SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8162

Length: 1532 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8162 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 variant 1C n=3 Tax=Eukaryota RepID=D3PJZ2_9MAXI	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	ubiquitin-conjugating enzyme spm2	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	postreplication repair	GO:0006301	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	UBC13-MMS2 complex	GO:0031372	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	92%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTX0

Fln msg:

Fln protein: MKMGSGGSSVVVPRNFRLLEELERGEKGIGDGSVSYGMDDSDDIYMRSWTGTIIGPHNSVHDGRIYQLKLFCDKDYPEKPPNVGFCSRVNMTCVNQETGRVDPKHFPMLANWRREYTMEDILTHLKREMLASYNRKLVQPPEGTFF*

Protein Length: 148

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGGTGGTGGTATTTGTTTGGCAGAGATTCGGTGGGTGCATGTCTTCATATTCTATTCTCTTTCGCTTTCCCTTCCACCTGCTATTTTAGAGGCCAAAGAATGACAGAGGAGTGTGCCTCTCTGTCAACTCTTGCTCTTGTATTTGCATTTGCCCTTGCGCTTTGCTAACAAATCATCTCGGTATCTTTTCTTATTTGGCGGTTTCATCA_-_ATGAAGATGGGCTCAGGAGGTTCCAGTGTGGTGGTGCCAAGGAATTTTCGGTTACTGGAAGAACTTGAGAGGGGAGAGAAAGGAATAGGCGATGGAAGCGTCAGCTATGGAATGGACGATAGCGATGATATATACATGCGGTCATGGACTGGTACAATAATTGGTCCTCACAATTCGGTGCATGATGGGCGAATTTATCAATTAAAGCTATTCTGTGATAAGGATTATCCCGAGAAGCCTCCCAATGTAGGATTTTGTTCTCGGGTCAACATGACTTGTGTTAATCAGGAGACTGGACGGGTTGATCCAAAGCATTTTCCAATGCTTGCAAATTGGAGGCGTGAGTATACAATGGAAGACATTCTCACACATTTGAAAAGAGAAATGCTGGCTTCTTACAATCGGAAGTTGGTACAACCTCCGGAAGGCACATTCTTCTAG___GAAGTTGTCTTATATTTCTCTTTCTATTCGTCACTTTGAATTGCAGCTTTGCATAGTCTATGTAACACATTATGAGTGACAAGTCAAAAGGTCTGGGTCTGTTCTGTACTGTATACGTGAATTTGAAGAAGGCTTATCTGTACTTCCTTGCTTCTGTGAGATACAGATGCCATAGTTATATACTATTCCTAGCGGTTATGATCTTTCTGTGAATTTGAAAAAGGTTTATCTGTACTTCGTTTCTTCTATGAGAAACAGATGCTGAAGTTTATACTATTACTTACGATTATGACTTGATACAATGTGAAGAGTCCATGAAATCTTTTTGCTGAAGTTGTAATTTTATTGGCTGGATGATGTTGAACTGCTTTTATCCTTTCGATCTTTAATGCCTGTGCAACTATGGTCACTGAGCATGTTTGATACAGGCTTGTATAGTTAATACAGGCTCTAAAAGGAGTATTCAAAGACTTGCATGACACAACTTCCTCTCTTTAAAGGTTATGCTTGTCTGGAACGTGTAAGTCTTTGGTTCTATTTATCTGCAAAAGCAGGTGATTGTTCTTGTTGTTCTCTTGAAGGCCGTCTCTGCTAAGTGATAAAAGGCGATGAATGAATTTAATGGTCAAGTTCGGTGATCTAGTTGTTTTGTTCGTTGCGTCCTGAGATTGCCAAAAAAGGAACTGAAGTGACTGCTGCTATATCAGCAGTCAACTATTTTTGTAACAATTGATAAACCTGTGGACTGTAATACTGGTTCCATGTAATTTTTATTTAGATTGTCAATTGACTTTAGTTTTGATTAGCATCCCCTCGGAGATTCATCAGTACAATGAGTAATAATCATTGACCAAATT

Fln Alignment:

sp_v1.1_unigene8162___PRNFRXXXXXERGEKGIGDGSVSYGMDDSDDIYMRSWTGTIIGPHNSVHDGRIYQLKLFCDKDYPEKPPNVGFCSRVNMTCVNQETGRVDPKHFPMLANWRREYTMEDILTHLKREMLASYNRKLVQPPEGTFF
A9NTX0______________PRNFRLLEELERGEKGIGDGSVSYGMDDSDDIYMRSWTGTIIGPHNSVHDGRIYQLKLFCDKDYPEKAPTVRFCSRVNMTCVNQETGRVEPKHFSMLANWRRDYTMEDILTHLKREMLASHNRKLVQPPEGTFF

SNPs (tot: 92)

Position	A %	C %	G %	T %	Probability
378	25			75	0.996473
528		83	16		0.994512
531		83	16		0.994512
534	83		16		0.994512
535	83	16			0.994512
536	83	16			0.994512
537	11		88		0.923564
539			10	90	0.90298
540			10	90	0.90298
851	95	4			0.999984
855		95	4		0.999984
856			4	94	0.999919
860	4			95	0.999984
861	95	4			0.999984
864	95	4			0.999984
909	1	95		3	0.904136
910		96	3		0.984346
913		96		3	0.98536
915		3		96	0.98536
916	3			96	0.986325
917			3	96	0.986325
919		3		96	0.986325
920	3	96			0.986325
922			3	96	0.986325
923			3	96	0.986325
927	96	3			0.987242
929		3		96	0.987242
942		96	3		0.986325
943			3	96	0.986325
946		96	3		0.986325
948		4		95	0.999991
949	4			95	0.99999
952	96	3			0.987242
953		3		96	0.987242
955		96	3		0.988113
961	3	94		1	0.924724
963	1		3	94	0.924724
979	3			96	0.988113
983	96	3			0.988113
987	1		94	3	0.941977
988	1	94	3		0.941977
990			3	96	0.991164
998	94		5		0.999996
1001	5	92		1	0.999984
1008	3			96	0.993591
1016			4	96	0.99411
1023	93		2	4	0.973796
1027		93	6		0.999998
1029		8		91	1.0
1031	2	6		89	0.999986
1032	2	8		89	1.0
1033	6	2	91		0.999995
1035		93	6		0.999999
1070		5	94		0.998578
1071		5	94		0.998578
1230		4		93	0.979066
1264		95		5	0.997749
1265	92		5		0.990091
1266		95	5		0.997749
1267	2	92		5	0.990091
1268	95		4		0.997494
1273	95	5			0.997749
1329	5	94			0.998894
1339	6			93	0.99903
1341			6	93	0.99903
1343	96	3			0.988113
1395	94	3			0.941977
1397	85	12			1.0
1399		10		89	1.0
1401	9	90			1.0
1434		5	90		0.965994
1435	2	2	90	5	0.965994
1446		6	93		0.999153
1470		3	6	90	0.997952
1471		10	90		1.0
1474	6	90		3	0.997952
1475		93	6		0.999453
1476		93	6		0.999453
1477	93			6	0.999453
1478	6	93			0.999453
1482	92	7			0.999532
1483			7	92	0.999532
1502	61	7			1.0
1507	25	66		8	1.0
1508	75	8		16	0.99999
1509		30		10	1.0
1511		25		75	1.0
1512		25	75		1.0
1529	83		16		0.994512
1530	16	83			0.994512
1531			85	14	0.993533
1534	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain