SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8142

Length: 923 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8142

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flavonol synthase/flavanone 3-hydroxylase, putative (EC:1.14.11.23)	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	ethylene-forming enzyme	-	-	70%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW44

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 82 aas, putative chimeric sequence, your sequence is shorter than subject: 206 - 373

Fln protein: RRDLGCHSFFQVLNHGIEEGTLRRIMEVALEFFTLPLEEKERYRMKPGTIQGYGHGFIFSEDQKLDWCDMMALGTMPKAIRKENLWPTKPPYFRDILEAYSRDVLKLCRTILRLISENLHLEPDFFNDMFGENVQIVRMNYYPPCSRPDIVLGLSAHSDGSALSILLQEDEPTGLQILNNNHWISVKPIPGALVVNIGDTLEVSI*

Protein Length: 207

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTTCAGGTCTTGAATCACGGGATTGAGGAAGGAACACTCAGGCGCATAATGGAAGTGGCCCTGGAATTTTTCACTCTCCCCTTAGAAGAGAAGGAGAGGTATCGAATGAAGCCGGGGACAATCCAGGGATACGGCCACGGTTTTATCTTCTCTGAGGACCAGAAGCTGGACTGGTGTGATATGATGGCATTGGGAACAATGCCCAAGGCTATCAGAAAGGAAAACCTTTGGCCAACCAAACCTCCTTATTTCAGGGATATTTTGGAAGCTTATTCAAGGGACGTTTTGAAGTTGTGTAGAACCATCCTCCGACTCATTTCGGAGAATCTCCATCTGGAGCCCGACTTCTTTAACGATATGTTCGGAGAAAACGTACAAATTGTGCGCATGAACTACTATCCGCCTTGCAGCAGGCCTGACATAGTTCTAGGTTTAAGCGCTCACTCAGACGGGAGTGCTCTGAGTATATTGCTCCAAGAAGATGAGCCAACAGGCCTGCAAATTCTTAACAACAACCATTGGATTTCTGTGAAGCCAATCCCCGGTGCACTGGTCGTCAACATCGGGGACACTTTAGAGGTCAGTATATAA___CTATAAACCGGAAAGGCCATATATCCTTATAGACCCAAAGGCAATATAAATCCATTGTTTGCAGCAATTAATACTCTCAGGAAACTTTTCTGAACCCAAGGTAGTACAAGTCCACGGTTTGCAGCAATTTGCAACTTCTGTTATTCAATTCTCTTTGTCATCACTTGAATCACAATTGGAAAAGTAGTACTCGTTTCAAACTTTCGAGATTTTTGCTGCTCAAATTTTTGAGGTTGACATTTGAATTTGATTCATATATGTTATATGCAGGTCTTAACTAATGGAAAATTCAAGAGTATTGAACA

Fln Alignment:

sp_v1.1_unigene8142___FFQVLNHGIEEGTLRRIMEVALEFFTLPLEEKERYRMKPGTIQGYGHGFIFSEDQKLDWCDMMALGTMPKAIRKENLWPTKPPYFRDILEAYSRDVLKLCRTILRLISENLHLEPDFFNDMFG-ENVQIVRMNYYPPCSRPDIVLGLSAHSDGSALSILLQEDEPTGLQILNNNHWISVKPIPGALVVNIGDTLEV
A9NW44______________FFQIVNHGIPHSLLDAIKGVAKEFFNLPLQEKQKCAPQAGDVQGYGKTFVVAEDQTLDWGDLLALALMPNNLKNLALWPTVPTNFRDTVERYAIEVERVAQEVLSLFAENLHLEAEYFKDKFGSEPTNLMRMNLYPPCPRPDLVLGLSPHSDGGGITLLLQDDQTEGLHVRKNNQWIPVQPIPYALVVNIGDLVEV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
131		40	60		1.0
141		25	75		0.996473
167		25	75		0.996473
209		25		75	0.996473
214			60	40	1.0
303	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain