SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8236

Length: 1743 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8236

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDSL-motif lipase/hydrolase family protein	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	82%

Source	InterPros	Term	Type	Identity
Blast2go	Lipase, GDSL	IPR001087	-	82%
Blast2go	Esterase, SGNH hydrolase-type	IPR013830	-	82%
Blast2go	Esterase, SGNH hydrolase-type, subgroup	IPR013831	-	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNG4

Fln msg:

Fln protein: MIGPRRPLFVLFGSSIVQYSFANGGWGAHLADIYARKADILVRGYSSWNSRRALQVLDQIFPKGDSQQPSLIIVYFGGNDSMGPHPSGLGPHVPLSEYIDNMRKIATYLKALSESTRLIFLSCPPVNEDMLNTDSRILSTIARTNELSRHYSEACIELCKEMGLKVVDLWSAIQTRPDWRTSCFTDGIHFSAEGSIIVVEEILKVLKEAEWEPSLHWKNIPTEFGESSPYDVVASDNKSTINVSEFTFHREKQWD*

Protein Length: 257

Fln nts: CGATGGGATGGGTAGTTGTTAATTTAGGATTTCAATGATATCGACTCTGCTATTTCAAAATCTGCATATGTCAAGAATCATTTATAACCATGACAAAGTAATCTCATAAGTCAAACAGAACCTGTCAAGATCGTGACAACGTAACCTCAGAGGTGAGACACCAGCTTTTGGAGCGAAGTAGGTGCCATTCACTTATCAGAGGACGAACCAAGTAACTAACATCGCCCCACGCATTTATTGTTGAGCTGTGTTTCTTTTATTGTCTACCTGAAAACTTTTTTTGATGGTGCTCATTGATACGGAAATCTCTCCTTGTACTTGCACATATATATTATATATATATAAACATATTTTCCCAAGACGCGGAGTGTGCATTTGGACCTGTACATCCTCGATCGTGGCCAGCTTTCAACTCCGAAAGCTGAGCTTGGATTCACGGTAGAAAGGAGAGAAA_-_ATGATCGGACCACGTCGGCCATTGTTTGTGCTGTTTGGTTCCTCCATTGTGCAGTACAGCTTTGCCAATGGTGGCTGGGGAGCTCATCTTGCTGACATCTATGCACGCAAGGCAGATATTCTGGTACGAGGGTATAGTTCGTGGAACTCCAGGCGGGCACTGCAAGTGTTAGATCAAATATTTCCCAAGGGTGATAGTCAACAGCCCTCATTAATTATTGTGTACTTTGGTGGAAATGATTCTATGGGGCCCCACCCATCAGGCTTAGGTCCTCATGTACCTCTTTCTGAATACATTGACAACATGAGAAAAATAGCAACTTATCTTAAGGCCCTCTCAGAATCAACACGGCTAATTTTTTTAAGTTGCCCACCCGTTAACGAGGATATGCTGAATACTGATTCAAGGATTCTTAGCACTATTGCACGGACGAATGAATTAAGTCGACATTATTCTGAAGCCTGTATAGAGCTCTGCAAGGAGATGGGTCTGAAAGTTGTCGATCTTTGGTCAGCTATTCAAACAAGGCCAGATTGGCGAACATCCTGCTTCACAGATGGTATTCATTTCTCAGCAGAGGGTAGCATTATTGTCGTTGAGGAAATTTTGAAAGTTTTAAAGGAAGCAGAATGGGAACCTTCTTTGCACTGGAAGAATATACCAACAGAATTTGGTGAATCATCACCTTACGATGTTGTTGCATCTGACAATAAGAGCACCATCAATGTTTCGGAATTTACTTTTCACAGAGAGAAGCAATGGGATTAA___ATTATGGCCTCTTATTTATCTCATAGAAAGTTTTGCTAGGAATTCATTTTTATATGAATTATTCAGCCTACTTTCTATAGGTAATGGTTATTTTCTTGATGCCAGTGTTGTAAGAATTGGTTGATATAATTACCGATTAATCTCCTTCGGGAGATAAATTTATGTTTTATTTAGGCAACGCGTCTCTGGAGATCTCTTTCAGCTAATAAATAAACAATCTTATCTTTGCATTTGATAGATGTTCCAGATTGTTTGACTGCTGGGTTTAAGTGCCATAGCTTTTGAGGATTTTGAATGGCATTGTCAACAAGGGATCTAGTTTCAAATGCCAGTGTAGTAAGAATTGGTTGATATAATTACCGATTAATCTCCTGGAGATAGATTTATGTTTTATTTAGGCAACGTGTCTCTGGAAATCTCTTTCAGCTAATAAATAAACAATTTTATCTTTGCATTTAAGACGTTCTATATTGTTTGACTGCTGGGTTTAAGTGCCTTCAGCTAATAAATAAACAATTTTA

Fln Alignment:

sp_v1.1_unigene8236___MIGPRRPLFVLFGSSIVQYSFANGGWGAHLADIYARKADILVRGYSSWNSRRALQVLDQIFPKGDSQQPSLIIVYFGGNDSMGPHPSGLGPHVPLSEYIDNMRKIATYLKALSESTRLIFLSCPPVNEDMLNTD-SRILSTIARTNELSRHYSEACIELCKEMGLKVVDLWSAIQTRPDWRTSCFTDGIHFSAEGSIIVVEEILKVLKEAEWEPSLHWKNIPTEFGESSPYDVVASDNKSTINVSEFTFHREKQWD
B8LNG4______________MVGPRRPLFVLFGSSIVQYSFANGGWGAALADIYARKADILVRGYSAWNSRRALQVIDQIFPKDAIEQPSLIIVYFGGNDSVGPHTSGLGPHVPLSEYIDNMRKIATYLKELSESTRLIFLSCPPINEDMLNNDSSSILSPIVRTNEASRHYSEACIEVCKDMDLKVVDLWSAIQTRPDWRTSCFTDGIHFSAEGSVIVVEEILKVLKEAEWEPSLHWKSIPAEFGESSPYDVVASDNKSTVNVSEFTFHREKQWD

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
3	66			33	0.997452
4		33		66	0.997452
6			66	33	0.997452
10		33	66		0.997452
11		33	66		0.997452
12			66	33	0.997452
14	66		33		0.997452
16		33		66	0.997452
20		33		66	0.997452
22	66	33			0.997452
24		33		66	0.997452
25	33			66	0.997452
201			80	20	0.995493
202	80			20	0.995493
206		80	20		0.995493
366	66		33		0.997452
367		66	33		0.997452
368	20		40	40	1.0
369		40	40	20	1.0
370	80		20		0.995493
372			20	80	0.995493
443		20		80	0.995493
952	92			7	0.999602
959	7		92		0.999602
1057		14	85		1.0
1250	10		90		0.90298
1606	12		87		0.992554
1621	12			87	0.992554
1646		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
333	344	TA TA TA TA TA TA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain