SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8227

Length: 1396 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8227

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=2 Tax=Populus trichocarpa RepID=B9HJW6_POPTR	-	-	68%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	lipoxygenase	-	-	79%

Source	InterPros	Term	Type	Identity
Blast2go	Lipoxygenase	IPR000907	-	79%
Blast2go	Lipoxygenase, plant	IPR001246	-	79%
Blast2go	Lipoxygenase, C-terminal	IPR013819	-	79%
Blast2go	Lipoxygenase, iron binding site	IPR020833	-	79%
Blast2go	Lipoxygenase, conserved site	IPR020834	-	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLK5

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 464 - 930

Fln protein: EEFARQMLAGVDPVIIQRLQSFPPRSKLDPGIYGPQISSITASHIQKNLDGLTVEQGMEDNRLFILDHHDVFMPYVNRINALPTTKIYASRTILFLKKDGTLRPVAIELSLPPSRQRRESVQEVFTPAEEGAQGALWQLAKCYVAVNDSGYHQLISHWLNTHAVTEPFVIATNRQLSVMHPVYKLLSPHFRDTMNINALARQILINGGGILETTVFPGKYTMEMSAVAYKDWRFDEQGLPADLLKRGMAVVDSSMPHGLKLIIEDYPYAVDGLEIWFAIVSWVKEYLSLYYQNDDAVKSDRELQAWWTEIRNVGHGDKKDETWWYSMDNVEDVEKAITTIIWVASALHAAVNFGQYPYAGYMPNRPTISRRLIPEEGSEEFSELVQNPDLFLLRTISNQFETTLGIALIEILSTHSTDEVYLGQRATSEWSEAERVTEAFERFGMKLKELEKNIRERNEDAEKL

Protein Length: 465

Fln nts: ACGAAGAGTTTGCGCGCCAGATGCTGGCCGGTGTCGATCCTGTTATTATACAGAGACTTCAAAGTTTTCCTCCGAGAAGCAAACTGGACCCAGGGATATATGGTCCTCAGATCAGTTCTATTACGGCTTCACATATACAAAAGAATCTCGATGGTCTCACAGTGGAGCAGGGTATGGAGGACAACAGGTTGTTCATTCTGGACCACCATGATGTCTTCATGCCTTATGTGAACCGAATCAACGCTCTGCCTACCACTAAGATATATGCTTCTCGCACAATTCTGTTCCTTAAGAAGGATGGCACATTAAGACCAGTCGCAATCGAGCTGAGCCTACCCCCTTCACGTCAACGCCGCGAAAGCGTTCAGGAGGTGTTCACTCCTGCAGAGGAAGGCGCACAAGGAGCTCTATGGCAGCTCGCCAAATGCTACGTAGCCGTTAATGATTCTGGTTACCATCAGCTTATCAGTCACTGGCTTAATACTCACGCAGTAACGGAGCCATTCGTCATCGCCACCAACAGACAGCTGAGTGTGATGCATCCCGTGTATAAGCTACTGAGTCCCCATTTCCGAGACACCATGAACATCAACGCTCTGGCTCGCCAAATTCTTATAAATGGCGGAGGCATTCTTGAAACAACAGTATTTCCTGGAAAGTATACCATGGAGATGTCCGCAGTAGCATACAAGGACTGGAGGTTTGACGAACAAGGGTTGCCTGCAGATCTTCTCAAAAGGGGTATGGCAGTGGTGGACTCATCAATGCCCCACGGGCTTAAGCTGATAATCGAAGACTACCCTTATGCTGTGGATGGATTGGAGATATGGTTCGCAATAGTGTCATGGGTTAAGGAGTACCTGTCCTTGTACTATCAGAACGATGATGCAGTGAAATCTGATAGGGAGCTTCAAGCATGGTGGACCGAAATCAGAAATGTGGGTCACGGAGACAAGAAGGACGAGACATGGTGGTACAGCATGGACAACGTGGAAGATGTTGAAAAGGCAATAACAACAATCATATGGGTGGCCTCTGCTCTTCACGCTGCAGTTAATTTCGGGCAATACCCATACGCAGGATACATGCCAAATCGGCCCACCATCAGCAGAAGGTTAATTCCGGAAGAAGGGTCTGAAGAATTCTCAGAGCTGGTGCAGAATCCGGACTTGTTTTTGCTGAGAACGATAAGCAACCAATTTGAAACGACACTGGGCATAGCGTTGATAGAAATTCTGTCCACGCACTCCACAGACGAAGTATATCTAGGACAAAGAGCCACGAGTGAATGGAGTGAGGCTGAACGTGTAACAGAAGCTTTTGAACGCTTCGGTATGAAGCTGAAAGAGCTTGAGAAAAATATAAGAGAGAGAAACGAAGATGCAGAAAAGTTGAA

Fln Alignment:

sp_v1.1_unigene8227___EFARQMLAGVDPVIIQRLQSFPPRSKLDPGIYGPQISSITASHIQKNLDGLTVEQGMEDNRLFILDHHDVFMPYVNRINALPT--TKIYASRTILFLKKDGTLRPVAIELSLPPSRQRRESVQEVFTPAEEGAQ-GALWQLAKCYVAVNDSGYHQLISHWLNTHAVTEPFVIATNRQLSVMHPVYKLLSPHFRDTMNINALARQILINGGGILETTVFPGKYTMEMSAVAYKDWRFDEQGLPADLLKRGMAVVDSSMPHGLKLIIEDYPYAVDGLEIWFAIVSWVKEYLSLYYQNDDAVKSDRELQAWWTEIRNVGHGDKKDE-TWWYSMDNVEDVEKAITTIIWVASALHAAVNFGQYPYAGYMPNRPTISRRLIPEEGSEEFSELVQNPDLFLLRTISNQFETTLGIALIEILSTHSTDEVYLGQ--RATSEWSEAERVTEAFERFGMKLKELEKNIRERNED
B8LLK5______________EFARQALAGVNPLVIRCLETFPPSSSLDPNLYGPQKSTITEQHIKKFLDGLSLSQAVGSKRLFILDYYDPYMLYAERINKLSSDANKTYASRTLFFLTDEGELKPVAIELCLPPTADHK-AVRSVYTPGEEGTEEGALWRLARAHARVNDSGYHQLISHWLTTHAIMEPFIIATHRQLSKMHPLYKLLIPHYLNTMDINQAARQSLINADGVIELGFTPGKYSTEMSSKIYKEWKFNEQGLPADLLKRGMAVRNPTSPYGLKLVIEDYPYAVDGLEIWLSLKEWVSDYLSLYYKDDASIKRDQELQAWWNEIVNVGHGDLKDDPSRWYKMETKEEVVEAVTTIIWIASAHHAAVNFGQYSYGGYMPNLPTMSRRLIPEKGSEEYSEMLRDVDAYFLRTVSTPRQATLIMAVLEILSQHAKHEVYIGQIHGSTPDWVDDSGVEEAFNRFSSRLVQLEKNVIDRNNN

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
502		66		33	0.997452
594		33		66	0.997452
624		33		66	0.997452
641		75	25		0.996473
648	75		25		0.996473
664	66		33		0.997452
665		33	66		0.997452
678		33		66	0.997452
681	66		33		0.997452
687	33		66		0.997452
1266		84		15	0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain