SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8274

Length: 421 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene8274
TGATTTTGCATCGAGCAAATTTTTGTGCCCGTGTAAACCGTCATAGTAAGTGAAGCAGCAATAAGAGGAACACAATAGTTAAAGGAAAGCTATCAAGTAAGCATAGAACGCTGAACTTGCAGAAGAGGCTTCTGTACAGCATATGGCCTCTGTAAGTGTTGCATCTGCAGCTGCAGCAAATACAGGCCGTGGTAACGCTATTGGAGTCGACAAACTTCCCGAAGAGATGAATGAGATGAAGATTAAAGATGATAAGGAAATGGAAGCTACTGTAGTGGATGGAAATGGTACAGAGACGGGCCATATCATAGTCACCACCATTGGTGGCAGGAATGGTCAACCTAAGCAAACCATAAGTTACATGGCAGAACGTGTGGTAGGAACTGGATCTTTTGGAATTGTCTTTCAGGCCAAATGCTTA

Ace file of the UniGene sp_v1.1_unigene8274 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycogen synthase kinase-3 beta, putative n=2 Tax=fabids RepID=B9RFP5_RICCO	-	-	3.0e-34	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	glycogen synthase kinase-3	-	-	3.97623e-34	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	3.97623e-34	95%
Blast2go	meristem structural organization	GO:0009933	Biological Process	3.97623e-34	95%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	3.97623e-34	95%
Blast2go	cytosol	GO:0005829	Cellular Component	3.97623e-34	95%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL18

Fln msg: Distance to subject end: 321 aas, your sequence is shorter than subject: 93 - 422

Fln protein: MASVSVASAAAANTGRGNAIGVDKLPEEMNEMKIKDDKEMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGTGSFGIVFQAKCL

Protein Length: 94

Fln nts: TGATTTTGCATCGAGCAAATTTTTGTGCCCGTGTAAACCGTCATAGTAAGTGAAGCAGCAATAAGAGGAACACAATAGTTAAAGGAAAGCTATCAAGTAAGCATAGAACGCTGAACTTGCAGAAGAGGCTTCTGTACAGCAT_-_ATGGCCTCTGTAAGTGTTGCATCTGCAGCTGCAGCAAATACAGGCCGTGGTAACGCTATTGGAGTCGACAAACTTCCCGAAGAGATGAATGAGATGAAGATTAAAGATGATAAGGAAATGGAAGCTACTGTAGTGGATGGAAATGGTACAGAGACGGGCCATATCATAGTCACCACCATTGGTGGCAGGAATGGTCAACCTAAGCAAACCATAAGTTACATGGCAGAACGTGTGGTAGGAACTGGATCTTTTGGAATTGTCTTTCAGGCCAAATGCTTA

Fln Alignment:

sp_v1.1_unigene8274___GVDKLPEEMNEMKIKDDKEME--ATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGTGSFGIVFQAKCL
B8LL18______________GVERLPREMNIMKIKDDKEMEEKATVVAGNVTEAGHIIATTIGGRNGEPKQTISYMAERVVGTGSFGIVFQAKCL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
189		90		10	0.90298
191		10		90	0.90298
369		10		90	0.90298
371	90	10			0.90298
372	10	90			0.90298
382		88	11		0.923564
383			83	16	0.994512
385	16			83	0.994512
386		16		83	0.994512
387	16			83	0.994512
388	83		16		0.994512
391	16	83			0.994512
394			83	16	0.994512
398	66		33		0.997452
400	66	33			0.997452
401	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain