SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8181

Length: 1079 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8181

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	universal stress protein (USP) family protein	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	universal stress protein family protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Blast2go	Universal stress protein A	IPR006015	-	76%
Blast2go	UspA	IPR006016	-	76%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	76%

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
230	25			75	0.996473
252	75	25			0.996473
262		75		25	0.996473
264			25	75	0.996473
326	75		25		0.996473
331			25	75	0.996473
349			75	25	0.996473
356		25		75	0.996473
379			75	25	0.996473
385		20	80		0.995493
388	80	20			0.995493
390		75		25	0.996473
391			25	75	0.996473
392	33	66			0.997452
397		66	33		0.997452
398		66	33		0.997452
404		33	66		0.997452
422		66		33	0.997452
483		33		66	0.997452
559		33		66	1.0
576	33		66		0.997452
784	20			70	1.0
834	18		81		1.0
835	81	18			1.0
852		18		81	1.0
855		18		81	1.0
880		72		27	1.0
891			33	66	1.0
929		62	37		1.0
939		68		31	1.0
944	70		29		1.0
961		51	48		1.0
967	29		70		1.0
1003	30			70	1.0
1023	22	77			0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain