SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8118

Length: 1471 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8118 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING finger-like protein [Oryza sativa Japonica Group] dbj\|BAB90773.1\| RING finger-like protein [Oryza sativa Japonica Group] dbj\|BAG89633.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	6.0e-39	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	zinc finger family protein	-	-	0.0	63%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	63%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	63%
Blast2go	Zinc finger, RING-type, conserved site	IPR017907	-	63%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NND1

Fln msg:

Fln protein: MEGVLDMDKSFITSLDNSYACSSNAAAGKTVQDEGKQFYTPNVAAFQNADDSCICAICLDTIQPEETAQIKGCGHNYCVSCILRWASYVDNPWCPQCKHRFSSLYVYRAIDGSMHDYMVEESICLLLRAPWFELFPPQEAYDEQDDYPYEDEIDEEYYGTSNIRLGNRRWGDSGYVRAGRKEARPVGARGHGTNHEAGGSSARASKGKEVSKEAVGRRALRAQKREAADKAAAAKHQKHLQKLGRKAF*

Protein Length: 250

Fln nts: CGTCGTGACCTTGGCTGTCACGCACTCCCACAAGAAAAAAAGGAGCCCGTCCATTTTCACATCCCCGATCCAGACCGGATCCAATCGCGGCCTTTTTCATTTCAACAACTTATTCACAGATAGAATCTAGACTGCTACCTTCTTGTTTTAGTTCAATCCTGGCGTTGTGGGTTTCTGAAATAAGGCCTAGGGTTTCATTTTCAGCCTGACTTGATTGACCTATCATAAGAGTGATGGAATTGAGATTTGAAGGCGGATCTGCATAAATCTGGACTGCCATGAGAGCGGCGTCATTTCACCCTATCTCATTGGGTTACCTGGACGAGCCGAGGCTTCTCTTTTCTGGGGGAGGAGCTCTTGATATCCGTTCCAGGTCAAATACATCATCAAAAGATCGGATTTCCCTCACCAGGCCGTGCGAGGTCGTCCTTTTCCAGAACAAATCTTTCTAGAATCGCATTA_-_ATGGAAGGCGTTCTGGACATGGATAAGTCCTTTATCACCTCCCTGGATAACTCTTATGCTTGCTCATCCAACGCGGCTGCAGGCAAAACGGTGCAGGATGAGGGAAAACAGTTTTATACTCCCAACGTTGCAGCTTTTCAAAATGCGGATGACTCTTGCATCTGTGCGATTTGCCTTGATACTATACAACCAGAAGAGACTGCTCAGATAAAAGGGTGTGGGCACAATTACTGCGTTTCATGCATCCTTCGATGGGCTTCTTACGTGGACAATCCTTGGTGCCCTCAATGCAAGCACCGTTTCTCCTCTCTGTATGTGTACAGAGCAATAGATGGGAGTATGCATGATTACATGGTTGAAGAAAGCATATGCCTGCTGTTGCGAGCACCATGGTTTGAGCTTTTTCCACCCCAGGAGGCATATGATGAACAAGATGATTACCCATACGAAGATGAGATTGACGAGGAATACTATGGCACATCAAATATTCGTTTAGGGAATCGACGTTGGGGTGATTCCGGGTATGTGAGAGCAGGTCGTAAAGAGGCTAGACCGGTAGGAGCTCGTGGCCATGGAACTAATCATGAGGCAGGTGGTTCATCGGCAAGGGCAAGCAAAGGAAAAGAAGTATCAAAAGAAGCAGTTGGAAGGCGAGCCTTGAGAGCACAGAAGCGTGAGGCTGCAGATAAGGCTGCTGCAGCAAAGCACCAGAAACACTTACAGAAGCTAGGTCGTAAGGCTTTCTAG___AAATACTTTTAGGATGAACAAACATTATTTTGTTATGTTCATGTTCTAAAGGTTTTCTTTCTTTCTCAAGGTGCCAGGATGCCTACTGTAGTATTCTTTTTTGTCCTTAACGTCTAGAGTTCAAGACTCAATCATCCTTCTATGTATATGATTTCTTATGTTCATACTTCATTTCTCATCTGTTAGTTTGTGCAACTTTTACTACATTGTTTAAGATCAAGACTAAAATTAATTAAGTTGGATTTAACCTTTTGCTAAGTTT

Fln Alignment:

sp_v1.1_unigene8118___MEGVLDMDKSFITSLDNSYACSSNAAAGKTVQDEGKQFYTPNVAAFQNADDSCICAICLDTIQPEETAQIKGCGHNYCVSCILRWASYVDNPWCPQCKHRFSSLYVYRAIDGSMHDYMVEESICLLLRAPWFELFPPQEAXXXXXXXXXXXXXXXXXYGTSNIRLGNRRWGDSGYVRAGRKEARPVGAR-GHGTNHEAGGSSARASKGKEVSKEAVGRRA
A9NND1______________MEGILDMDKCLITPTDNSYACSSNAVACETVQDEEKQSNTPKVAALLDADDSWLCAICLDTIQPEETAQIKGCGHNYCVTCILRWASYVANPWCPQCKHSFSSLFVYRALDGSMHDYMLEESICLLLRASWFELLPLQEAYDEQDDYPYEDEIDEEYYGTSNVRLGNRRWGDSGYVRAGRKEARPVGTRQGHGANHEAGGSSARASKGKEVSKDAGGRRA

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
456		96		3	0.993591
460		96	3		0.993591
461	3			96	0.993591
466	3			96	0.993591
467	3	96			0.993591
468			3	96	0.993591
469			3	96	0.993591
476		94	3		0.964041
492	2		91	6	0.999993
495	91		8		1.0
497		93	6		0.999999
500	6	91	2		0.999996
505		93	6		0.999999
511		6		93	0.999999
512			6	93	0.999999
513	6	93			0.999999
515		92	7		0.999999
547	5			94	0.997984
664		12		87	0.992554
675		85		14	0.993533
677	14	85			0.993533
679	14			85	0.993533
680	14	85			0.993533
681	16			83	0.994512
683	16			83	0.994512
702	25	75			0.996473
793		87		12	0.992554
985		12		87	0.992554
1084			18	81	0.999994
1149		90		10	0.90298
1186		82	17		1.0
1279	93		6		0.999264
1280	93			6	0.999264
1281		87	6		0.993531
1282	6	93			0.999264
1291	6		3	90	0.997952
1293	3		6	90	0.997952
1294		3	6	90	0.997952
1300	93	6			0.999364
1301	90		10		1.0
1344	58		4	37	1.0
1354		91	8		0.999807
1355	8	4		86	0.999539
1361		14		85	1.0
1365	4		9	80	0.999537
1367		10	90		0.999898
1368	10			90	0.999898
1369		10		90	0.999898
1372	90	10			0.999898
1373	90		10		0.999898
1415	11		88		0.999952
1432	14	14		71	0.984337
1433		16		83	0.994512
1434		16		83	0.994512
1435		16		83	0.994512
1436	16			83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
197	209	AGAA AGAA AGAA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain