	80		0.999961
2368			86	13	0.999973
2392	88		11		0.999952
2394	88	11			0.999952
2395		88	11		0.999952
2396	88			11	0.999952
2399		11	88		0.999952
2402	88		11		0.999952
2403	88	11			0.999952
2405	88			11	0.999952
2406	88	11			0.999952
2408		11	88		0.999952
2409			88	11	0.999952
2410	88	11			0.999952
2492		22		77	0.999999
2508	12		87		0.992554
2614	80		20		0.995493
2793	10			90	0.90298
2794		90		10	0.90298
2796	12			87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
3219	3231	ATTA ATTA ATTA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain