SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8223

Length: 1890 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8223

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 3 n=8 Tax=rosids RepID=A0MNJ1_POPTR	-	-	57%
FL-Next	sp=CBL-interacting serine/threonine-protein kinase 26; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	protein	-	-	72%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	72%
Blast2go	Kinase-associated KA1	IPR001772	-	72%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	72%
Blast2go	NAF domain	IPR004041	-	72%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	72%
Blast2go	Protein kinase-like domain	IPR011009	-	72%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	72%
Blast2go	NAF/FISL domain	IPR018451	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q84VQ3

Fln msg: Separated hits, possible frame ERROR between 443 and 445,

Fln protein: MKLHNRIGKYELGRILGEGNFAKVKYAIDVETRKSYAVKILDKDTVFHYNIVDQIKREICSMKLIKHPNVVRLYExxLASKKKIYIVLEFVKGGELMDKILYSDKLDGSEVRKYFQQLIDAVGYCHSRGVYHRDLKPENLLLDAKGNVKISDFGLSALPEQFRADGLLHTTCGSPSYVAPEVIANKGYDGATADVWSCGVILFLLLTGWLPFEDENLAALYQKICKSDFQCPKWLSAGARKLLKRILDPNPKTRITIGEIMKDEWFKQGYSPAKVVEEDTSFDDVAVAFTKSQEHMVREETGPVLMNAFQLIAMSGSLDLSGLFEEEDAAERKTRFTSMLPAQEIIHKIQETVETMGFQVKSKNSKLKLVHADPKSKGRNGHLCVTTEVFKVTACLHMVEIRKYSGNITQYRELCRKLSSDLGFQPEVWRESGIPGCKVV*

Protein Length: 442

Fln nts: ATGGGGCTCTGAAATTCGGGTTGCTCCTTCTGCTTATAAGCCCAAATTCAACTCGAGCGGCACTGAGATTGGGTTTTCTAATCTGGAATTTCCCAACTCTGCTCAGACTGACAATTCGTGCAGAATATAGATTATTAACCAGCGGGAATTCACCCTTCAGCTTTACAAGCGATCGGCGACTCAGGGCATTTAGCTTGAAAGGCAGAATTGTGAGA_-_ATGAAGCTGCATAACCGGATCGGAAAGTATGAGTTAGGACGGATTCTCGGAGAGGGGAATTTCGCCAAAGTTAAGTACGCCATTGATGTGGAAACAAGGAAAAGCTATGCCGTCAAAATTTTGGACAAGGACACAGTTTTTCACTACAACATCGTCGACCAGATCAAGCGTGAAATATGCAGTATGAAGCTCATCAAACATCCGAACGTTGTGAGATTATACGAGGTxxxTTTGGCGAGTAAGAAGAAAATATATATTGTTCTTGAATTTGTCAAGGGAGGTGAATTGATGGACAAAATTTTGTATAGTGACAAGCTGGACGGAAGCGAAGTGAGAAAGTATTTTCAGCAGCTTATTGATGCCGTAGGATATTGTCACAGCAGGGGTGTTTATCACAGAGATTTGAAGCCGGAGAATCTTCTGCTGGATGCAAAAGGAAATGTGAAGATATCTGACTTCGGCCTCAGCGCGCTTCCAGAGCAATTTAGGGCAGACGGGTTGTTGCATACCACTTGTGGGAGCCCCAGTTACGTGGCACCCGAGGTGATTGCTAACAAAGGATACGATGGTGCTACTGCTGATGTTTGGTCTTGTGGGGTCATTCTATTTCTTCTTTTGACTGGCTGGCTGCCATTCGAAGACGAAAATCTTGCAGCTCTGTATCAGAAGATCTGCAAAAGCGATTTCCAGTGTCCAAAATGGCTATCTGCAGGCGCTCGCAAATTGCTCAAACGAATACTTGATCCCAATCCGAAGACACGCATAACTATAGGTGAAATAATGAAAGATGAGTGGTTTAAGCAAGGCTATTCCCCAGCGAAAGTTGTGGAGGAGGACACTTCCTTCGATGATGTGGCTGTTGCATTTACAAAGTCGCAGGAACATATGGTGAGGGAGGAAACGGGGCCGGTTCTCATGAACGCTTTTCAGTTAATAGCAATGTCAGGGAGCCTGGACCTCTCCGGTTTATTTGAAGAAGAGGATGCCGCCGAAAGGAAGACGAGATTCACATCCATGTTACCGGCCCAGGAGATTATACACAAAATCCAAGAAACGGTCGAAACCATGGGGTTTCAGGTCAAGAGCAAGAATAGCAAGCTAAAATTGGTACATGCGGATCCTAAATCGAAAGGGAGAAATGGACATCTTTGCGTGACAACGGAGGTGTTCAAGGTCACAGCCTGTTTGCACATGGTAGAGATCAGAAAATACTCCGGAAACATAACACAGTACAGAGAGTTGTGCAGAAAGTTATCAAGTGATCTTGGCTTCCAACCTGAAGTGTGGAGGGAGAGTGGCATTCCTGGTTGTAAAGTTGTGTAA___GAATTAAAGTGTGATGAAGATAAAAAAATGGTGTTCGAACTGGATTCCGAGTGAGGTTTTCATGGTGAAACACTGGAATTAGTTTTTAATATTCTTACTTTTATACATCTGAGATGGCGTATGAAACGACCTATGATCTTCCACAAAGAGGAAGCAACTACTCACTTAGCATTAGAGCATCTATACGGGCAGTGAAAATTTATTATGGTTTTGTGGAAGCAACTACTTAGCATTGAGCATCTATTTTGGGAGTAGAAATTTATTGTGGTGGTGTGGTACTTGGTGAAGTGCACAGTGGTCTTCCATATCATCGACAGGAGTGCAAAACGAGCTGCAAGAACCCAACATTGCTGA

Fln Alignment:

sp_v1.1_unigene8223___RMKLHNRIGKYELGRILGEGNFAKVKYAIDVETRKSYAVKILDKDTVFHYNIVDQIKREICSMKLIKHPNVVRLYEVxLASKKKIYIVLEFVKGGELMDKILYSDKLDGSEVRKYFQQLIDAVGYCHSRGVYHRDLKPENLLLDAKGNVKISDFGLSALPEQFRADGLLHTTCGSPSYVAPEVIANKGYDGATADVWSCGVILFLLLTGWLPFEDENLAALYQKICKSDFQCPKWLSAGARKLLKRILDPNPKTRITIGEIMKDEWFKQGYSPAKVVE-EDTSFDDVAVAFTKSQEHMVRE--ETGPVLMNAFQLIAMSGSLDLSGLFEEEDAAERKTRFTSMLPAQEIIHKIQETVETMGFQVKSKNSKLKLVHADPKSKGRNGHLCVTTEVFKVTACLHMVEIRKYSGNITQYRELCRKLSSDLGFQPEVWRESGIPG
Q84VQ3______________RPKVQRRVGKYEVGKTLGQGTFAKVRCAVNTETGERVALKILDKEKVLKHKMAEQIRREICTMKLINHPNVVRLYEVxLASKTKIYIVLEFGTGGELFDKIVHDGRLKEENARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDAQGNLKVSDFGLSALSRQVRGDGLLHTACGTPNYAAPEVLNDQGYDGATADLWSCGVILFVLLAGYLPFEDSNLMTLYKKIIAGEYHCPPWLSPGAKNLIVRILDPNPMTRITIPEVLGDAWFKKNYKPAVFEEKEEANLDDVDAVFKDSEEHHVTEKKEEQPTSMNAFELISMSRALDLGNLFEEEEGFKRETRFAAKGAANDLVQKIEEASKPLGFDIQKKNYKMRLENV---TAGRKGNLRVATEIFQVSPSLHMIEVRKTKGDTLEFHKFYKKLSTSL--NDVVWKSGESSG

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
341		66		33	0.997452
380		66		33	0.997452
413	66		33		0.997452
422		66		33	0.997452
779	80	20			0.995493
784			20	80	0.995493
786			80	20	0.995493
788			80	20	0.995493
790		20		80	0.995493
791	80	20			0.995493
794			80	20	0.995493
795		80		20	0.995493
797		25	75		0.996473
798	75	25			0.996473
1325	16		83		0.994512
1370		83		16	0.994512
1456	80	20			0.999996
1459		20		80	0.999996
1463	20	80			0.999996
1464	80	20			0.999996
1465		20	80		0.999996
1466	80			20	0.999996
1467	77			22	0.999999
1468	77		22		0.999999
1470		22		77	0.999999
1472	77		22		0.999999
1476	77			22	0.999999
1477		22	77		0.999999
1478	22			77	0.999999
1569	85		14		0.993533
1570	11			88	0.923564
1571		11	88		0.923564
1572			88	11	0.923564
1573		11		88	0.923564
1574	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain