SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8183

Length: 1909 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8183

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dihydroflavonol 4-reductase n=3 Tax=Camellia sinensis RepID=Q672G0_CAMSI	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	dihydroflavonol 4-reductase	-	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVE3

Fln msg:

Fln protein: MLGSSTQPYTTVLQRHRFTYSSAVVLCDKSLETNYKFVRSSVSFRSRAEKTSSRHFGNLARRLIQDPAMAFGEEQIALPQETPLNPPVHRGTVCVTGAAGFIGSWLIMRLLERGYSVRATVRDTGNPVKTKHLLDLPGANERLTLWKADLDDEGSFDAAIDGCEGVFHVATPMDFESEDPENEIIKPTINGVLNVMRSCAKAKSVKRVVFTSSAGTVNFTDDFQTPGKVFDESCWTNVDLCRKVKMTGWMYFVSKTLAEKAAWDFAEENKIDLITVIPTLVVGPFIMQTMPPSMITALALLTRNEPHYMILRQVQLVHLDDLCMSHIFVYEHPEAKGRYISSTCDATIVQVAKMLAQKYPEYNVPTTFKDADESLPAVPFSSKKLLDLGFKFKYTQEEMFDGAIQCCREKGLLPEKASF*

Protein Length: 421

Fln nts: ATGGGGCTCCCAACTACACACGTAAATGCGTGCACAGCCTCCCCTCGATCTCATTTTCCTCTCCTACCTTTCGTCGATATATTCAGTGTTGTGATGCACATTCCGCCGTTATGTATTCACTGGAGAATCATGCCTAACCAGGGCATGTCAATCTAGA_-_ATGTTAGGTAGCTCAACGCAGCCATATACCACAGTCCTCCAACGACACCGTTTTACCTACTCTTCTGCTGTTGTTCTCTGTGACAAGTCGCTGGAGACGAACTATAAATTCGTACGATCTTCCGTGAGTTTCAGAAGCCGGGCCGAGAAAACATCATCCAGGCATTTTGGAAATTTAGCTCGCCGGTTGATTCAGGATCCTGCAATGGCTTTTGGCGAAGAGCAGATTGCCTTACCACAAGAAACGCCTTTGAATCCTCCGGTCCATCGAGGAACAGTGTGCGTCACAGGAGCTGCTGGGTTCATAGGGTCATGGCTCATCATGCGATTGCTTGAGCGAGGATATAGTGTTAGAGCAACTGTGCGAGACACTGGTAATCCTGTAAAGACAAAGCATCTGTTGGATCTACCCGGGGCAAATGAGAGATTGACTCTCTGGAAAGCAGATTTGGATGATGAAGGAAGCTTTGATGCTGCCATTGATGGGTGTGAGGGTGTTTTTCATGTTGCCACTCCCATGGATTTCGAGTCCGAGGATCCCGAGAATGAGATAATTAAGCCAACAATCAATGGGGTCTTGAATGTTATGAGATCGTGTGCAAAAGCCAAGTCCGTGAAGCGAGTTGTTTTCACGTCATCTGCTGGGACTGTGAATTTTACAGATGATTTCCAAACACCAGGCAAAGTTTTTGACGAATCATGCTGGACCAACGTGGATCTTTGCAGGAAAGTTAAAATGACAGGATGGATGTACTTTGTATCCAAGACATTAGCAGAGAAAGCTGCTTGGGATTTTGCAGAGGAGAACAAGATCGATCTCATTACTGTTATCCCCACATTGGTCGTTGGGCCATTCATTATGCAGACCATGCCACCGAGCATGATCACAGCCTTGGCACTGTTAACGCGGAATGAACCTCATTACATGATACTGAGACAGGTACAGCTGGTTCACTTGGATGATCTCTGTATGTCACATATCTTTGTATATGAACATCCTGAAGCAAAGGGCAGATACATCTCTTCCACATGTGATGCCACCATTGTCCAAGTAGCCAAGATGCTGGCTCAGAAATACCCAGAGTACAATGTACCAACCACGTTCAAGGATGCGGATGAGTCCCTGCCGGCCGTGCCATTTTCGTCAAAGAAGCTCCTTGATTTGGGCTTCAAGTTCAAGTACACACAGGAAGAGATGTTTGATGGGGCCATTCAGTGCTGCAGGGAGAAAGGATTGCTGCCTGAGAAAGCATCTTTCTGA___TAAAGTATCTTCTGATGCAGCATACACACACCGTTGGCATGTGTGGTTTGTGTAGACATGGTGGCGGTGGAGAAATAATGGAATGAATTTGGTTTCTAGAAAACAACAGGAATTACAGCTTGCAAGAGTGACTTATGTGACATGATACAGAAATAAGAGGAATACCGGCTGACCGCTGTTGTTTATTAATGCGAATTTTATTGACCTTGACAAGGTCATACCAGGGCTCCTGGAATGCTACATCTGTACTTCTGATTCTGGCTCCAGTAATTTAAATTTTTCAAATTCTGCAATACCCAGCAGTTTTACAAATATTGTGTTTCTGCCCTTAAGTTCCACAAGAAAGACCTTCAAAATATTTCGGACAAATTGATGACCCAAAAAGATTCCTGTCCACACACGGCTTCAACTGGTACCACAAATCCTCAAAAATAACATTTTATTATAATTCTTTTAATGACAATTACAAAGTCACATACTTCGACATTTTCC

Fln Alignment:

sp_v1.1_unigene8183___MLGSSTQPYTTVLQRHRFTYSSAVVLCDKSLETNYKXXXXXXXXXXXAEKTSSRHFGNLARRLIQDPAMAFGEEQIALPQETPLNPPVHRGTVCVTGAAGFIGSWLIMRLLERGYSVRATVRDTGNPVKTKHLLDLPGANERLTLWKADLDDEGSFDAAIDGCEGVFHVATPMDFESEDPENEIIKPTINGVLNVMRSCAKAKSVKRVVFTSSAGTVNFTDDFQTPGKVFDESCWTNVDLCRKVKMTGWMYFVSKTLAEKAAWDFAEENKIDLITVIPTLVVGPFIMQTMPPSMITALALLTRNEPHYMILRQVQLVHLDDLCMSHIFVYEHPEAKGRYISSTCDATIVQVAKMLAQKYPEYNVPTTFKDADESLPAVPFSSKKLLDLGFKFKYTQEEMFDGAIQCCREKGLLPEKASF
A9NVE3______________MLGSLTKPHITVFQRHRFTYSSAIILYDKSLETHNKSRRSSLVFRSRAEKTSSKRFGIFARRLIKDPAMAFGEEKNPLPQETPLNPQLHRGTVCVTGAAGFIGSWLIMRLLERGYTVRATVRDTGKPLKTKHLLDLPGANERLTLWKADLDDEGSFDAAVDGCEGVFHVATPMDFESEDPENDIIKPTVNGVLNVMKSCAKAKSVKRVVFTSSAGTVNFTDDFQTPGKVFDESCWTNVDLCRKVKMTGWMYFVSKTLAEKAAWDFAEENKIDLLTVIPTLVVGPFIMQTMPPSMITALALLTRNEPHYMILRQVQLVHLDDLCMSHIFVYEHPEAKGRYISSTCDATIVQVAKMLAQKYPEYNVPTKFKDADESLPAVPFSSKKLLDLGFKFNYTMEEMFDGAIQCCREKGLLPEKASF

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
36	75		25		0.996473
67	25	75			0.996473
77	40	20	40		1.0
185	88		11		0.923564
251	11		88		0.923564
289		87	12		0.992554
907		4		95	0.997494
1322	80		20		0.999996
1645		91		8	1.0
1664	6		93		0.999153
1710	85		14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain