SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8276

Length: 2003 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8276
GCAATTGGCTGGTCTCCAGTGGATCTTCTTGATTTCATGCGTCAAGTTTCAACATTCGGTCTGTCACTTGTTAGGCTGGATATTAGACAGGAATCTGACAGACACACTGATGTTGTTGATGCAATTACAAAGCATTTAGGCATTGGATCCTACAAAGAGTGGTCAGAGGAACGACGACAAGCATGGCTTTTGTCAGAACTACAAGGGAAACGCCCCTTGTTTGGGCCAGACCTCCCGAAAACAGATGAGGTTCGAGATGTTCTAGACACATTTCATGTGATATCTGAGCTTCCTGCTGACAACTTTGGAGCTTACATTATTTCAATGGCAACTGCAGCATCAGATGTTTTAGTAGTTGAGTTATTACAACGTGAATGCCATGTAAAAAAGCCATTACGTGTTGTACCATTATTTGAGAAACTTGCAGATCTAGAGGCTGCTCCTGCTGCTTTGGCTAGATTGTTTTCAATAAACTGGTACAGAAACAGAATTGATGGAAAGCAAGAAGTCATGATTGGTTACTCTGATTCTGGAAAGGATGCTGGTAGGCTAAGTGCAGCTTGGGCTTTGTACAAAGCACAGGAGGACCTTATAAAGGTTGCTAAAGAATTTGGTGTTAAGTTGACAATGTTCCATGGTCGTGGAGGAACTGTAGGCAGGGGGGGAGGCCCAACCCATCTGGCCATATTGTCACAACCTCCAGATACAATTCATGGCTCTTTTCGGGTCACTGTTCAAGGGGAAGTCATAGAACAGTCTTTTGGTGAGGAACATTTGTGTTTCAGAACTCTCCAACGATTTACTGCTGCCACTCTGGAGCATGGAATGCGGCCTCCAGTTGCACCAAAGCCTGAGTGGCGTGCACTGATGGATGAAATGGCTGTTGTTGCTACAAAGGAGTACAGATCAATTGTTTTCCAGAACCCGAGATTCGTTGAATATTTTCGTTCTGCAACACCAGAATTGGAGTATGGTCGAATGAACATTGGGAGTCGCCCCTCAAAAAGGAAGCCAAGTGGAGGAATTGAGTCACTCCGTGCCATCCCATGGATATTTGCTTGGACACAAACCCGATTTCATCTTCCTGTTTGGCTAGGATTTGGTGGAGCATTCAAGCATGTTATGGAGAAGGATATAAGAAATCTCCATACACTGCAGCAAATGTACAATGAATGGCCATTCTTTCGGGTTACAATTGATCTAGTTGAAATGGTTTTTGCAAAGGGTGATCCAGGGATAGCTTCTTTGTATGACAAACTACTGGTATCTGATGATTTGTGGGCCATTGGTGAACAATTGAGGGCTAACTATGTTGAAACCAAAGATTTGCTACTGCAGGTTGCTGGACATAAAGATCTCCTTGAAGGTGATCCATACTTGAAACAGCGGCTCAGACTTCGTGACTCATACATTACAACTCTGAATGTTTGCCAGGCTTATACCTTGAAAAGAATTAGAGACCCCAACTATCATGTAAATCTTAGGCCTCATTTGTCAAAGGAAAGTTCAACCAAACCGGCAGCTGAATTGGTCAAACTTAATCCAACGAGTGAGTATGCACCAGGTCTGGAGGATACATTAATTCTAACCATGAAGGGCATAGCAGCTGGTATGCAGAACACTGGTTAGAAGGATTTTGGCAACAGATCAAGTATTTCTCAGGTTAGGACTATAATGGAGGTTTCTTGAGACCTACTTGTGAGGGGCCTTATCCAGATTCCAGTGTTAAAGGCAGCTTCTAAATGTGTCAAAGCACCAGCAAAAATACTGATCTGCCAGTGTAGATATGGTAATTTAATAAGCTTGAGAAGAGAGTGCATTCTGGTTGTCAGTTGATAACCATCAAGGATTTTAGTATAATGAGTAGAGGATTGTTATGATCTTTAAGATCCCTAATATGTTTATTTATATATATATATATATATATGGAAAAAACCTAAAACATGTATTTTTGTTAACTGGACTTGAGGACCAGGCCTCCTTTATATGCAAGGCTTGGGAAG

Ace file of the UniGene sp_v1.1_unigene8276

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoenolpyruvate carboxylase n=3 Tax=Picea RepID=CAPP_PICAB	-	-	92%
FL-Next	tr=Phosphoenolpyruvate carboxylase; Picea abies (Norway spruce) (Picea excelsa).	-	-	97%
Blast2go	phosphoenolpyruvate carboxylase	-	-	94%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9SWG7

Fln msg: your sequence is shorter than subject: 543 - 955

Fln protein: AIGWSPVDLLDFMRQVSTFGLSLVRLDIRQESDRHTDVVDAITKHLGIGSYKEWSEERRQAWLLSELQGKRPLFGPDLPKTDEVRDVLDTFHVISELPADNFGAYIISMATAASDVLVVELLQRECHVKKPLRVVPLFEKLADLEAAPAALARLFSINWYRNRIDGKQEVMIGYSDSGKDAGRLSAAWALYKAQEDLIKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSFRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPVAPKPEWRALMDEMAVVATKEYRSIVFQNPRFVEYFRSATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGGAFKHVMEKDIRNLHTLQQMYNEWPFFRVTIDLVEMVFAKGDPGIASLYDKLLVSDDLWAIGEQLRANYVETKDLLLQVAGHKDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYHVNLRPHLSKESSTKPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG*

Protein Length: 544

Fln nts: GCAATTGGCTGGTCTCCAGTGGATCTTCTTGATTTCATGCGTCAAGTTTCAACATTCGGTCTGTCACTTGTTAGGCTGGATATTAGACAGGAATCTGACAGACACACTGATGTTGTTGATGCAATTACAAAGCATTTAGGCATTGGATCCTACAAAGAGTGGTCAGAGGAACGACGACAAGCATGGCTTTTGTCAGAACTACAAGGGAAACGCCCCTTGTTTGGGCCAGACCTCCCGAAAACAGATGAGGTTCGAGATGTTCTAGACACATTTCATGTGATATCTGAGCTTCCTGCTGACAACTTTGGAGCTTACATTATTTCAATGGCAACTGCAGCATCAGATGTTTTAGTAGTTGAGTTATTACAACGTGAATGCCATGTAAAAAAGCCATTACGTGTTGTACCATTATTTGAGAAACTTGCAGATCTAGAGGCTGCTCCTGCTGCTTTGGCTAGATTGTTTTCAATAAACTGGTACAGAAACAGAATTGATGGAAAGCAAGAAGTCATGATTGGTTACTCTGATTCTGGAAAGGATGCTGGTAGGCTAAGTGCAGCTTGGGCTTTGTACAAAGCACAGGAGGACCTTATAAAGGTTGCTAAAGAATTTGGTGTTAAGTTGACAATGTTCCATGGTCGTGGAGGAACTGTAGGCAGGGGGGGAGGCCCAACCCATCTGGCCATATTGTCACAACCTCCAGATACAATTCATGGCTCTTTTCGGGTCACTGTTCAAGGGGAAGTCATAGAACAGTCTTTTGGTGAGGAACATTTGTGTTTCAGAACTCTCCAACGATTTACTGCTGCCACTCTGGAGCATGGAATGCGGCCTCCAGTTGCACCAAAGCCTGAGTGGCGTGCACTGATGGATGAAATGGCTGTTGTTGCTACAAAGGAGTACAGATCAATTGTTTTCCAGAACCCGAGATTCGTTGAATATTTTCGTTCTGCAACACCAGAATTGGAGTATGGTCGAATGAACATTGGGAGTCGCCCCTCAAAAAGGAAGCCAAGTGGAGGAATTGAGTCACTCCGTGCCATCCCATGGATATTTGCTTGGACACAAACCCGATTTCATCTTCCTGTTTGGCTAGGATTTGGTGGAGCATTCAAGCATGTTATGGAGAAGGATATAAGAAATCTCCATACACTGCAGCAAATGTACAATGAATGGCCATTCTTTCGGGTTACAATTGATCTAGTTGAAATGGTTTTTGCAAAGGGTGATCCAGGGATAGCTTCTTTGTATGACAAACTACTGGTATCTGATGATTTGTGGGCCATTGGTGAACAATTGAGGGCTAACTATGTTGAAACCAAAGATTTGCTACTGCAGGTTGCTGGACATAAAGATCTCCTTGAAGGTGATCCATACTTGAAACAGCGGCTCAGACTTCGTGACTCATACATTACAACTCTGAATGTTTGCCAGGCTTATACCTTGAAAAGAATTAGAGACCCCAACTATCATGTAAATCTTAGGCCTCATTTGTCAAAGGAAAGTTCAACCAAACCGGCAGCTGAATTGGTCAAACTTAATCCAACGAGTGAGTATGCACCAGGTCTGGAGGATACATTAATTCTAACCATGAAGGGCATAGCAGCTGGTATGCAGAACACTGGTTAG___AAGGATTTTGGCAACAGATCAAGTATTTCTCAGGTTAGGACTATAATGGAGGTTTCTTGAGACCTACTTGTGAGGGGCCTTATCCAGATTCCAGTGTTAAAGGCAGCTTCTAAATGTGTCAAAGCACCAGCAAAAATACTGATCTGCCAGTGTAGATATGGTAATTTAATAAGCTTGAGAAGAGAGTGCATTCTGGTTGTCAGTTGATAACCATCAAGGATTTTAGTATAATGAGTAGAGGATTGTTATGATCTTTAAGATCCCTAATATGTTTATTTATATATATATATATATATATGGAAAAAACCTAAAACATGTATTTTTGTTAACTGGACTTGAGGACCAGGCCTCCTTTATATGCAAGGCTTGGGAAG

Fln Alignment:

sp_v1.1_unigene8276___LLDFMRQVSTFGLSLVRLDIRQESDRHTDVVDAITKHLGIGSYKEWSEERRQAWLLSELQGKRPLFGPDLPKTDEVRDVLDTFHVISELPADNFGAYIISMATAASDVLVVELLQRECHVKKPLRVVPLFEKXXXXXXXXXXXXXXFSINWYRNRIDGKQEVMIGYSDSGKDAGRLSAAWALYKAQEDLIKVAKEFGVKLTMFHXXXXXXXXXXXPTHLAILSQPPDTIHGSFRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPVAPKPEWRALMDEMAVVATKEYRSIVFQNPRFVEYFRSATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGGAFKHVMEKDIRNLHTLQQMYNEWPFFRVTIDLVEMVFAKGDPGIASLYDKLLVSDDLWAIGEQLRANYVETKDLLLQVAGHKDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYHVNLRPHLSKESSTKPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG
Q9SWG7______________LLDFMRQVSTFGLSFVKLDIRQESDRHSDVADAITRHLGIGSYKEWSEEQRQAWLLSELQGKRPLFGPDLPKTDEVRDVLDTFHVISELPADNFGAYIISMATAASDVLVVELLQRECHVKKPLRVVPLFEKLADLEAAPAALARLFSINWYRNRIDGKQEVMIGYSDSGKDAGRLSAGWALYKAQEDLIKVAKEFGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSFRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPVAPKPEWRELMDEMAVVATKEYRSIVFQDPRFVEYFRSATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVMEKDIRNLHMLQQMYNEWPFFRVTIDLIEMVFAKGDPGIAALYDKLLVSDDLWAIGEKLRANYGETKDLLLQVAGHKDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYHVNLRPHLSKESSTKPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
429	14		85		0.993533
738		88		11	0.923564
1656	95		4		0.999983
1658		4		95	0.999983
1659	4			95	0.999983
1683		2	97		0.969538
1926	85		14		1.0
1928	63		31		1.0
1930	20		80		0.995493
1931			60	40	1.0
1932	83		16		0.994512
1933	50		16	33	1.0
1934	80		20		0.995493
1935	80		20		0.995493
1936	80		20		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1907	1927	TA TA TA TA TA TA TA TA TA TA T	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain