SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8163

Length: 1217 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8163

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acid phosphatase (Fragment) n=1 Tax=Picea abies RepID=B2KZJ5_PICAB	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	acid phosphatase	-	-	73%

Source	InterPros	Term	Type	Identity
Blast2go	Acid phosphatase (Class B)	IPR005519	-	73%
Blast2go	Acid phosphatase, plant	IPR010028	-	73%
Blast2go	Vegetative storage protein/acid phosphatase	IPR014403	-	73%
Blast2go	HAD-like domain	IPR023214	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRU7

Fln msg:

Fln protein: MAFLVLKHNLLLIVLILWYAHLSSAAAERSWKIFHDDEDDWVSEQSTAQKRWELKQERIPQETESYCEAWRFGVETNTLRLWTQVPSDCVEYVQNYMVGSQYSRDLQMVADESIGYASALMASGSGDGMDAWVFDIDETLLSNLPYYVAHQFGGEVFDNSAFNDWVDLAEAPALASSYRLYTHLLELGVKIFLLTGRDETQRNATQKNLVRAGYHTWEALLLRGIDDHGKTAVLYKSEKRLKIEEDGFRIRGNSGDQWSDVCGHATGNRTFKLPNPMYYIA*

Protein Length: 283

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATAAACCCGTCGTGACCTTGGATGCAGTCATTATTATTCTCATTCTTCCATTGGTTTGTCAATCTGTAAAAGTGGAAGGGACATAGGGAGTATTCTACATTTTCCACTTCCAATTTTTATTGAACATTCTTCA_-_ATGGCGTTTCTCGTGCTCAAGCACAACCTCTTGCTCATCGTTCTCATCCTCTGGTACGCCCACCTTTCCTCTGCTGCAGCCGAAAGGTCTTGGAAAATCTTCCATGACGATGAGGATGACTGGGTATCGGAGCAATCCACTGCTCAGAAGAGATGGGAGCTGAAGCAGGAGCGGATCCCCCAAGAAACCGAATCCTATTGCGAAGCGTGGAGATTCGGCGTAGAAACAAACACTTTACGCTTATGGACCCAGGTACCTTCGGATTGCGTGGAATATGTGCAAAACTATATGGTAGGAAGCCAATACTCGAGGGACCTACAGATGGTGGCTGACGAATCAATAGGTTACGCTAGTGCCCTCATGGCCTCGGGCTCAGGCGATGGGATGGACGCCTGGGTATTCGATATTGACGAAACCCTTCTCTCCAATTTGCCCTATTACGTTGCCCATCAGTTTGGAGGTGAGGTGTTTGATAATAGCGCTTTTAACGACTGGGTGGATCTGGCAGAGGCCCCGGCATTGGCCTCTAGCTATAGATTGTACACCCATCTGCTTGAATTGGGGGTGAAGATCTTTTTATTGACCGGTAGGGACGAGACCCAGAGGAATGCCACACAGAAAAATCTGGTCCGAGCTGGTTATCATACATGGGAAGCGCTATTGTTGAGGGGAATAGATGATCATGGGAAGACTGCTGTGCTTTATAAGTCTGAGAAGAGGTTGAAGATTGAAGAGGATGGGTTTAGGATTCGAGGGAACTCTGGTGATCAGTGGAGTGATGTGTGTGGACACGCTACTGGAAACAGAACCTTCAAGCTTCCCAATCCCATGTATTACATTGCCTGA___TTTTAATGTTTACTGTGTTTCATTTTGGCATGGAAAAAACTAGCCAGGCTCTGGAAATTATCATTATGAAAATTTAAAGGGATATCATCATATATTGTTCTTCAAACTCTCAATATTGTCAATCTCACTACTCTCCCTGCCCTGATGGATGATTAAAATGTCATGTAACCTCTCTTACCTGATTTTTTTTCATAAGTGGTTTTTTCTATATC

Fln Alignment:

sp_v1.1_unigene8163___DEDDWVSEQSTAQKRWELKQERIPQETESYCEAWRFGVETNTLRLWTQVPSDCVEYVQNYMVGSQYSRDLQMVADESIGYASALMASGSGDGMDAWVFDIDETLLSNLPYYVAHQFGGEVFDNSAFNDWVDLAEAPALASSYRLYTHLLELGVKIFLLTGRDETQRNATQKNLVRAGYHTWEALLLRGIDDHGKTAVLYKSEKRLKIEEDGFRIRGNSGDQWSDVCGHATGNRTFKLPNPMYYIA
A9NRU7______________DHSDWISEESTALDKWELKQP--PQDPQLNCESWRFGVETNTVRFWSVVPQECVEYVKDYMDGSQYLLDSNVVANVSIAYANSLNLSG--DGKDVWVFDVDETLLSNLPLYAAYNYGGADMDDGAFIKWADLAEAPALPASQRLYAHLLQLGFKIFLLTGRYDYERNATEKNLVQAGYHSWEALLLRGPDDYETTAVVYKSGRRLKIEKDGFRIRGNSGDQWSDLSGYSCGDRTFKLPNPMYFIA

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
56	66			33	0.997452
57		66	33		0.997452
59		33		33	0.997753
60	33	66			0.997452
65	33			66	0.997452
67	66		33		0.997452
68	33			66	0.997452
86	14			85	0.993533
88			14	85	0.993533
90			14	85	0.993533
91		85	14		0.993533
117		22	77		0.999999
119			77	22	0.999999
120	75	25			1.0
124	77		22		0.999999
125	22			77	0.999999
126		22		77	0.999999
129	77			22	0.999999
130		77	22		0.999999
131	77		22		0.999999
132		22		77	0.999999
134			22	77	0.999999
141		11		88	0.923564
142	11	88			0.923564
143	11	77	11		0.968132
337		88		11	0.923564
395	16	83			0.994512
396	83	16			0.994512
446			14	85	0.993533
541		10		90	0.90298
823			92	7	0.999532
824		92	7		0.999532
829		7		92	0.999602
831		7	92		0.999602
832	7			92	0.999664
1167			11	88	0.923564
1169	88		11		0.923564
1171	88	11			0.923564
1173			11	88	0.923564
1175		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain