SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8238

Length: 1159 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8238

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CCAAT-box binding factor HAP3 n=7 Tax=Selaginella moellendorffii RepID=D8RRZ5_SELML	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	ccaat-box binding factor hap3	-	-	85%

Source	InterPros	Term	Type	Identity
Blast2go	Transcription factor, NFYB/HAP3, conserved site	IPR003956	-	85%
Blast2go	Transcription factor, CBFA/NFYB, DNA topoisomerase	IPR003957	-	85%
Blast2go	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	85%
Blast2go	Histone-fold	IPR009072	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABK1

Fln msg: your sequence is longer than subject: 194 - 154

Fln protein: MGGRFGWVVLQVSHLRRAFGSLDDKKHILIVFIHLPSKQRAAAAMADLASSVTSQESPHSEDTNNNSQNQGSNAREQDRFLPIANISRIMKKAVPANAKIAKDAKDTVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMGTLGFEDYVEPLKLYLHKYREAEGDSKGAATSRSGVGDSTKKDSSNFGR*

Protein Length: 195

Fln nts: CGTCGTGACCTTGGCT_-_ATGGGGGGACGGTTTGGATGGGTTGTTTTGCAGGTTTCTCACCTGCGGCGCGCGTTTGGTTCGTTGGATGACAAAAAACACATTCTAATTGTATTTATTCATCTCCCCTCCAAGCAGAGAGCAGCGGCAGCCATGGCAGATTTAGCGAGCTCCGTCACCAGCCAAGAAAGTCCTCACTCAGAAGATACGAACAATAACAGCCAAAACCAGGGTTCTAATGCCCGGGAGCAGGATCGGTTCCTCCCCATTGCGAACATAAGCCGAATTATGAAGAAGGCAGTTCCTGCCAACGCCAAGATCGCAAAGGACGCCAAGGACACCGTCCAAGAATGCGTTTCCGAGTTCATCAGTTTCATTACCAGCGAGGCGAGCGACAAGTGCCAGCGTGAAAAGCGGAAGACAATCAACGGAGACGACTTGTTATGGGCCATGGGTACTCTAGGGTTTGAGGACTACGTGGAGCCTCTCAAGCTTTACTTGCACAAATATAGAGAGGCGGAGGGTGACAGCAAAGGAGCTGCTACTAGCAGATCTGGTGTGGGAGATTCTACTAAGAAAGATTCGAGTAATTTTGGAAGGTGA___ATAAATTATGTTCGATAAACCAGGGATTGAACCATATTCAACAGATTTTGCAGGAAGTGGTCATTAGAGAATCTGTATAAGATGCTTGGAAGGATGAAATTGTGGGATTGGAAGCTCCTAGTAATAAAATACATGTTTAATTTTTTTGAAATAATAAAATAACTTGTGATTAAAGTTTTGCCGAGTAACCAATATGATCATTGTACATAAGATAAATGCATGACTGTAGCTCTCTCATTTTAGTTGCAATGTATTGCTTCTTTGCCAGATTTTTTTGGCACTTATTACCCTTTTTTCTGACCTGCAAATTATGGCGTCATTATGTCTTGGAAGATGAAATGAGACTAGTTCCACCTGTATTGCTTCGGTCAACTGCATGTAATTCTAGATGACTTCTTCTGTTATGCTTTACTCTGAACAGTTTGATTGGAGCATCAGTTATTGTTATTTCCTTCTCTCCAGGCTATCTTTTCTTCTTGTCTTCAAGCACTAGATTGCTTTGGAAAGCTCAATCTTTCAGTACATGTTGCACATCAAATTTTTTAATGATAGAAAACATCA

Fln Alignment:

sp_v1.1_unigene8238___SSVTSQESPHSEDTNNNSQNQGSNAREQDRFLPIANISRIMKKAVPANAKIAKDAKDTVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMGTLGFEDYVEPLKLYLHKYREAEGDSKGAATSRSGVGDSTKKDSSNFG
D5ABK1______________SSVTSQESPHSEDTNNNSHNQGSNAREQDRFLPIANISRIMKKAVPANAKIAKDAKDTVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMGTLGFEDYVEPLKLYLHKYREMEGDSKGAAASKSGMGDPTKKDLSNFG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
546	88	4	8		0.999262
549	92			8	0.999718
604	16			83	1.0
712		11	88		0.999952
1039	88	11			0.923564
1080			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain