SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8095

Length: 1590 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8095 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 2, putative n=1 Tax=Ricinus communis RepID=B9SCJ0_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	xyloglucan endo-transglycosylase	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	77%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	77%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	77%
Blast2go	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	77%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	77%
Blast2go	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9H8

Fln msg: your sequence is longer than subject: 329 - 193

Fln protein: MGTSSQYSSSAFLQPRSCMNIIAVLIIFTLLNSIIPVHGESEKHIPVTSKFQTINFYNGFSNLWGPQHQQVSEDESSTTIWLDSSSGSGFKSLEAYKSGFFSAAIKLQAGYTAGVIAALYLSNNQEYPGHHDEIDIEFLGTTPGKPYTLQTNVYINGTGDGQVLTGRELKFHLWFDPTEDFHNYSLLWTPSYIIFYVDDIAIRKYPRRISSTYPLRPLWVYGSIWDASSWATENGKYRADYRYQPFVAKFSKFILSGCPVSDSTCSATFSNSLISTGTGGLTSQERSRMKSIQRNNLVYNYCKDRERYPTRLPECGKRYAPSLINGND*

Protein Length: 330

Fln nts: ACTAGAAGGATTGATTATGTTCAGGGGTATGAACTGTACCAAGACATTGTAGATTGCACAATTTTCTTTGATTGATGTGACCCTTCTCTTCCTTTCTCTTCTATTTATTTACAGTTTGCCATACGTAGTAcagtACTGCTTCAGTACCTTCACTCTTCCAAGCTTGTGAGCTGTTTTTCACC_-_ATGGGCACATCCTCACAGTATAGTAGCTCAGCCTTTCTGCAACCCAGATCCTGTATGAATATTATAGCTGTTCTCATAATATTCACTCTTCTAAATTCCATTATCCCTGTACATGGAGAGTCTGAGAAGCACATTCCTGTGACCTCCAAGTTCCAGACCATAAACTTTTATAATGGCTTTTCTAATCTCTGGGGTCCTCAGCATCAGCAAGTGTCAGAGGATGAGTCCTCTACCACAATTTGGCTTGACAGCTCTTCAGGTAGTGGATTCAAGTCTTTGGAGGCCTATAAGTCCGGATTCTTCAGTGCTGCTATTAAGCTACAGGCAGGTTATACAGCTGGAGTCATCGCAGCTCTCTATCTCTCCAATAACCAGGAGTACCCAGGTCACCATGACGAAATAGACATTGAGTTCCTGGGGACAACACCAGGAAAACCCTACACCTTACAGACCAATGTTTACATAAATGGAACAGGGGATGGGCAGGTTCTCACAGGCAGGGAGTTGAAGTTTCATCTCTGGTTTGACCCAACTGAAGACTTCCATAACTACAGCCTTCTCTGGACTCCAAGTTATATCATCTTCTATGTAGATGATATTGCTATCCGAAAGTACCCAAGAAGAATTTCATCTACTTATCCATTGAGGCCACTTTGGGTATATGGATCAATATGGGATGCTTCCTCTTGGGCTACTGAAAATGGCAAATACAGAGCAGATTACAGATATCAGCCATTTGTTGCTAAGTTCTCTAAGTTCATTCTCAGTGGCTGCCCTGTTTCAGACTCCACATGCTCAGCCACATTCTCCAATTCTCTCATTTCAACTGGAACAGGAGGCCTAACGAGCCAAGAAAGATCGAGGATGAAGTCGATTCAGAGAAACAATTTGGTTTACAACTACTGCAAGGACCGAGAACGCTATCCCACTCGCCTGCCTGAGTGTGGGAAACGCTATGCTCCCAGCCTAATTAATGGGAATGATTAA___ACACATAATCACCACTTGATTATCAAGATGGTTCCCTAGATATAAATTTGTGAGAGACTAGAGTTTGAATCTTGAAAACCAGTCTCTGTTTATTTATGGCCATCTATAATATAGGCCATTGAAGAGTGCTTCTGTATGGGTGTGTAAGGAAATTTCCATTGCAGCTGGTGAAATAAATTTGCAGGTCATGGAGTACAGATGCCCAAAGCTCCATAGGAGTTGGGTTGAAATAGTTGATTTCCTTATTGTTGGTAATTGCTTGGAGGGCTATGTAAAACTTGTCCGGTGATGTGTTCAGTGCATGAAATCATGGCCCTTTGTCACAGCTAGATTTATATACCAACTTCTCAGATTTAAATAAAAATGAATGCTTTATGTCCAGAAGATTCTCTAAATACAGATCTAAGTATGGTTTAAAACC

Fln Alignment:

sp_v1.1_unigene8095___IEFLGTTPGKPYTLQTNVYINGTGDGQVLTGRELKFHLWFDPTEDFHNYSLLWTPSYIIFYVDDIAIRKYPRRISSTYPLRPLWVYGSIWDASSWATENGKYRADYRYQPFVAKFSKFILSGCPVSDSTCSATFSNSLISTGTGGLTSQERSRMKSIQRNNLVYNYCKDRERYPTRLPECGKRYAPSLINGND
D5A9H8______________MEFLGTTPGKPYTLQTNVYINGTGDAQVLTGRELKFHLWFDPTEDFHNYSILWTPTYIIFYVDDIAIRKYPRRVSSTYPLRPLWVYGTIWDASSWATENGKYRADYRYQPFVAKFSRFILSGCPAPDSTCSAAFSDSLISTGTGGLTSQERTRMKSIQRNNLVYNYCKDRERYPTRLPECGKRYAPTLIDWND

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1338	88	11			0.923564
1341			88	11	0.923564
1360	85		14		0.993533
1413	50		50		1.0
1419	83		16		0.994512
1457		66	33		0.997452
1458		66		33	0.997452
1459		66	33		0.997452
1460	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain