SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8107

Length: 2081 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8107
ATGGGGGTTCTTATGAATGGTAAAATTTTGGGTCCCTCTTCCTCATTCATCGGCGTTTTACACTTCCTTCTAAGGTTCACTTTTCGCTGTAAATTTTCGTCACGGCCATTGCAGATCTGTTTTGTTAGGGGAGAGGTGACAATGTGGGTTCGGAATGAACGAATTTTCTTTGTATATGATGTTTTCCTAGTTCAGAGATTGCAAGTCCCAGGTTTGTAGAGTGAAGGTGTATCAATTACCATGCTGTGTTGTTGGGTCTGCATTGAAAGCTCACAGAATGTTGACGAGGTCTGTTGTTGGAGAGACGATGAAGTACATCATTGGGAAGGATGTTCGGAAAATGCTCAAGCGAAAAGACAGCGATGCTGGAGAACGCGGGCGGGCCTTGGAAGAATTGCGGACATCTGTATTCAGTGAGCTTCGTACTTCAGAAGGAGCAAAGCGACTGCAACAAAGATTTTGCGGCCCAGAAGTTGCTTTGACTTTCAATTTCATGGTTGCTGTTAGCATCATTATGATGAACAAATTGTTGCTTGGGAAGGTTGGATTTAACTACCCTATCTTTCTCACACTAATCCACTATGCAATAAGCTGGCTTTTATTGGCTTCCCTCAACGCATGTGCTCTGCTTCCTGCATCACCCCCAGCAAAGGCAACACCATTTGCTTCTCTGATTTCCTTGGGTGTGATCATGGCATTCTCCAATGGCCTTGCAAATGTCAGTTTAAAGTTCAACAGTGTGGGTTTTTATCAGATGGCCAAAATTGCTGTTACGCCTACAATTGTGCTGTCAGAGTTTCTGTTCTTTGGGAAGAGAGTTTCTTTCCAGAAGGTTCTGGCATTGGCAGTTGTTTCTGTAGGAGTGGCTATTGCAACGGTCACGGACTTGCAATTTAATCTATTTGGTGCTTTGATAGCTTTAACATGGATAATACCAAGTGCAGCAAACAAAATTTTATGGTCAAATCTCCAACAACAAGACAATTGGACTGCACTTGCATTGATGTGGAAAACAACGCCCATAACCATCTTCACTTTGGTGGCTATAATGCCATGGCTAGATCCTCCTGGTTTACTAGCTTTTAATTGGAATGTCTCCAATGTGCTGGCTATTATTTTTTCTGCTACACTGGGATTTTTGCTACAGTGGTCTGGTGCTTTAGCACTTGGGGCCACTTCTGCCACTACCCATGTTGTTCTTGGACAGTTCAAGACCTGTGTTATTCTTCTGGGAGGCTTTCTCCTTTTTCAGTCTAATCCTGGGATGTCAAGCATTGGCGGAGCAGCGGTGGCTCTAGGAGCAATGTCCGTTTACACCTACCTTAATCTGAAAGAAACATGGGAACCTGTGGGAAAGCCCCTGGTTCCTAAACAAAATTCAATTTCTTCCCTAAAAGGAAAAGTTAGCAAAGCTAATGACAATAGCCATGATGGAAATGAAGGTGCAGAGTTTGTGTGACTGAAACTTTTCAAAAATTTCCTGAAAGCAGAAATGGTTTGCACTATGTGCGGAGGAGCTGATACTAGTGATGAGTATTCAAAGATTCACAANTTTGTTAAAACTGTTAGAAGTAGATCTTATTTCAGAAATGCCCTGCTCAAGTCTAGGACCGCATTCCTCTTGCTTCCATTTAATCCAGAAATTCTCCCTCAAATTCTTCTGCAATTTGAAAGATTATTGGTATCCTCCATCTCAAGTTTCATATTTGTCTTTCCTTAGTGTTGTAGTTATTGCCTTTGGTGTTTAGAGGATGCCTTACAAATGCAGTCAAATTTACAAACCATCTTGCTCTGAACTGTAATTAGTGATGACTAGTCGAAGTCACTTGTAAATTAGCTTATTCTTGTCTTAATAACATCACATTGTTATTAACATTTTTTGAGGAGGTCAGGTGCAGGCATGTTTACAGAACTTACTAGAGATTGGGATATTAGAGTCCTTGGGGCTTCTGTGCCTGTACTGCTTATACCAACAAAATTCAAATCGAGACAGTCTTGATTATAAATTTTATTTGTTACAACAATAGTTCAGAGTGAAACTAATCTCTGACAATAACCCATTTCGGTCCTTTCCACTATAA

Ace file of the UniGene sp_v1.1_unigene8107

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	organic anion transporter, putative	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	organic anion	-	-	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF250	IPR004853	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSL8

Fln msg:

Fln protein: MLTRSVVGETMKYIIGKDVRKMLKRKDSDAGERGRALEELRTSVFSELRTSEGAKRLQQRFCGPEVALTFNFMVAVSIIMMNKLLLGKVGFNYPIFLTLIHYAISWLLLASLNACALLPASPPAKATPFASLISLGVIMAFSNGLANVSLKFNSVGFYQMAKIAVTPTIVLSEFLFFGKRVSFQKVLALAVVSVGVAIATVTDLQFNLFGALIALTWIIPSAANKILWSNLQQQDNWTALALMWKTTPITIFTLVAIMPWLDPPGLLAFNWNVSNVLAIIFSATLGFLLQWSGALALGATSATTHVVLGQFKTCVILLGGFLLFQSNPGMSSIGGAAVALGAMSVYTYLNLKETWEPVGKPLVPKQNSISSLKGKVSKANDNSHDGNEGAEFV*

Protein Length: 395

Fln nts: ATGGGGGTTCTTATGAATGGTAAAATTTTGGGTCCCTCTTCCTCATTCATCGGCGTTTTACACTTCCTTCTAAGGTTCACTTTTCGCTGTAAATTTTCGTCACGGCCATTGCAGATCTGTTTTGTTAGGGGAGAGGTGACAATGTGGGTTCGGAATGAACGAATTTTCTTTGTATATGATGTTTTCCTAGTTCAGAGATTGCAAGTCCCAGGTTTGTAGAGTGAAGGTGTATCAATTACCATGCTGTGTTGTTGGGTCTGCATTGAAAGCTCACAGA_-_ATGTTGACGAGGTCTGTTGTTGGAGAGACGATGAAGTACATCATTGGGAAGGATGTTCGGAAAATGCTCAAGCGAAAAGACAGCGATGCTGGAGAACGCGGGCGGGCCTTGGAAGAATTGCGGACATCTGTATTCAGTGAGCTTCGTACTTCAGAAGGAGCAAAGCGACTGCAACAAAGATTTTGCGGCCCAGAAGTTGCTTTGACTTTCAATTTCATGGTTGCTGTTAGCATCATTATGATGAACAAATTGTTGCTTGGGAAGGTTGGATTTAACTACCCTATCTTTCTCACACTAATCCACTATGCAATAAGCTGGCTTTTATTGGCTTCCCTCAACGCATGTGCTCTGCTTCCTGCATCACCCCCAGCAAAGGCAACACCATTTGCTTCTCTGATTTCCTTGGGTGTGATCATGGCATTCTCCAATGGCCTTGCAAATGTCAGTTTAAAGTTCAACAGTGTGGGTTTTTATCAGATGGCCAAAATTGCTGTTACGCCTACAATTGTGCTGTCAGAGTTTCTGTTCTTTGGGAAGAGAGTTTCTTTCCAGAAGGTTCTGGCATTGGCAGTTGTTTCTGTAGGAGTGGCTATTGCAACGGTCACGGACTTGCAATTTAATCTATTTGGTGCTTTGATAGCTTTAACATGGATAATACCAAGTGCAGCAAACAAAATTTTATGGTCAAATCTCCAACAACAAGACAATTGGACTGCACTTGCATTGATGTGGAAAACAACGCCCATAACCATCTTCACTTTGGTGGCTATAATGCCATGGCTAGATCCTCCTGGTTTACTAGCTTTTAATTGGAATGTCTCCAATGTGCTGGCTATTATTTTTTCTGCTACACTGGGATTTTTGCTACAGTGGTCTGGTGCTTTAGCACTTGGGGCCACTTCTGCCACTACCCATGTTGTTCTTGGACAGTTCAAGACCTGTGTTATTCTTCTGGGAGGCTTTCTCCTTTTTCAGTCTAATCCTGGGATGTCAAGCATTGGCGGAGCAGCGGTGGCTCTAGGAGCAATGTCCGTTTACACCTACCTTAATCTGAAAGAAACATGGGAACCTGTGGGAAAGCCCCTGGTTCCTAAACAAAATTCAATTTCTTCCCTAAAAGGAAAAGTTAGCAAAGCTAATGACAATAGCCATGATGGAAATGAAGGTGCAGAGTTTGTGTGA___CTGAAACTTTTCAAAAATTTCCTGAAAGCAGAAATGGTTTGCACTATGTGCGGAGGAGCTGATACTAGTGATGAGTATTCAAAGATTCACAAaTTTGTTAAAACTGTTAGAAGTAGATCTTATTTCAGAAATGCCCTGCTCAAGTCTAGGACCGCATTCCTCTTGCTTCCATTTAATCCAGAAATTCTCCCTCAAATTCTTCTGCAATTTGAAAGATTATTGGTATCCTCCATCTCAAGTTTCATATTTGTCTTTCCTTAGTGTTGTAGTTATTGCCTTTGGTGTTTAGAGGATGCCTTACAAATGCAGTCAAATTTACAAACCATCTTGCTCTGAACTGTAATTAGTGATGACTAGTCGAAGTCACTTGTAAATTAGCTTATTCTTGTCTTAATAACATCACATTGTTATTAACATTTTTTGAGGAGGTCAGGTGCAGGCATGTTTACAGAACTTACTAGAGATTGGGATATTAGAGTCCTTGGGGCTTCTGTGCCTGTACTGCTTATACCAACAAAATTCAAATCGAGACAGTCTTGATTATAAATTTTATTTGTTACAACAATAGTTCAGAGTGAAACTAATCTCTGACAATAACCCATTTCGGTCCTTTCCACTATAA

Fln Alignment:

sp_v1.1_unigene8107___MLTRSVVGETMKYIIGKDVRKMLKRKDSDAGERGRALEELRTSVFSELRTSEGAKRLQQRFCGPEVALTFNFMVAVSIIMMNKLLLGKVGFNYPIFLTLIHYAIXXXXXXXXXXXXXXXXXXXXXXTPFASLISLGVIMAFSNGLANVSLKFNSVGFYQMAKIAVTPTIVLSEFLFFGKRVSFQKXXXXXXXXXXXXXXTVTDLQFNLFGALIALTWIIPSAANKILWSNLQQQDNWTALALMWKTTPITIFTLVAIMPWLDPPGLLAFNWNVSNVLAIIFSATLGFLLQWXXXXXXXXXXXXXHVVLGQFKTCVILLGGFLLFQSNPGMSSIGGAAVALGAMSVYTYLNLKETWEPVGKPLVPKQNSISSLKGKVSKANDNSHDGNEGAE
C0PSL8______________MLTRSVVGETMKYIIGKDVRKMLKRKDSDAGERGRALEELRTSLFSELRTSEGAKRMQQRFCGPEVALTFNFMVAVSIIMMNKLLLGKVGFNYPIFLTLIHYALSWLLLASLNACALLPASPPAKATPFTSLISLGVVMAFSNGLANVSLKYNSVGFYQMAKIAVTPTIVLSEFLFFGKRVSFQKVLALTVVSLGVAVATVTDLQFNLFGALVALAWIVPSAANKILWSNLQQQDNWTALALMWKTTPITIFTLVAVMPWLDPPGLLSFNWNISNVLAIIFSATLGFLLQWSGALALGATSATTHVVLGQFKTCVILLGGFLLFQSNPGMSSIGGAAVALGAMSVYTYLNLIEASESVGKPLVLKQNSFSSVKGKVSKANDNSHDGNEGAE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
539		16	83		0.999991
605	10			90	0.90298
1244		57		42	1.0
1555		66	33		1.0
1668	85		14		0.993533
1784	88		4		0.999262
1902		52	47		1.0
1934	89		10		0.999919
2005	60		40		1.0
2009	88	11			0.923564
2044			60	40	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain