SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8074

Length: 1335 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8074

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycosyl transferase family 29 protein / sialyltransferase family protein [Arabidopsis thaliana] gb\|AAL36042.1\| At1g08660/F22O13_14 [Arabidopsis thaliana] gb\|AAM70516.1\| At1g08660/F22O13_14 [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	74%
Blast2go	sialyltransferase like protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 29	IPR001675	-	0.0	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7SVI0

Fln msg: your sequence is shorter than subject: 198 - 478

Fln protein: QGVVLRRGAKGTGMKSIELALSMCDTVDIYGFTVDPGYTEWTRYFSSPRKGHNPLQGRAYYQLLECLGVIRIHSPMREQRKQDWSTVPSRAMINGAHTAVMRLKGFQNKHPWSVGPFSACKFWATASSENGPISGSIDMSPVRRGSNYSKWELLKLVDLRKEAREHYKNMKGVTMYKLDGNKLDDLVCVKHPSQSET*

Protein Length: 199

Fln nts: CCAAGGTGTGGTCCTTCGAAGAGGTGCGAAAGGAACTGGAATGAAATCTATAGAATTAGCACTTTCCATGTGTGATACAGTTGATATATATGGCTTCACTGTAGATCCAGGTTACACAGAATGGACACGCTATTTCTCGAGCCCACGCAAAGGGCATAATCCATTGCAGGGACGAGCCTATTATCAGCTTCTTGAATGCCTTGGGGTCATTAGAATCCATTCACCAATGCGAGAACAGAGAAAACAAGATTGGTCCACTGTTCCTAGCCGAGCAATGATAAATGGGGCTCATACTGCTGTAATGAGGTTAAAAGGTTTCCAAAATAAGCATCCATGGAGTGTTGGACCATTTAGTGCTTGTAAGTTTTGGGCAACGGCATCTTCTGAGAATGGTCCTATTTCAGGTTCAATAGACATGAGTCCTGTGCGTAGGGGCTCTAACTACAGCAAATGGGAGTTATTAAAGTTAGTTGATTTGCGGAAGGAAGCACGTGAACACTACAAAAATATGAAAGGTGTCACGATGTACAAATTAGATGGCAACAAACTGGATGATCTTGTTTGTGTGAAGCATCCTTCACAATCCGAGACTTGA___TATGACTCATACTATGCAAAACAGTTATTGTTCAAGATATCCGACATCTAGATGCAACTAACACAGCTGGTGGAATTCAGGACACCTGAATTGCAAGTATGCACGTGTCTGTTATTTTAGTATGCTCTTCAGCTTCTCCAGAATTTGCGTCTAATGCACACATGATAAGGATTCTGTATCCTTTTTGCGACAGTTGATTTGGCACTAACTGAGGCAAGAATAGAGGTATTCTAAAAGTGGGGTATAGTCAATGCTACATCTGCAGGGTTTACTGGTCAAGTTTAATAGTGAATTGGCACTAGGGTATTCTAGCAAATGCTTATCTCATTGGAGCTAGTCCCTGGGGAAGGCCTCAGCTATTCCAGTAGATCAACCTGGCTGTGAAGCAAGAGGATGTCCCACTGGTGGAAACTCCACGGTCTTGACAAAGTAATACCTGCATTTATATTCTACTTTTTGTTTTATTGAAGTCTGAGGCTTTCATGCTTTTGGCAACGGTTTTCTTTGTTTGAAGCGGGGGTGTTGCAAGCTCTGTTATCCTCTCCTAACTTTGTCCAGATTAGGTGTGGTTGAATGAAAAAATTGTGAAGTATCCATTATTCATATAAATAGTAAACTACAACTCTTTGTAGTCCGGTAAGTATATGCGAAACCTGTTCTTTATGCTCCTAATTGCATTTGCTGTGGTACCACGGGATTAGTATCTGTCAATTAAAATATGTATGTACCCTCACGGTCAA

Fln Alignment:

sp_v1.1_unigene8074___QGVVLRRGAKGTGMKSIELALSMCDTVDIYGFTVDPGYTEWTRYFSSPRKGHNPLQGRAYYQLLECLGVIRIHSPMREQRKQDWSTVPSRAMINGAHTAVMRLKGFQNKHPWSVGPFSACKFWATASSEN-GPISGSIDMSPVRRGSNYSKWELLKLVDLRKEAREHYKNMKGVTMYKLDGNKLDDLVCVKH
D7SVI0______________QGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRAERKQDWSDVPSRAMISRAHAAALRLRKGQADQAGDLGQFGNCKVWGNGGPENSGPISGSPDMSDLRRNSNYSKWEAMPFESLRREARDHYFQMEGVSMYKMDGNKLDDLVCVRH

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
713		10		90	0.999898
717	85		5		0.999793
1204	85		14		0.993533
1235	25		75		0.996473
1289	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain