SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8099

Length: 2240 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8099
CGTCGTGACCTTGGCTGTCAGTGAACATTGGGGGCATTGTGAATGGACAACGGCTAGGAGGCAGCCCTAATGGGTAGTCCAGTTAGGGATGAATTCCTAGTCGAGTTTCTGACCCTTTGTCATGAGGGTAGGGGTTAATTTTCATAAGATCCATCTGGGTTAGGTTTTGATAGTTGAGTGGACTGGGCGTGTAGCCCCTCTGGGTAGGCCCGCCTAGGGGTGTTGCTAGAAAAAAGGAAAAGCGTGGTTGAAAATCCATAATGGTGGGCGTTGTCTCTTGAAACCCTTGGTATCTATGAGTCCCTTGAGCCCCCTGGCTTGATTGCACAAGTCATGGGTGGTTAAGTGTCCGTTTACAACTTTAGACCTGGCGCTCAAGGCCCTGAGGTAACGACCAAATCACGAGGAGGAGGAATCTCCGGGAATATTATGCAAGGGAGAGGGGCGAGCTTCTCCATATAACAAGTGTTTGCTACTCTATATAAACCCACACCCTAACCCCTACATAGCATAGCATTTCACTCCATTCACTTCATTCCTTTGCAGTTGCACTGCTCCAGTTTCATCTTCATCCGCGAAGAAGAAGCAATGGCAGGTCCTGCTCTCACACCGATCCTGAAGGATGAGCTTGATATCGTGATACCCACGATCAGGAACCTGGATTTTCTAGAAATGTGGAGGCCTTTCTTTGAGCAATATCATCTTATTATTGTGCAGGATGGGGATCCATCAAAGACAATCGCTGTGCCAAAGGGTTTTGACTATGAGCTTTACAATAGAAATGACATCAACAGGATCCTCGGCCCGAAAGCCTCCTGCATTTCTTTTAAGGACAGTGCTTGCCGATGCTTCGGATATATGGTCTCAAAGAAAAAATATATCTACACAATTGACGATGATTGTTTTGTTGCAAAGGATCCGTCTGGGAAGGACATCAATGCTCTAGAGCAGCATATTAAGAATTTGCTGTCACCGTCAACGCCATTCTTTTTCAATACCCTGTATGATCCATACAGAGATGGTGCAGACTTTGTTCGCGGCTACCCCTTCAGTCTTCGTCACGGAATATCCACTGCTGTTTCCCATGGCCTTTGGATGAACATCCCCGATTATGATGCCCCTACTCAACTTGTGAAGCCCTTGGAACGAAACACGAGGTATGTTGATGCGGTGTTAACAATTCCTAAGGGTACTCTGTTCCCTATGTGTGGGATGAATTTGGCCTTTGATCGAGAGTTGATAGGCCCTGCAATGTACTTTGGATTGATGGGCGATGGTCAGCCTATTGGTCGCTACGACGACATGTGGGCAGGATGGTGTGTAAAGGTAATTTGTGACCACCTAGGCTTGGGTGTGAAGACAGGACTTCCTTACATTTGGCACAGCAAAGCTAGTAACCCTTTCGTTAATTTGAAGAAAGAGTACAAGGGGATCTTTTGGCAAGAGGAGATAATTCCATTTTTCCAATCTGCTACCCTCCCTAAGGAATGCACCTCTGTGCAACAATGCTACATTGAATTATCAAAGCAAGTGAAGGAAAGTCTTGGGAAAGTCGATCCGTATTTCCAGAAGCTAGCGGATGCCATGGTAACATGGATTGAGGCTTGGGATGAGCTCAATCCTACCACAAGCAATGCTGAATCTGCTGCTCCTAATGGAGCAGCTAAGTGAGCCAAGTAGCTAGCGTGATCCAGATTAAATTTCATTTATGAACTCTGAAGAATATCTATTTTCTAGTTTATGTTATTTTTTTGTAGATGAATACATTTCTTGCAGTTCAGCGGTAGTGATTAGTTTGTTATTTATTCAGTTACAGAATAGCTGAGCCTAGGTTTTGACATCAATAGAGGCATTTGATGGAGTGGGGGCATATTTGAGAATTTGGATGCAGTAGCATGCCTGTATTGAGCTTTTACCTTCATGGATCTGTCACTGATATTGGGTTTATGTTAACTCATTTTTTATGATGAGATTTATTGCTGCTATGGATCTTGCATGAGTATGATGAATCTTGAATTTTTGTAAAAGCAAATGATTTTCATTCTAACAACAGACTGTAAAAGCGAATCTTACTTCAGATCTTGGATAAATGTGATGAAACTTGTGATAAGTGCTGGGGCATATTTGAGAATTTACATGCACTAGCATCCCTGTATTGAGCTTTTACCTTAATGGATCTGTCTCTGCTTATTGGGTTTATGTTAACTGATTTTTTTATGATGAGATTTATTGTTGACCGT

Ace file of the UniGene sp_v1.1_unigene8099

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-1,4-glucan-protein synthase [UDP-forming], putative (EC:2.4.1.186); K13379 reversibly glycosylated polypeptide/UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.-]	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	alpha- -glucan-protein synthase	-	-	95%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	91%

Source	KEGGs	Term	Type	Identity
AutoFact	Fructose and mannose metabolism	00051		91%
AutoFact	N-Glycan biosynthesis	00510		91%
AutoFact	Mucin type O-Glycan biosynthesis	00512		91%
AutoFact	Various types of N-glycan biosynthesis	00513		91%
AutoFact	Other types of O-glycan biosynthesis	00514		91%
AutoFact	Biosynthesis of 12-, 14- and 16-membered macrolides	00522		91%
AutoFact	Glycosaminoglycan biosynthesis - keratan sulfate	00533		91%
AutoFact	Lipopolysaccharide biosynthesis	00540		91%
AutoFact	Peptidoglycan biosynthesis	00550		91%
AutoFact	Glycerolipid metabolism	00561		91%
AutoFact	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563		91%
AutoFact	Sphingolipid metabolism	00600		91%
AutoFact	Glycosphingolipid biosynthesis - lacto and neolacto series	00601		91%
AutoFact	Glycosphingolipid biosynthesis - globo series	00603		91%
AutoFact	Glycosphingolipid biosynthesis - ganglio series	00604		91%
AutoFact	Carotenoid biosynthesis	00906		91%
AutoFact	Zeatin biosynthesis	00908		91%
AutoFact	Flavonoid biosynthesis	00941		91%
AutoFact	Anthocyanin biosynthesis	00942		91%
AutoFact	Flavone and flavonol biosynthesis	00944		91%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		91%
AutoFact	Betalain biosynthesis	00965		91%
AutoFact	Biosynthesis of type II polyketide products	01057		91%
AutoFact	Metabolic pathways	01100		91%
AutoFact	Biosynthesis of secondary metabolites	01110		91%
AutoFact	Isomerases, Intramolecular transferases (mutases), Transferring other groups.	EC:5.4.99.-	-	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alpha-1,4-glucan-protein synthase, UDP-forming	IPR004901	-	0.0	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKS5

Fln msg:

Fln protein: MAGPALTPILKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKTIAVPKGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLRHGISTAVSHGLWMNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSATLPKECTSVQQCYIELSKQVKESLGKVDPYFQKLADAMVTWIEAWDELNPTTSNAESAAPNGAAK*

Protein Length: 362

Fln nts: CGTCGTGACCTTGGCTGTCAGTGAACATTGGGGGCATTGTGAATGGACAACGGCTAGGAGGCAGCCCTAATGGGTAGTCCAGTTAGGGATGAATTCCTAGTCGAGTTTCTGACCCTTTGTCATGAGGGTAGGGGTTAATTTTCATAAGATCCATCTGGGTTAGGTTTTGATAGTTGAGTGGACTGGGCGTGTAGCCCCTCTGGGTAGGCCCGCCTAGGGGTGTTGCTAGAAAAAAGGAAAAGCGTGGTTGAAAATCCATAATGGTGGGCGTTGTCTCTTGAAACCCTTGGTATCTATGAGTCCCTTGAGCCCCCTGGCTTGATTGCACAAGTCATGGGTGGTTAAGTGTCCGTTTACAACTTTAGACCTGGCGCTCAAGGCCCTGAGGTAACGACCAAATCACGAGGAGGAGGAATCTCCGGGAATATTATGCAAGGGAGAGGGGCGAGCTTCTCCATATAACAAGTGTTTGCTACTCTATATAAACCCACACCCTAACCCCTACATAGCATAGCATTTCACTCCATTCACTTCATTCCTTTGCAGTTGCACTGCTCCAGTTTCATCTTCATCCGCGAAGAAGAAGCA_-_ATGGCAGGTCCTGCTCTCACACCGATCCTGAAGGATGAGCTTGATATCGTGATACCCACGATCAGGAACCTGGATTTTCTAGAAATGTGGAGGCCTTTCTTTGAGCAATATCATCTTATTATTGTGCAGGATGGGGATCCATCAAAGACAATCGCTGTGCCAAAGGGTTTTGACTATGAGCTTTACAATAGAAATGACATCAACAGGATCCTCGGCCCGAAAGCCTCCTGCATTTCTTTTAAGGACAGTGCTTGCCGATGCTTCGGATATATGGTCTCAAAGAAAAAATATATCTACACAATTGACGATGATTGTTTTGTTGCAAAGGATCCGTCTGGGAAGGACATCAATGCTCTAGAGCAGCATATTAAGAATTTGCTGTCACCGTCAACGCCATTCTTTTTCAATACCCTGTATGATCCATACAGAGATGGTGCAGACTTTGTTCGCGGCTACCCCTTCAGTCTTCGTCACGGAATATCCACTGCTGTTTCCCATGGCCTTTGGATGAACATCCCCGATTATGATGCCCCTACTCAACTTGTGAAGCCCTTGGAACGAAACACGAGGTATGTTGATGCGGTGTTAACAATTCCTAAGGGTACTCTGTTCCCTATGTGTGGGATGAATTTGGCCTTTGATCGAGAGTTGATAGGCCCTGCAATGTACTTTGGATTGATGGGCGATGGTCAGCCTATTGGTCGCTACGACGACATGTGGGCAGGATGGTGTGTAAAGGTAATTTGTGACCACCTAGGCTTGGGTGTGAAGACAGGACTTCCTTACATTTGGCACAGCAAAGCTAGTAACCCTTTCGTTAATTTGAAGAAAGAGTACAAGGGGATCTTTTGGCAAGAGGAGATAATTCCATTTTTCCAATCTGCTACCCTCCCTAAGGAATGCACCTCTGTGCAACAATGCTACATTGAATTATCAAAGCAAGTGAAGGAAAGTCTTGGGAAAGTCGATCCGTATTTCCAGAAGCTAGCGGATGCCATGGTAACATGGATTGAGGCTTGGGATGAGCTCAATCCTACCACAAGCAATGCTGAATCTGCTGCTCCTAATGGAGCAGCTAAGTGA___GCCAAGTAGCTAGCGTGATCCAGATTAAATTTCATTTATGAACTCTGAAGAATATCTATTTTCTAGTTTATGTTATTTTTTTGTAGATGAATACATTTCTTGCAGTTCAGCGGTAGTGATTAGTTTGTTATTTATTCAGTTACAGAATAGCTGAGCCTAGGTTTTGACATCAATAGAGGCATTTGATGGAGTGGGGGCATATTTGAGAATTTGGATGCAGTAGCATGCCTGTATTGAGCTTTTACCTTCATGGATCTGTCACTGATATTGGGTTTATGTTAACTCATTTTTTATGATGAGATTTATTGCTGCTATGGATCTTGCATGAGTATGATGAATCTTGAATTTTTGTAAAAGCAAATGATTTTCATTCTAACAACAGACTGTAAAAGCGAATCTTACTTCAGATCTTGGATAAATGTGATGAAACTTGTGATAAGTGCTGGGGCATATTTGAGAATTTACATGCACTAGCATCCCTGTATTGAGCTTTTACCTTAATGGATCTGTCTCTGCTTATTGGGTTTATGTTAACTGATTTTTTTATGATGAGATTTATTGTTGACCGT

Fln Alignment:

sp_v1.1_unigene8099___MAGPALTPILKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKTIAVPKGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLRHGISTAVSHGLWMNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSATLPKECTSVQQCYIELSKQVKESLGKVDPYFQKLADAMVTWIEAWDELNPTTSN
A9NKS5______________MAGPAPTPILKDELDIVIPTIRNLDFLEMWRPFFEAYHLIIVQDGDPSKIISVPKGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVFTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLRHGTPTAVSHGLWMNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSATLPKECTSVQQCYIELSKQVKESLGKVDPYFQKLADAMVTWIEAWDELNPTASN

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
260		50	50		1.0
261		50	50		1.0
262	75		25		0.996473
263		50	25	25	0.995533
349	80		20		0.995493
1200			6	93	0.999453
1619	98		2		0.997531
1736		0		96	0.999959
1836		1		91	1.0
1975		4		95	0.995055
1986			92	7	0.999999
1989	5		94		0.998578
1993	14			78	0.999974
2178	90	10			0.90298
2209	33			66	0.997452
2213	33	66			0.997452
2214	33			66	0.997452
2215		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain