SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8281

Length: 1165 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8281

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	Isoform 2 of F-box/LRR-repeat protein 14 OS=Arabidopsis thaliana GN=FBL14	-	-	63%
Blast2go	f-box family protein	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	0.0	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q3EC97-2

Fln msg: your sequence is shorter than subject: 235 - 467

Fln protein: VVTLAVTHLVNCLISPGRGLACVLRKCQALQNLHLDMCVGVRDNDLISLAQQCPKLKTLSLRVPSDFSVPILMSNPLRLTDESLKAIAQNCSELESVSISFSDGDFPSSSSFSLAGIISLIEACPIRVLVLDHVYSFNDSGMEALCAAHFLEILELIQCQEVTDEGLQLVKHFPCLSVMRLCRCLGLTDIGLKPLVASHKLQKLKVEDCPQISEKGTQGAAKVVSYKQDLSWIY*

Protein Length: 236

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTGTTAATTGCCTCATCAGCCCAGGTAGAGGACTTGCTTGTGTGCTTAGGAAATGTCAAGCTTTGCAAAATCTTCATCTTGATATGTGTGTTGGGGTAAGAGATAATGATTTGATAAGCCTTGCCCAGCAATGCCCCAAGCTGAAAACCTTGTCATTACGAGTTCCTTCAGATTTCTCCGTTCCTATCCTAATGAGCAATCCACTTCGGTTGACAGATGAGAGCTTGAAGGCCATTGCTCAGAATTGCTCTGAATTGGAATCAGTTTCAATATCATTCTCTGATGGAGACTTCCCTTCCTCATCTTCCTTCAGTCTTGCTGGCATAATTTCATTAATTGAAGCATGCCCTATCCGGGTTTTAGTTCTTGACCATGTTTATTCATTCAATGACAGTGGCATGGAGGCTCTTTGTGCAGCTCACTTTCTAGAGATCCTTGAACTTATACAATGCCAGGAGGTCACTGATGAAGGGCTGCAACTGGTCAAGCACTTCCCATGTTTGAGTGTCATGCGACTTTGTAGGTGCTTGGGTTTGACAGATATTGGACTCAAGCCGCTAGTAGCTTCTCATAAATTGCAAAAGTTAAAGGTGGAAGATTGCCCTCAAATCTCAGAGAAAGGCACTCAAGGTGCTGCAAAGGTTGTCTCCTACAAGCAAGATCTCTCATGGATTTACTGA___TGGATGGTTGACCTTCATTTTCTGAGTCGTAGAATGGTCCATCCATGGATATCATTTGAAGAAATCAGTGCTTATTAACAGGCATTTGATCAATTAGAAGGACAACTTTTAGAAGGACAACTTTTATGAAAGCAGGGTAATTCTAGGTGTAGTGCTATATGTATTATGAACAAATCCTTTGTCTCAAATTTGCTTCCTGACAGAATATGCTTGGAGTGGCCTTTCGCATATATGTACATGCAAGGCTGTCTAGTGGGTAGCTCTTATCCATATGCTGGACTGTTTGAGCGTTTCAAGAGATCAGCTTTCCTTGTACATTTTCTATGTTTGATTTCAGGTTCATAATGTAAATACCTTTCCTGTTGAATTTTTTCCATTTCTCTGGAATCATTTCCCCGACCCCAGCCAAGAAAACTAGCTAGAAAAATCAAGTGAGTGCTTTGAATTGTTTTCATTCTA

Fln Alignment:

sp_v1.1_unigene8281___TLAVTHLVNCLISPGRGLACVLRKCQALQNLHLDMCVGVRDNDLISLAQQCPKLKTLSLRVPSDFSVPILMSNPLRLTDESLKAIAQNCSELESVXXXXXXXXXXXXXXXXXXXXXXXXEACPIRVLVLDHVYSFNDSGMEALCAAHFLEILELIQCQEVTDEGLQLVKHFPCLSVMRLCRCLGLTDIGLKPLVASHKLQKLKVEDCPQISEKGTQGAAKVVSYKQDLSWIY
Q3EC97-2____________SLVELSLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSDSDIIALVQKASHLRSISLRVPSDFTLPLLNNITLRLTDESLSAIAQHCSKLESFKISFSDGEFPSLFSFTLQGIITLIQKCPVRELSLDHVCVFNDMGMEALCSAQKLEILELVHCQEVSDEGLILVSQFPSLNVLKLSKCLGVTDDGMRPLVGSHKLELLVVEDCPQVSRRGVHGAATSVSFKQDLSWMY

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
188	83	16			0.994512
191			16	83	0.994512
192	16			83	0.994512
198	83			16	0.994512
202		16		83	0.994512
203	16			83	0.994512
207	16	83			0.994512
532	66			33	0.997452
565		33		66	1.0
566		16	83		0.999991
567	18			45	1.0
568		18	18		0.999997
569	66	16		16	0.999991
570		83	16		0.999991
571	66	16		16	0.999991
572			75	16	0.99999
573	83			16	0.999991
574		16	16	66	0.999991
575	66	16	16		0.999991
576		16		83	0.999991
579		16	83		0.999991
584	83		16		0.999991
585	83			16	0.999991
586		16	83		0.999991
587	16	83			0.999991
589			83	16	0.999991
591	16			83	0.999991
715		11	88		0.999952
957	11		88		0.923564
1028		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain