SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8186

Length: 1269 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8186

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	21 kD protein n=1 Tax=Pinus radiata RepID=O65011_PINRA	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	21 kda protein	-	-	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPS0

Fln msg:

Fln protein: MAFSATILSVLVIAACLGSTAATKVLNPVHSNTHIVEFIRTSCNVTLYPQVCVSSLSSYAGSLKATQSNLVNAALQVSLVNVHNVSLWATGLKRRGATMSKRERAALGDCIENFGDTTDQIRQSLAELKNLRRNTFKFQMSNVETWMSAALTNEDSCLDGFQVARGMVKAMVTGRVQNVCKLISNALALLNKFAATEGGY*

Protein Length: 202

Fln nts: ATTGGGTAGTTCCCCGCTCTATCGTTAAAGTCCCCTGACATTAATCAAAATATTATCAAATATAGCGCCATCGGCGGCAACGATCACGTGGAGCAGTCGAATATTGAACAATTCCCAACAGCGGTGCCGACTCCCTATTTATGGCATAACAGGGGAGAGGAGAGCAGAAACCCTTCCAAGTATACGTCTCAGGGTCGAATCGCC_-_ATGGCTTTCTCAGCCACTATTTTATCTGTTCTTGTAATTGCTGCGTGCCTGGGCTCAACGGCAGCAACGAAGGTCCTGAATCCTGTGCACAGCAACACACACATTGTGGAATTTATCAGAACTTCGTGCAATGTGACTCTGTATCCGCAAGTCTGCGTTTCGTCGCTCTCTTCCTACGCGGGGTCTCTGAAGGCCACGCAGAGCAATCTGGTGAATGCGGCCCTGCAGGTGAGCCTCGTTAATGTCCACAACGTGTCCCTCTGGGCCACGGGTTTGAAACGCAGAGGGGCTACGATGAGTAAAAGGGAAAGAGCGGCGCTCGGGGATTGTATTGAAAATTTCGGCGACACCACGGACCAGATTCGCCAATCTCTGGCGGAGCTAAAAAACCTGCGGCGGAACACGTTCAAGTTTCAGATGAGCAACGTGGAGACGTGGATGAGCGCCGCGCTCACCAACGAGGACTCCTGCCTCGACGGCTTTCAAGTTGCCAGAGGGATGGTTAAGGCCATGGTCACGGGCCGCGTGCAGAATGTGTGCAAATTGATCAGCAATGCCCTCGCTCTCCTCAACAAATTCGCTGCCACCGAAGGAGGATATTAG___ATCGGTGTCTGTCACTAAAAGCCTGCAAGATATTTTGATATGTTTTGAATATTCAATGTATTCTGTATATAATAACTCCTCTTTTGCTTTCTATGGCTCTGGCATTAAAGCCAAATCTAGGGTTTTCTTGGGCTGTACACTTTGTAACACGGCGTGTAGAGTATTCAGGAGGTTTCTGTAAGGAAAAAGATTGGAGATTCAGAGTCCGCTGAAGTATTGAGGAAGGTTTGTAATTGTAAAACAATAATATTCGACTTTTCTAAAGTTCTAACCTTTGTCTGCCTATTGATTTTGATGGTCTAACCTCAAATTTTCTTATTTGCATTGTTATCCTCTGCAAAATTGGGGATCAATATAGATGTTGTCTCGTTTGGGTTGAACTACTTATTGAATAAGATTGCTTGCGTAATATGTGGCGAATCAGCAATTGATATCAAAGTTCAGGGAATGAACAAATATCAT

Fln Alignment:

sp_v1.1_unigene8186___MAFSATILSVLVIAACLGSTAATKVLNPVHSNTHIVEFIRTSCNVTLYPQVCVSSLSSYAGSLKATQSNLVNAALQVSLVNVHNVSLWATGLKRRGATMSKRERAALGDCIENFGDTTDQIRQSLAELKNLRRNTFKFQMSNVETWMSAALTNEDSCLDGFQVARGMVKAMVTGRVQNVCKLISNALALLNKFAATEGGY*IGV
A9NPS0______________MASSATIFSVVVIAACLGSAAATKPLNPVHSNTHIVEFIKTSCNVTLYPQLCVSSLSSYAGSLKATQSNLVNVALQVSLVTARNVSVWAAGMKSRRALMSRRERAALGDCIEDFGDTADQIRQSLAELKKLRRNTFKFQMSNVETWMSAALTNEDSCLDGFQVAKGRVKAMVTGRVQKVCKMISNALALLNKFAATEGEYEIDV

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
191		83	16		0.994512
203	50		50		1.0
214	16	83			0.994512
229	50			50	1.0
245	50		50		1.0
252			83	16	0.994512
259		50		50	1.0
276	85	14			0.993533
279		42		57	1.0
301		87	12		0.992554
318	37			62	1.0
337			37	62	1.0
355	70		30		1.0
428		77		22	0.999999
452	16	83			0.999991
455	73		26		1.0
456	73		6	20	1.0
460		13	86		0.999973
461	20			80	1.0
464		80		20	1.0
469		6	80	13	0.999961
470	6	13	80		0.999961
471	13	86			0.999973
473	86			13	0.999973
484	80		13		0.999961
506	87	12			0.999964
507	86		13		0.999973
508	86			13	0.999973
509	86	13			0.999973
511			86	13	0.999973
514	85	14			0.999981
515	85			14	0.999981
516			85	14	0.999981
517	85		14		0.999981
521			85	14	0.999981
523	14		85		0.999981
673		83		16	1.0
802	90		10		0.90298
820	10			90	0.90298
823		90	10		0.90298
825	90		10		0.90298
827	90	10			0.90298
828	90		10		0.90298
834		87	12		0.992554
840	87	12			0.992554
935	15	84			0.999986
961		84		15	0.999986
1020	48		51		1.0
1069		10		90	0.999898
1080		75		25	1.0
1164			81	18	0.999994
1213	20	80			0.995493
1229	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain