SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8145

Length: 1894 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8145

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 750A1 n=1 Tax=Pinus taeda RepID=C75A1_PINTA	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	cytochrome p450 monooxygenase cyp736b	-	-	68%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome P450	IPR001128	-	68%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	68%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PS63

Fln msg:

Fln protein: MAFHSLRSLPFPATFTVADGGPPAATVLCLLWSFFMIWFLRKRRTSATLPPGPYAWPIIGNLHQLILPAHRSLRALADKYGPILFLHLGSVPTVVVSSSETAKEFLKTHDLIFASRPPTAAGRLMFSNSKDVVFAPYGDHWRQMRKICVLELLTAKRIESFKSVREEEVSAMISSIWEESEKGKMGVNVSKAVSTLTSNIVWRILAGRKFSDDDLGGDFKGFKGLMTELTATVGEFNIGDFIPYLDWLDLQGIKRRMKKIHKTFDEFAEKIIDDHVNVNHLQKEAVDAEPHVQDFVDVLLHMAKADTKITRETIKAVVLDLFGAGLDRISISLEWAMSELLRHPRAMKKLKEEIESVVGQHWKVKESDLANMKYLHCVVKETLRLYPAAPLAIPHESAETVTVGGYFIPKKTMLMVNVWAIGRDPKVWGADASEFKPERFMEDEHVNVTDPSNFNMIPFGAGRRGCPGASMAIPTVQLALAQLLHTFDWRVDGDPSHLDMREACGLTIPRKVPLSAFPKLSSSFPM*

Protein Length: 528

Fln nts: TTCAGTGCTTAGTGATTAGGAAGGGTGTGCGTT_-_ATGGCTTTCCATAGTTTGCGTTCTCTACCTTTCCCTGCAACATTCACAGTCGCTGATGGAGGGCCTCCCGCAGCAACTGTTCTGTGCCTACTCTGGTCTTTCTTCATGATATGGTTTTTGCGCAAGAGAAGAACTAGTGCCACGCTGCCACCAGGACCCTATGCATGGCCCATCATAGGAAATCTCCACCAATTAATACTGCCCGCTCACCGTTCTCTTAGAGCCCTTGCTGACAAATATGGTCCCATTCTGTTTCTGCACTTAGGCTCTGTCCCTACCGTCGTCGTTTCTTCTTCTGAGACGGCCAAAGAGTTTCTCAAAACTCATGACTTGATTTTTGCCAGTCGACCCCCAACAGCCGCTGGGAGATTGATGTTTTCCAACTCCAAAGATGTGGTGTTCGCTCCATATGGAGATCACTGGAGGCAAATGAGAAAAATATGCGTGTTAGAACTACTGACTGCCAAAAGAATCGAGTCCTTCAAGAGTGTGCGAGAGGAAGAGGTGTCTGCGATGATCTCTTCAATTTGGGAGGAGAGTGAGAAGGGAAAAATGGGCGTGAATGTGAGCAAGGCCGTCTCCACTCTCACCTCCAATATTGTTTGGCGAATACTGGCGGGGAGGAAATTTTCTGACGATGATTTGGGTGGCGATTTCAAAGGGTTTAAAGGCCTGATGACAGAGTTGACAGCTACAGTGGGAGAGTTCAACATTGGCGACTTCATTCCGTATTTGGATTGGCTCGATTTGCAAGGTATCAAACGCCGCATGAAGAAAATTCATAAAACATTCGATGAATTTGCGGAGAAAATAATAGACGACCATGTTAATGTGAATCATCTCCAGAAAGAGGCCGTAGACGCAGAGCCTCATGTTCAAGACTTCGTGGATGTGCTGCTACACATGGCTAAGGCCGACACCAAAATTACACGGGAAACCATCAAGGCTGTTGTGCTTGACTTGTTCGGCGCTGGCTTGGACAGAATATCAATTTCGTTAGAATGGGCAATGAGCGAGCTGCTCAGACATCCCCGTGCAATGAAAAAATTAAAAGAGGAAATCGAATCGGTCGTTGGCCAACACTGGAAAGTAAAGGAGTCCGATCTAGCAAACATGAAATACCTCCACTGTGTGGTGAAAGAGACTCTGCGACTATACCCAGCGGCGCCCTTAGCGATTCCTCATGAATCTGCAGAGACTGTGACAGTAGGAGGATACTTTATCCCGAAGAAAACAATGTTGATGGTGAATGTGTGGGCTATAGGAAGGGATCCTAAGGTGTGGGGGGCAGATGCTTCTGAATTCAAGCCAGAGAGATTCATGGAAGACGAACATGTCAATGTAACAGATCCATCAAATTTCAATATGATACCGTTCGGTGCAGGAAGGAGAGGATGCCCAGGAGCATCGATGGCTATTCCTACGGTTCAGCTTGCATTGGCTCAGTTGTTACACACTTTTGATTGGAGAGTGGACGGTGATCCGTCCCACTTGGATATGAGGGAAGCATGTGGATTGACCATTCCAAGGAAAGTGCCTCTCTCTGCTTTTCCAAAGTTGAGCAGCAGCTTTCCAATGTAA___TACCTGGGAGGATACAAGCGACGATGCCTTTTCTTCGTTTTTCTTAGTTGGTCATGGTTTTTCTGTTTCAATAATGGAGAAATCTCTAGAATAATCTCCAAATCAGTTTTCTGTCGTTAAAACTGTTATGTGTCGTTAAAAGAGAGACTTGGTTGGTCTATTCTAAGAATCTGCTCAATCATAATATACTTTTATATATGTAATAGTTTCGTCGTGAATACAAGTAAGTGTTGTGGTGTAGTCTTCTGAGGAAGCCACTTTCTCACGAGAGATCTGCATC

Fln Alignment:

sp_v1.1_unigene8145___MAFHSLR-SLPFPATFTVADGGPPAATVLCLLWSFFMIWFLRKRRTSATLPPGPYAWPIIGNLHQLILPAHRSLRALADKYGPILFLHLGXXXXXXXXXXETAKEFLKTHDLIFASRPPTAAGRLMFSNSKDVVFAPYGDHWRQMRKICVLELLTAKRIESFKSVREEEVSAMISSIWEESEKGKMGVNVSKAVSTLTSNIVWRILAGRKFSXXXXXXXXXXXXXXMTELTATVGEFNIGDFIPYLDWLDLQGIKRRMKKIHKTFDEFAEKIIDDHVNVNHLQKEA------VDAEPHVQDFVDVLLHMAKADTKITRETIKAVVLDLFGAGLDRISISLEWAMSELLRHPRAMKKLKEEIESVVGQHWKVKESDLANMKYLHCVVKETLRLYPAAPLAIPHESAETVTVGGYFIPKKTMLMVNVWAIGRDPKVWGADASEFKPERFMEDEHVNVTDPSNFNMIPFGAGRRGCPGASMAIPTVQLALAQLLHTFDWRVDGDPSHLDMREACGLTIPRKVPLSAFPKLSSSFPM
C0PS63______________MAFHNLSVCLPLPATSSTA-------AILCIFFSFFFIWFSHNRRIRARLPPGPYALPIIGNLHQLVLPAHRTFKSLADKYGPIFFLRLGSVPTVVVSSSEIAKQFLKNHDLIFASRPPRAAGRLMFFNSKDVAFAPYGDHWRQMRKICVLELLTAKRIESFKHVREEEVSAMIRSVWEESGNGRTGVNVSKAISTLTSNIVWRILANRKFSDDDLGGDFKGFKDLLVELTARVGDFNIGDFIPYLDWLDLQGISRCMKKIHKTFDEFAEKIIDDHVNVNHLMAAASNGQKRADAEPHVQDFVDVLLHMAVTNTKITRKTIKALVLDMFAGGLETTSTTLEWAMSELLRHPNVMKRLQEEIDSIVGHHGKVKESDLATMKYLHCVVKETLRLYPAVPLAIPHESVEAVTVGGYYIPKKATVMVNVWAIGRDPNVWGAYASDFKPERFMENEHINLTDQSDFSMIPFGSGRRGCPGASMAIPTIELALAQLLHTFDWRVEGDPSRLDMKEACGLTIPRQVPLCAYPSLRVSFPL

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
548	72		28		1.0
588	76		17		1.0
600	25		75		0.996473
1466			81	18	0.999994
1522		11		88	0.923564
1537	88		11		0.923564
1565	66		33		1.0
1569		66	33		1.0
1571			33	66	1.0
1574			41	58	1.0
1593		42		57	1.0
1608		69	30		1.0
1631		66		33	1.0
1632	45	18	36		1.0
1636		36	63		1.0
1640	63		36		1.0
1641		36		63	1.0
1662	85	14			0.993533
1665	28			71	1.0
1669		85	14		0.993533
1674			14	85	0.993533
1677		42		57	1.0
1684		28		71	1.0
1691		28		71	1.0
1710	50			50	1.0
1716	50			50	1.0
1750		33		66	0.997452
1759	33			66	0.997452
1760			33	66	0.997452
1767			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain