SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8239

Length: 1576 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8239

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative endosomal Vps protein complex subunit [Oryza sativa Japonica Group]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	charged multivesicular body protein 3	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Snf7	IPR005024	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA16

Fln msg:

Fln protein: MEAVKAILKPRPTPQQQMREWQRRLKQECRNIDRHIRDIQREEKRVQKEVKDAAKRNDMTSAKNLAKEIVRSRQAVQRLYENRAQLNSISMHLGESVATARAVGHLSKSTEVMKLVNGLMKAPEVAATMQEFTTEMTKAGVIEEVVNDSLDSALDSEDIEEETEEEVDKVLTEIAGETAAQLPAAARREKIKQPAQKEKQKEEEQPVAEGVDDEQELEEIRARLANVRG*

Protein Length: 231

Fln nts: AGAGTCATGACAAGGCCTGTCAGTCCCCACTAAACCCGCGAATCAATACGCCTTTCTTTTCCAACACTGCACGACCCCTTTGCTTCAGAATTGTAATGTTATTATCCTCCCAGGAGCGGGTTCGATCCACGCAGAGTTCGGATCAGGATCTCAGATAATTGTCTGTTATTTTTTCGAACACCACA_-_ATGGAGGCCGTCAAGGCAATCTTAAAGCCGAGGCCAACTCCACAGCAACAAATGCGCGAGTGGCAGAGACGCCTCAAACAGGAGTGTAGGAATATTGATCGCCATATTCGCGATATTCAGCGTGAAGAAAAAAGAGTACAGAAAGAAGTCAAGGATGCAGCAAAGCGGAATGACATGACGTCGGCAAAGAATTTGGCAAAAGAAATTGTAAGATCGAGGCAAGCTGTTCAGCGCCTTTATGAGAACAGGGCACAGCTGAATTCGATATCTATGCACCTTGGAGAAAGTGTTGCAACTGCTCGGGCTGTTGGACACTTGTCAAAAAGTACTGAGGTGATGAAGCTCGTGAATGGCCTCATGAAGGCTCCAGAAGTGGCTGCCACAATGCAAGAATTCACCACAGAGATGACTAAGGCAGGAGTCATTGAGGAGGTGGTGAATGATTCCCTGGATTCTGCACTTGACTCTGAGGATATTGAAGAAGAAACTGAAGAGGAAGTTGACAAAGTATTAACTGAAATTGCTGGGGAGACAGCGGCACAGCTACCTGCAGCTGCAAGAAGAGAGAAGATTAAGCAGCCTGCTCAGAAGGAAAAACAGAAGGAAGAGGAACAACCTGTTGCTGAGGGCGTTGATGATGAACAAGAACTGGAAGAGATAAGGGCACGACTTGCAAATGTTCGTGGATAA___ATAAAGACCATTTGTATGTGGAAACAGAAAAAAAGTTATGCCTGTGTTTAAATATCTTGTAACTGTTTGTAGTATATCCCATGCATCTACAGTTTGCAACATTATGGTATGCACAGATATCCATTTTACTGGTTGATGAAAAAGCCACTAAGCAGAACAAGATAACATAGAAGAGCCGTTGGGTTACTATTGTCCACAAGTCCAATTTAATATGCCAGCAATTAGCATTCCCTTCCGATGTTCAGGATATTGTTGATCACAGTATAATCACTCGCTTTATCTTCTTGCTTCATGATATTGTTGGATATAAGTTATGTATTGTATAACCACCCGCTTTATCTTTTCATTAAGACATCCACGAGCAACACCATTTATCGATTTAATTTGTATGTTAGCTTCCAAATGACATGCATTTAAAATGCTAATCCATCTGTGTTATCAGAGGAAACATCAACGACTGCATGTTACAAGTTTGATGGATCAATATCTGTAGGTATCTGGAATATCAACATTTCAGGATTAATTATTACGCCTAATATTACGGGCTTGGACTCCATTAAATGGATATCTGAGTATTTGAACACATTGAGCAATGATTTCTTCTGATATCTCAGTATTTGAAAAAATTCATTCAGAGCAGCTTATATACGCTGTGTTATGTGAACTGTGGTCTGCACAAACTAACTAAAATGCCATTTAAC

Fln Alignment:

sp_v1.1_unigene8239___RPTPQQQMREWQRRLKQECRNIDRHIRDIQREEKRVQKEVKDAAKRNDMTSAKNLAKEIVRSRQAVQRLYENRAQLNSISMHLGESVATARAVGHLSKS-TEVMKLVNGLMKAPEVAATMQEFTTEMTKAGVIEEVVNDSLDSALD
D5AA16______________KKTPAELLRENKRMLDRSIREIERERQGLQNQEKKLIAEIKKTAKQGQMAAVKVMAKDLIRTRHQITKFYALKSQLQGISLRI-QTLKSTQSMGEAMKGVTKAMRQMNRQMNLPALQKIMQEFERQNERMEMVTEVMGDAIDDALE

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
51	83		16		0.994512
52		83	16		0.994512
54		83	16		0.994512
143			87	12	0.992554
153		88	11		0.923564
154			11	88	0.923564
165		14		85	0.993533
227		11		88	0.923564
300			88	11	0.999952
659		8	88	2	0.999999
692		94		5	0.998397
912	66		33		0.997452
973	20			80	0.995493
974		40	60		1.0
975		80		20	0.995493
1035	83		16		0.994512
1042	87		12		0.992554
1043	87		12		0.992554
1044		87	12		0.992554
1088	87		12		0.992554
1107		11		88	0.923564
1420		57		42	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain