SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8157

Length: 1072 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8157 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Golgin-84, putative n=1 Tax=Ricinus communis RepID=B9RKJ0_RICCO	-	-	56%
FL-Next	sp=Golgin-84; Oryza sativa subsp. japonica (Rice).	-	-	51%
Blast2go	golgin candidate 1	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast fission	GO:0010020	Biological Process	72%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	72%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5JLY8

Fln msg: Distance to subject end: 206 aas, your sequence is shorter than subject: 357 - 709

Fln protein: MGIQEPLFPRRDLGCHSKTYDTSSQAALASDSFAVPVLDHETVKCNFGAENDIVTVELLAGKESSMETPNRDSTGYESEAEGSKKKLMEENISPKPSIQNEQHKEGSRSPVTKVEDQLDEAQGLLKTAVSTGQSKEARLAKVCAGLSSRLQEYKSENAQLEELLITEREEKKVFDARVKQLEREISLAKAATSSVEAEMADALASKNTEIESLRTSIESLKRQGAVAEEKLATLQANTEAVMRNRELTETRMIQALREELASTERREEEERAAHNATRMAAMERETELEQRAAESSAALARIQRTVDERTQKIADLEQKVSMLEIESATLNQELHEWEARSRREQKRSTEEANQTSQ

Protein Length: 358

Fln nts: ATGGGAATACAGGAACCCCTATTCCCCCGTCGTGACCTTGGCTGTCACTCAAAAACTTATGACACATCTTCACAAGCAGCACTTGCCTCTGATTCTTTTGCAGTTCCAGTTTTAGATCATGAGACTGTAAAATGCAACTTCGGAGCTGAAAATGACATTGTGACAGTAGAGCTGCTTGCAGGGAAGGAATCTTCAATGGAGACTCCAAATAGGGATAGTACTGGATATGAAAGTGAGGCAGAAGGAAGTAAGAAAAAACTTATGGAGGAAAACATTTCGCCAAAGCCTTCAATTCAGAATGAACAACACAAGGAAGGATCAAGGTCTCCTGTTACAAAAGTAGAAGATCAACTTGATGAGGCACAAGGGTTACTGAAAACTGCTGTTTCAACAGGCCAGTCCAAGGAGGCCAGGTTAGCCAAGGTTTGTGCAGGGCTTTCATCTCGCCTCCAGGAATATAAATCTGAAAATGCACAACTGGAGGAGCTGCTTATTACAGAGAGAGAAGAGAAGAAGGTATTTGATGCTCGGGTAAAGCAGCTAGAGCGAGAGATATCTTTAGCAAAGGCTGCAACAAGTTCCGTTGAAGCAGAGATGGCTGATGCCTTAGCTTCAAAGAATACTGAAATTGAATCATTGAGAACCTCCATAGAATCTTTAAAAAGGCAGGGTGCTGTTGCTGAAGAAAAACTTGCAACATTGCAGGCAAACACAGAAGCTGTGATGAGAAATCGAGAATTAACAGAGACAAGAATGATACAGGCACTACGTGAAGAGTTGGCATCAACTGAAAGAAGGGAAGAGGAGGAGCGTGCAGCTCATAATGCTACTCGAATGGCAGCCATGGAGAGGGAAACAGAATTAGAGCAGCGTGCAGCTGAGTCATCTGCAGCATTGGCAAGAATACAGAGAACAGTTGATGAAAGAACTCAGAAAATAGCAGATTTGGAACAGAAGGTGTCAATGCTCGAGATAGAGTCTGCAACCTTGAATCAAGAGCTCCATGAATGGGAGGCTCGATCCCGACGGGAACAGAAGCGGTCAACAGAAGAAGCTAATCAAACATCTCAGT

Fln Alignment:

sp_v1.1_unigene8157___ASDSFAVPVLDHETVKCNFGAENDIVTVELLAGKESSMETPNRDSTGY--ESEAEGSKKKLMEENISPKPSIQNEQHKEGSRSPVTKVEDQLDEAQGLLKTAVSTGQSKEARLAKVCAGLSSRLQEYKSENAQLEELLITEREEKKVFDARVKQLEREISLAKAATSSVEAEMADALASKNTEIESLRTSIESLKRQGAVAEEKLATLQANTEAVMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXXXXXRMAAMERETELEQRAAESSAALARIQRTVDERTQKIADLEQKVSMLEIESATLNQELHEWEARSRREQKRSTEEANQTSQ
Q5JLY8______________AAESSAPSVPDERCEPSISNQDAEIVSAVNLEEKDSAMEVIHEKNIKEVPDTQVSGKSQDSKREGLSDSPESTENQQEHKLDSGSVKDQDQLEEARGLLKNVVKTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVQEREKCSSYEAHMKQLQQELSMSRVEGSRAESNMVDALTAKNAEIESLVKSLDSWKKKAAASEEKLAALQEDMDGLKRNRELTETRVIQALREELATVERRAEEERIAHNATKMAAVEREVELEHRAVEASNALARIQRAADQSSSRAMELEHKVAVLEVECASLQQELQEMEARNRRAQKKPSEEANQVIQ

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
468			75	25	0.996473
588	25		75		0.996473
661		40		60	1.0
664	20		80		0.995493
679			40	60	1.0
705	60			40	1.0
718	80			20	0.995493
719			20	80	0.995493
729	20	80			0.995493
730		20		80	0.995493
731		20		80	0.995493
752		40		60	1.0
815	50		50		1.0
828		16		83	0.994512
837		71		28	1.0
916	71		28		1.0
1019	12		87		0.992554
1020			12	87	0.992554
1024			14	57	1.0
1025			85	14	0.993533
1026	85	14			0.993533
1027			87	12	0.992554
1031		87		12	0.992554
1033			85	14	0.993533
1035	12	87			0.992554
1036	87			12	0.992554
1037	85	14			0.993533
1038		14	85		0.993533
1039	12		87		0.992554
1041		85		14	0.993533
1042	85	14			0.993533
1043		85	14		0.993533
1046	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain