SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8092

Length: 1375 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8092

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NRPB5; NRPB5; DNA binding / DNA-directed RNA polymerase; K03013 DNA-directed RNA polymerase II subunit E	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	86%
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	RNA polymerase, subunit H/Rpb5 C-terminal	IPR000783	-	86%
Blast2go	RNA polymerase, Rpb5, N-terminal	IPR005571	-	86%
Blast2go	DNA-directed RNA polymerase, RPB5 subunit	IPR014381	-	86%
Blast2go	RNA polymerase, subunit H/Rpb5, conserved site	IPR020608	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR68

Fln msg:

Fln protein: MALDEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNNPSEQLFVFFPEEAKVGVKTIKTYVERMKSEGVFRAILVVQQALTPFARQSLQEFSGKFHLEVFQEAELLVNIKEHVLVPEHQILTPEEKKTLLERYTLKETQLPRMQESDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV*

Protein Length: 207

Fln nts: GGCGAGATTGGTGTTATAGCTTTCTTACTTGTTTACCTTGTGTAGTGAATGAATGAGATTTGAATTAATGAGATTTTAAGATCCACCGATTCGGATGATTAAAATCTGTTTGAACAATTCGAGTCAAATCAGCGTATCGGAAGATTAATTTCCTTGTTCTGCGAGTCTTTGAGTGCAAAAGGTTCCATTTGAGAATTCCATAAAAGGGTTCTCCATAAAACGGGTTTGGGTTAACAACTCCACTTTGAAGGCGACGGAATTAAGCTGAGCAGCTCGCA_-_ATGGCGCTGGATGAGCAGACAAACAAGCTCTTTAGAATCCGACGTACAGTTCTTCAGATGCTCAATGACAGAGATTATCTCGTGGGTGATTTTGAGATCAACACGACCAAAGAGCAGTTCCTGGATAAGTTCGGAGAAGACCCAAAGAAGGAAGATCTTGTTATCAATAAAGCCAAGCGCAACAATCCTTCAGAACAGTTATTCGTCTTCTTTCCGGAAGAGGCGAAAGTGGGAGTGAAGACGATCAAAACATATGTGGAACGTATGAAATCTGAGGGTGTGTTTCGAGCTATATTGGTGGTGCAGCAGGCCTTGACACCTTTTGCAAGGCAGAGTCTCCAAGAGTTCTCGGGAAAATTTCATTTGGAAGTATTCCAGGAGGCAGAGTTGCTTGTTAACATAAAGGAACATGTTCTTGTGCCAGAGCACCAAATACTCACTCCTGAAGAGAAGAAGACATTATTGGAGAGATATACTCTGAAAGAAACACAGCTTCCACGAATGCAAGAGTCTGATCCTGTTGCACGGTATTATGGGCTCAAGCGTGGTCAAGTTGTTAAGATTATCCGACCTAGTGAGACGGCTGGAAGATATGTGACTTACCGTTATGTTGTTTAA___ATCTAGTTTGAACATGATCAAAGTTTTAACATTTTGAATGACTGGTACTTTGGCTAAATAAACTCTTTTAGCCACTTTGGAGCCTTGTAACAGTGCTAATGATGAAAACTGTTGAATGGATGTGTTTTTGTATTATAGTTCCATAAGCCAGCCAGTCTAGGCAGGATTGAGGCTTAAACTATAAACTTCATTAATTTATTTCTTATTGCAAGTGCTGCAATTATGGAATCTGAGTAAAATTGTGAAAGACAGGTGAACTGATGGCCATTATGCCACATCTCTCTGGCCTGTTTAATGCTTCTCATCTTCCATCAGTCATATGTGATTTCATTCCATCATTTTTAGTTTGGTGAAATTTGAAAAAGTGCTGTATCATTCTGTAGATGCGATTTGAAGTATATGATTTCCATCCATACAGCGTACCTATACATTGCTTTTTACATGGACTAATTTATTGGTTCTGGAATAAATACAATTGA

Fln Alignment:

sp_v1.1_unigene8092___MALDEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNNPSEQLFVFFPEEAKVGVKTIKTYVERMKSEGVFRAILVVQQALTPFARQSLQEFSGKFHLEVFQEAELLVNIKEHVLVPEHQILTPEEKKTLLERYTLKETQLPRMQESDPVARYYGLKRGQVVKIIRPSETAG
B8LR68______________MALDEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSPSEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQ-----------QEFSGKFHLEVFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTLKETQLPRMQESDPVARYYGLKRGQVVKIIRPSETAG

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
89	33		66		0.997452
113	33		66		0.997452
123	66		33		0.997452
221	80			20	0.995493
888		6		87	0.993531
889		6	93		0.999264
891			6	93	0.999453
894			7	92	0.999602
974		6		93	0.999364
1169			63	36	1.0
1219			81	18	1.0
1226		33		66	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain