SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8270

Length: 1919 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8270

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CUE domain containing protein	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	cue domain containing protein	-	-	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin system component Cue	IPR003892	-	0.0	68%
Blast2go	UBA-like	IPR009060	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV65

Fln msg:

Fln protein: MSALVCGKRSLFEDLHTPPPISKRLRCSGSNSPIRFSSNSPTRSPTATDIHNQNNSTDIHYLSQLRGLFPDMDEQHLEAVLESCGNDLASAIKSLNELRLGRERDSTPCKSTADSSIVSHVDQTTEGNTDIGIPVEERVANDHVGGAAAAIPVNGSDWVELLLQEMQNASDMDDARIRASRALEALEKAIVSRTGSIVEDLQKENMVLRQQVEGLSRDNGILKRAVAIQHERQKEHDERASELQNLKQILSQYQEQLRTLQVNNYALTLHLRQAQESTSIPGHFHPDVF*

Protein Length: 291

Fln nts: ATGGGGACGCTTCTCGAGGGCGTTGCAGGGTTCCTCTCTTTCACTATTTTTTAATCTCTGCACACCTCCCAATTAAGGTCAACTATTTTAACCCGTCGTGACCTTGGCTGTCACTCACTTTTCACAAACCCCTTTTTAGCGTCGTGACCTTGGCTGTCACTCAATTTTTAATGCCTTCGTGGGTTTAATTCTTCTACTCTAGAAAGCCCATTTCAATTCGCTCCTCTGCGTTGTATTAATTGGGGTTTTCTCGCACAAATTCTTTATTTTTCGACCCTTTACCTGAACGGGACTGGTAGTATATACAGGCAGAGGAGATCTTAAGTGATTGGTTGCCATCGGCATTACAATTTACAAGAAGAAGAGGAGGAAAGAAGGGCAGCAGCGCTAATCTCTGGATGGACTGAGGCAATTCAGGGGTTTTTAAGGGGTTTTGAGAGCCAAATTCAAGAGGCAGTTTTACTAGTATTACACAAATACTTTAGCGATAAGATTGGAAACC_-_ATGTCTGCGCTAGTCTGCGGAAAGAGGTCACTTTTTGAAGATCTGCATACTCCGCCACCCATCTCCAAGAGGCTTCGCTGTTCCGGTAGTAATTCGCCAATCCGATTCTCTTCCAATTCTCCCACAAGGAGCCCCACAGCAACAGATATTCATAACCAAAACAACTCTACCGATATTCATTATCTTTCTCAACTCAGAGGGCTTTTCCCCGATATGGATGAACAGCATCTTGAAGCAGTGTTGGAGTCATGTGGCAATGATCTTGCTTCTGCAATCAAGAGTTTGAATGAGCTCCGGTTAGGACGCGAAAGAGATTCAACTCCTTGCAAAAGCACAGCAGATTCAAGCATTGTTTCCCATGTTGATCAAACCACAGAAGGAAATACAGATATCGGCATTCCAGTTGAAGAACGGGTTGCTAATGACCATGTGGGAGGGGCTGCTGCAGCCATTCCAGTTAATGGTTCTGACTGGGTGGAGCTTCTTTTGCAAGAGATGCAGAATGCATCTGATATGGATGATGCAAGAATACGTGCTTCGAGAGCATTGGAGGCACTTGAAAAGGCAATAGTTAGTCGCACGGGTTCTATTGTGGAGGACTTGCAAAAGGAAAACATGGTGCTGAGGCAGCAAGTCGAAGGTCTTTCTCGTGATAATGGCATTCTCAAACGAGCTGTAGCTATACAGCATGAGCGGCAGAAGGAACATGATGAAAGGGCCAGTGAATTGCAGAATCTGAAGCAGATTTTATCACAGTATCAAGAACAGCTAAGGACATTGCAGGTAAATAATTACGCTCTAACACTACACCTACGCCAAGCTCAGGAGAGTACGTCCATTCCAGGGCACTTTCACCCTGATGTCTTCTGA___AAGCTTGATCAACAAGGGTTTGCTTTAAGGATTTGAAAACAAATCAAGCGGAAGTTGAAACATATCTTATGTTTATAAGGTGGTTATGTTAATTAGTTGTTTGTTATTCTTTTAAGATGTTGGTCTCGCTTAGTATTCTTGGAACTAAGTATTCTTGGAACTAAGCGTGTAAAAGTTCCCATACTCTCCTCGTGTCAACCTGCAAAGAGTTTCATGATTCTACCATTTGATAGGATGCATTATTGAAGTTTATATGAAAATGGTGAAACGCCAGCACTTAAACTTGGATGATAGTACTAAATGTTTGGGAGCTATTCTCTCTTCTCCTACAGAACATAATATGCACTTTTGAGGTAAAAGACGAAGCAGGTTTAGGAGGATGTTTAATTAAAATAATGAATTACATATCTTTCGTGAGGATGCCTTGAAGCTTCCCGCTTTGGTGGCTTCTGGAATTATTTGGATTTTGTAAGGTTTGTTCAAACTCTAATTGATACTCTAGTCCCCATGTGGGTTGTTCAAACTCCTGTTTGATTGTCTTCTAAAG

Fln Alignment:

sp_v1.1_unigene8270___MSALVCGKRSLFEDLHTPPPISKRLRCSGSNSPIRFSSNSPTRSPTATDIHNQNNSTDIHYLSQLRGLFPDMDEQHLEAVLESCGNDLASAIKSLNELRLGRERDSTPCKSTADSSIVSHVDQTTEGNTDIGIPVEERVANDHVGGAAAAIPVNGSDWVELLLQEMQNASDMDDARIRASRALEALEKAIVSRTGSIVEDLQKENMVLRQQVEGLSRDNGILKRAVAIQHERQKEHDERASELQNLKQILSQYQEQLRTLQVNNYALTLHLRQAQESTSIPGHFHPDVF
A9NV65______________MSALVCGKRSLFEDLHTPPPISKRLRCSGSNSPIRFSANSPTRSPTATDIHHQNQSTEIHHLSQLRGLFPDMDEQHLEAVLESCGNDLASAIKSLNELRLGRERDSIPCKSTAYSIIASHVDQTTEVNTDIGLPVEDRVANDQVGGAAAAIPVNGSDWVELLLQEMQNASNMDDARVRASRALEALEKAIVSRTGSMAENLQKENVVLRQQVEGLSRDNSILKRAVAIQHERQKEHDERGNELQNLKQLLSQYQEQLRTLQVNNYALTLHLRQAQESTSIPGRFHPDVF

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
96	75			25	0.996473
97		25	75		0.996473
100	75		25		0.996473
102	75	25			0.996473
105		75		25	0.996473
106		75	25		0.996473
107			25	75	0.996473
109		75		25	0.996473
110			25	75	0.996473
144	75		25		0.996473
146			25	75	0.996473
147	25	75			0.996473
150		25	75		0.996473
153		75	25		0.996473
154			25	75	0.996473
157			25	75	0.996473
162	75	25			0.996473
165	25	75			0.996473
193		33		66	1.0
442	16		83		0.994512
443		83		16	0.994512
444		83	16		0.994512
445	83		16		0.994512
446	83		16		0.994512
702	91		8		0.999766
1084	90			10	0.90298
1088	10		90		0.90298
1089			20	80	0.999996
1098	11		88		0.923564
1099		11	88		0.923564
1103	88	11			0.923564
1224		87	12		0.992554
1240		88	11		0.923564
1241			11	88	0.923564
1893	18	9		72	0.999994
1900	16	83			0.994512
1901	16	66		16	0.988813

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain