SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8146

Length: 1416 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8146

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mitochondrial uncoupling protein, putative	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	photorespiration	GO:0009853	Biological Process	90%
Blast2go	transport	GO:0006810	Biological Process	90%
Blast2go	oxidative phosphorylation uncoupler activity	GO:0017077	Molecular Function	90%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0D2

Fln msg:

Fln protein: MATSKPTPKTQVSIAGTFASSAFSACWAEICTIPIDTAKVRLQLQGKQTAGEAPKYKGMVGTMSTIAREEGVASLWKGIIPGLHRQCLFGGLRIGLYEPVKNLYVGKDFVGDVPLYTKILAALTTGAVAITVASPTDLVKVRLQSEGKLPPGVPRRYSGAMNAYATIVRQEGVRALWTGLGPNVARNAIVNAAELASYDQVKQTLLKLPGFSDNVLTHLLSGLGAGFFAVCVGSPVDVVKSRMMGNSQAYKNTLDCFVKTLKYDGPLAFYKGFIPNFGRLGSWNVIMFLTLEQVKKLFAREVPS*

Protein Length: 306

Fln nts: CGTCGTGACCTTGGATGGGGAGCTGGGATTTGGACAATTGTAAGCATCAAACTGCACCAATTATATCAAAGAATATTCACCTGCTGTATAATTGAAGCATCGAAGCAGATCGCAATTCATGACTATATAAACCGGTGAAGGAAAGCTCTCTCTTCCTCCCCCGGCAAACTACAAATAAAATTCGAGACGGAGTGACCAACCAAATCGGAGCCTCC_-_ATGGCCACATCAAAACCTACGCCCAAGACCCAGGTCTCTATAGCGGGAACTTTTGCCAGCAGCGCTTTCAGTGCTTGCTGGGCCGAGATATGCACCATCCCAATAGATACAGCTAAGGTGAGGCTCCAATTGCAAGGAAAGCAAACAGCTGGCGAAGCACCAAAGTACAAAGGTATGGTTGGTACCATGTCTACCATCGCCAGAGAAGAAGGGGTTGCATCTCTTTGGAAGGGCATAATCCCTGGTCTACATCGACAATGTCTGTTTGGAGGACTTCGTATCGGACTTTATGAGCCGGTTAAAAATCTCTACGTTGGAAAAGATTTTGTGGGGGATGTTCCCCTATATACGAAAATTCTTGCAGCTCTCACAACAGGAGCTGTGGCAATTACGGTGGCTAGCCCCACCGATCTTGTGAAAGTGCGACTACAGTCAGAAGGGAAGTTGCCACCTGGGGTACCAAGACGTTATTCGGGAGCAATGAATGCATATGCCACAATTGTTAGACAAGAAGGGGTGAGGGCTCTGTGGACAGGACTTGGCCCAAATGTGGCACGCAATGCTATTGTTAATGCTGCTGAGCTGGCTAGTTATGATCAAGTGAAACAGACTCTATTAAAACTACCAGGGTTTTCTGATAATGTTTTGACACATTTGCTCTCGGGACTTGGTGCTGGATTTTTTGCAGTTTGCGTGGGCTCCCCAGTGGATGTTGTAAAATCAAGAATGATGGGAAACTCTCAAGCCTACAAAAATACATTAGATTGTTTCGTCAAGACTTTAAAATATGATGGCCCCCTAGCATTTTACAAGGGATTTATTCCCAACTTTGGCCGACTCGGGTCATGGAATGTAATAATGTTCCTGACGTTGGAGCAGGTCAAAAAACTATTCGCGAGAGAAGTACCGAGTTAA___TTTCTTGTTGAAATGTGGAGTTGTGAAATGTTGATCAATGACTTTTAGATCATTTGATTGATATTATTCTCTTTATAGGCGTACCGTGTCTTTATTTTTTATGATCCTTAATTTTGAATGTGAGAATAATTTTATCGAGGCTCAACAAAGGCTTTAAATTCTGCCTTTGGCCAATTATTTGGTTGCTAACCAATTTTTGCAGAGCTCCAAGTGTTATTTTTGATGAATAAAGAGAAGTGATTTAAGGTGAGTCAATTCAATAAGAAAATGGCTTTGAGCTTACAAC

Fln Alignment:

sp_v1.1_unigene8146___MATSKPTPKTQVSIAGTFASSAFSACWAEICTIPIDTAKVRLQLQGKQTAGEAPKYKGMVGTMSTIAREEGVASLWKGIIPGLHRQCLFGGLRIGLYEPVKNLYVGKDFVGDVPLYTKILAALTTGAVAITVASPTDLVKVRLQSEGKLPPGVPRRYSGAMNAYATIVRQEGVRALWTGLGPNVARNAIVNAAELASYDQVKQTLLKLPGFSDNVLTHLLSGLGAGFFAVCVGSPVDVVKSRMMGNSQAYKNTLDCFVKTLKYDGPLAFYKGFIPNFGRLGSWNVIMFLTLEQVKKLFAREVPS
A9P0D2______________MATSKPTPKTEISIAGTFASSAFSACWAEICTIPIDTAKVRLQLQGKETAGKTPKYRGMFGTLSTIAREEGVASLWRSIVPGLHRQCLFGGLRIGLYEPVKNLYVGKDFVGDVPLYTKILAALTTGAVAITVASPTDLVKVRLQSEGKLPPGVPRRYSGAMNAYSTIVRQEGVRALWTGLGPNIARNAIVNAAELASYDQVKQSLLKLPGFSDNVFTHLLSGLGAGFFAVCVGSPVDVVKSRMMGNSDAYKNTLDCFIKTLKYDGPLAFYKGFIPNFGRLGSWNVIMFLTLEQVKKLFAREVPS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
181	40			60	1.0
567	80		20		0.995493
905	4			95	0.997218
908		95	4		0.997218
1124	90		10		0.90298
1409		50		33	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain