SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8224

Length: 1485 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8224 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F/Y-rich N-terminus family protein	-	-	3.0e-23	39%
FL-Next	sp=Histone-lysine N-methyltransferase ATX1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	26%
Blast2go	protein	-	-	0.0	58%

Source	InterPros	Term	Type	Identity
Blast2go	FY-rich, N-terminal	IPR003888	-	58%
Blast2go	FY-rich, C-terminal	IPR003889	-	58%
Blast2go	FY-rich, C-terminal subgroup	IPR018516	-	58%
Blast2go	FY-rich, N-terminal subgroup	IPR018518	-	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C5X4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 124 aas, your sequence is shorter than subject: 253 - 1062

Fln protein: ILPLALTERLTIVDLGTIEYKRAGFHTDRHIFPIGYKSIRNYASMVEKDGRTTYTCTILDGGSAGPIFRVVPEDSPEKVIERDSASGAWAVVCGTGNKMRGIERGKITISGTEMFGLSHPTVIQLLRELPGAEYCSTFFSDYPTFGSHSRRQSISTPVIPSVQDGSEFRDTEVKQKPMSSFGDQSEQSSSDSSEETDSSDSSDEVDGSYQGVTSDKMAEDQSFTRRNMLVHSGNRERTYLDINADPEELESP*

Protein Length: 254

Fln nts: CTATTCTTCCACTTGCTCTAACAGAACGTCTTACCATTGTGGATCTTGGGACGATTGAATATAAACGTGCGGGATTTCATACAGACCGACACATATTCCCTATTGGCTATAAATCTATAAGAAACTATGCCAGCATGGTGGAAAAGGATGGACGGACTACATACACCTGTACAATTCTTGACGGTGGAAGTGCAGGTCCTATTTTTCGTGTAGTTCCAGAAGACAGCCCTGAAAAAGTCATTGAAAGGGATTCTGCATCTGGTGCATGGGCTGTTGTTTGTGGAACTGGCAACAAGATGCGTGGAATTGAACGCGGCAAGATCACCATCAGCGGGACGGAGATGTTCGGCCTCTCACATCCTACAGTTATTCAATTATTACGTGAGCTGCCTGGAGCAGAGTACTGTTCTACCTTCTTCTCTGACTATCCCACTTTTGGATCTCACTCTCGAAGACAATCAATTAGTACCCCAGTTATTCCTTCCGTTCAAGATGGTTCCGAATTCAGAGATACCGAGGTGAAGCAAAAGCCAATGAGTAGCTTTGGAGATCAATCAGAGCAATCATCATCTGACTCATCTGAAGAAACAGACAGCAGCGATTCATCTGATGAAGTGGATGGTTCTTATCAGGGTGTCACTTCAGATAAGATGGCTGAAGATCAAAGTTTCACTAGAAGAAACATGTTAGTTCATTCAGGTAATAGGGAAAGAACTTATCTTGACATAAATGCAGACCCAGAGGAGCTTGAATCACCATAAACATATAAATATATAGTACAAGGAAAAGTTTTCAAACCAGACTTGTGCTATGGGTTGATAGTTCAGGGGTGAACAAGCTTCATTGATGTTCCTTTAAGATGGCAGGATGTGGTTTTTGGTCTGGCTTACTTGTCACCATGATATTATAGTCTTGGATGTATACTACGACATATTAGAGTCTTGTAGAAGATTCAATTTCATTGTCAAAATTAGAGCACATCTGTATCTTGGAAATCAGAATGTGTCCAGTTATTATTTGATTTTCATTCAGGTGCTGTTTCCTGATTTAGTTTTATGGCGAATTTTCCAGACGGCTAGAGTGTTTGGAAGTGAGAGTATGGGGAATTCTTTGAATACCAGTGTGATAATTTAGGATCATTGCCTATGGCTAACAGGACCTTGATGTGACTTTCATTCAAGCATTGGGGGATTGGACGTGACTTATAAAACCGAACCAGATAACTAGTCATCACCCTGAAAATTCTCTTTGGGTGGTGGTGCTTATTGTTTATGGAGATTTCTACTAATGATATATCTAATCTGTGCTCTGAAGATTCATTCTAAACAGGTGTTAGAAACTGTGGGGAAACTTTCAACTGATTTCTCGCATATCTAAAGAGATTTTAGCAGTAAGCATGATTTTTTGACTTCCAGGCCATGTTTAAGGTCATTGAATTTGACCTGAGAATTGGTTTTTTTATATTTTTAGTTGCACCACTATGAT

Fln Alignment:

sp_v1.1_unigene8224___LTIVDLGTIEYKRAGFHTDRHIFPIGYKSIRNYASMVEKDGRTTYTCTILDGG--SAGPIFRVVPEDSPEKVIERDSASGAWAVVCGTGNKMRGIERGKI-----TISGTEMFGLSHPTVIQLLRELPGAEYCSTFFSDYPTFGSHSRRQSISTPV
Q9C5X4______________LLIINLGKVVTDSQFFKDENHIWPEGYTAMRKFTSLTDHSASALYKMEVLRDAETKTHPLF-IVTADSGEQ-FKGPTPSACWNKIYNRIKKVQNSDSPNILGEELNGSGTDMFGLSNPEVIKLVQDLSKSRPSSHVSMCKNSLGRHQNQPTGYRPV

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
242	75	25			0.996473
1248	16		83		0.994512
1249			20	20	0.99255
1250	20			20	0.99255
1274	75		25		0.996473
1297		80		20	0.995493
1343		80		20	0.995493
1355	40		60		1.0
1378		20		80	0.995493
1447		85	14		0.993533
1452	85		14		0.993533
1462	16		83		0.994512
1464	16			83	0.994512
1465		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain