SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8149

Length: 1646 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8149

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-glucan water dikinase, chloroplastic n=3 Tax=Solanum RepID=GWD1_SOLTU	-	-	76%
FL-Next	sp=Alpha-glucan water dikinase, chloroplastic; Solanum tuberosum (Potato).	-	-	76%
Blast2go	glucan water dikinase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-glucan, water dikinase.	EC:2.7.9.4	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	response to symbiotic fungus	GO:0009610	Biological Process	86%
Blast2go	starch catabolic process	GO:0005983	Biological Process	86%
Blast2go	cold acclimation	GO:0009631	Biological Process	86%
Blast2go	alpha-glucan, water dikinase activity	GO:0050521	Molecular Function	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Pyruvate phosphate dikinase, PEP/pyruvate-binding	IPR002192	-	86%
Blast2go	ATP-grasp fold, subdomain 1	IPR013815	-	86%
Blast2go	ATP-grasp fold, subdomain 2	IPR013816	-	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9AWA5

Fln msg: your sequence is shorter than subject: 324 - 1464

Fln protein: FNGKYAISADEFSDELVGAKSRNIAYLRGKVPSWVRVPVSIALPFGVFEKVLSEDMNKGVAEKIEALDKLVAKGDFSKLHKIREIVLQMNAPSQLVGELKDKMQRANMPWPGEEGEERWLQAWMAIKRVWASKWNERAYFSTRKAKIDHSDLCMAVLVQEIISADYAFVIHTTNPSTGDSSEIYAEIVKGLGETLVGAYPGRAMSFVTKKTDLNQVKVLGYPSKPIGLFIRQSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKRTIDYSSDSLVVDHNFRQSILSKIAQVGHAVEELYGSPQDVEGVVKDGEIYVVQTRPQM*

Protein Length: 325

Fln nts: TTCAACGGGAAGTATGCAATCTCAGCTGATGAATTTTCCGATGAACTGGTTGGTGCTAAGTCTCGCAATATTGCTTATTTGAGAGGGAAAGTTCCTTCATGGGTGCGAGTTCCTGTGTCAATTGCCTTACCATTTGGTGTGTTTGAGAAAGTTCTATCAGAAGATATGAACAAGGGTGTTGCTGAAAAAATAGAAGCTCTGGACAAACTTGTAGCCAAAGGAGACTTTAGCAAACTCCACAAAATTCGAGAAATTGTTCTGCAAATGAATGCACCTTCCCAATTGGTGGGTGAACTGAAAGATAAGATGCAGAGAGCAAATATGCCTTGGCCTGGTGAGGAGGGTGAAGAGCGATGGTTACAGGCTTGGATGGCGATTAAAAGGGTTTGGGCTTCGAAGTGGAATGAAAGAGCGTATTTTAGTACACGAAAGGCAAAAATAGATCATAGTGACCTTTGTATGGCTGTTTTGGTTCAAGAAATAATCAGTGCAGACTATGCATTTGTCATTCATACTACTAACCCATCAACAGGAGACTCATCTGAGATTTACGCCGAGATTGTAAAAGGTTTGGGAGAAACACTAGTTGGGGCCTACCCTGGTCGAGCTATGAGTTTCGTTACTAAGAAGACAGACTTAAATCAAGTCAAGGTATTGGGCTACCCCAGCAAACCGATAGGACTATTCATCAGACAGTCTATTATCTTCAGATCTGATTCAAATGGTGAAGATCTAGAGGGTTATGCAGGTGCTGGTCTTTATGACAGTGTTCCCATGGATGAAGAGGAGAAAAGAACAATTGATTATTCCTCAGATTCACTTGTCGTGGATCACAATTTTAGGCAGTCCATACTATCAAAGATTGCTCAAGTTGGACATGCAGTCGAGGAACTTTATGGATCTCCCCAGGATGTTGAAGGTGTAGTAAAAGATGGTGAAATCTATGTTGTGCAGACCAGGCCTCAAATGTAA___AGGATGCATCCGAGGAATAAAAATATCCATTAATGAGAAATATAACATGTAGTCTTAGAATGCCCACCCTTTTTCTCTTCAGGTATTTATTAACTCAGAAGCTTGGTGTCTGGGATGCTTTCTGCTATAGCAGAGCTTGCAGTTTATTAGAGTGGCAGTCGTTTTCATCGCTGCAGAGGCATTGTATGGCAAACTGTCCACTTTATATTTGTGCCAGCTTTGGGCATCGGGCCCTTCAAGATTACTCCTGGAGCATATTCATGTTAGTGATATGTATAGGTTGTGGGGCATACCACTGAAGTGGTTAGCTTGTTCTGAAGCTTGGAACTTACTGTGCATTTCAAGCAGGGAAAATATTCCTTATCGTTATATCTAGACAGAGAGGGATGGACAGAGAAAGGAATTGCAATTAAAGGGTGGTATTGAATAAATCAACATTGGCTAGTTGCAGCAATCAATAATTTTTCAAATATTATAGAATTTTATCACATGAAGAGGATAACAATGGCGTTTGACTTTTTCCTTGTTTCAGCTATTCTCATAAATATGGACTTCATAATGTTTGGAAAAAAAAATGTTGCGAATATTACCACGTAAGTTCAAACGCAAAAATATTATTGTTGCGAATATTACCACGTAAGCTCAAACTCAAAACCTTTTATATAAAGCAAATT

Fln Alignment:

sp_v1.1_unigene8149___FNGKYAISADEFSDELVGAKSRNIAYLRGKVPSWVRVPVSIALPFGVFEKVLSEDMNKGVAEKIEALDKLVAKGDFSKLHKIREIVLQMNAPSQLVGELKDKMQRANMPWPGEEGEERWLQAWMAIKRVWASKWNERAYFSTRKAKIDHSDLCMAVLVQEIISADYAFVIHTTNPSTGDSSEIYAEIVKGLGETLVGAYPGRAMSFVTKKTDLNQVKVLGYPSKPIGLFIRQSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKRTIDYSSDSLVVDHNFRQSILSKIAQVGHAVEELYGSPQDVEGVVKDGEIYVVQTRPQM
Q9AWA5______________FGGCYAISADEFTSEMVGAKSRNIAYLKGKVPSSVGIPTSVALPFGVFEKVLSDDINQGVAKELQILMKKLSEGDFSALGEIRTTVLDLSAPAQLVKELKEKMQGSGMPWPGDEGPKRWEQAWMAIKKVWASKWNERAYFSTRKVKLDHDYLCMAVLVQEIINADYAFVIHTTNPSSGDDSEIYAEVVRGLGETLVGAYPGRALSFICKKKDLNSPQVLGYPSKPIGLFIKRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVVIDYSSDPLITDGNFRQTILSNIARAGHAIEELYGSPQDIEGVVRDGKIYVVQTRPQM

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
216		87		12	0.992554
567	88		11		0.923564
1147	92		7		0.999664
1358	5		65		1.0
1361			65	5	1.0
1366	5		65		1.0
1367	65			5	1.0
1368			65	5	1.0
1497		33		66	0.997452
1510		60		40	1.0
1544	33			66	0.997452
1547	33			66	0.997452
1548	33			66	0.997452
1550	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain