SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8065

Length: 477 nt

Origin of reads: Biogeco_1 Biogeco_2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene8065
ATCTGTTTTTGCTTAGTAAATTTTAGGTGCATATCTAGAAAGCTTAGAGAGTGTTTTTTGTCAAATAAATGAACATTGAATCAATGTTTTTATTTTTCATTTTCAGATTGTTTGCTTTCATTTCCTAGTCAAAAAATGGCACCTAGAGCAAGAGATCCTGCTTGGGCATATGTTGAAATGGTTGATAGTCAAATGCAATGCAAATTTTGCCATAGGAAAATTAAGGAAGGTCCTGGGGGCATTAATAGGCTGAAACAACACTTGGCAGGGATTAGAGGCCAAATTACCCCATGTACCTCACCAGAAATTGGGGAGATTAGACAGAATTTGTTGGCCAGCTTTGAGAAATTTAAAGAAGATAAGGCTAGGCATGGGGACATATAGGCTGAAATTGGGAGGAAGAGGGAGATACAAAAAATGATGGCTACCAGGTACCAACCCCCATTATGATTTTGAGGGTTCTTCCTCTACTCCTAC

Ace file of the UniGene sp_v1.1_unigene8065 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9REN7_RICCO	-	-	2.0e-08	46%
FL-Next	tr=DNA binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	46%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, BED-type predicted	IPR003656	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9REN7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 611 aas, your sequence is shorter than subject: 83 - 739

Fln protein: MAPRARDPAWAYVEMVDSQMQCKFCHRKIKEGPGGINRLKQHLAGIRGQITPCTSPEIGEIRQNLLASFEKFKEDKARHGDI*

Protein Length: 84

Fln nts: ATCTGTTTTTGCTTAGTAAATTTTAGGTGCATATCTAGAAAGCTTAGAGAGTGTTTTTTGTCAAATAAATGAACATTGAATCAATGTTTTTATTTTTCATTTTCAGATTGTTTGCTTTCATTTCCTAGTCAAAAA_-_ATGGCACCTAGAGCAAGAGATCCTGCTTGGGCATATGTTGAAATGGTTGATAGTCAAATGCAATGCAAATTTTGCCATAGGAAAATTAAGGAAGGTCCTGGGGGCATTAATAGGCTGAAACAACACTTGGCAGGGATTAGAGGCCAAATTACCCCATGTACCTCACCAGAAATTGGGGAGATTAGACAGAATTTGTTGGCCAGCTTTGAGAAATTTAAAGAAGATAAGGCTAGGCATGGGGACATATAGGCTGAAATTGGGAGGAAGAGGGAGATACAAAAAATGATGGCTACCAGGTACCAACCCCCATTATGATTTTGAGGGTTCTTCCTCTACTCCTAC

Fln Alignment:

sp_v1.1_unigene8065___SQKMAP-RARDPAWAYVEMVDS---QMQCKFCHRKIKEGPGGINRLKQHLAGIRGQITPCTS-PE--IGEIRQNL-LASFEKFKEDKARHG
B9REN7______________TQSLAPQRATDPGWAHGTMVNGGRQKIKCKYCH-KIFLG-GGISRLKQHLAGERGNVAPCEDVPEEVKVQIQQHLGFKVLERLKKQKEANG

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
104		66		33	0.997452
106		66		33	0.997452
107	66			33	0.997452
199		14	85		0.993533
202		85		14	0.993533
204		85		14	0.993533
215		85		14	0.993533
217	85		14		0.993533
224		28		71	1.0
228	85		14		0.993533
230		66		33	1.0
235			33	66	1.0
238		11		88	0.923564
239	11		88		0.923564
240		88		11	0.923564
244		55		44	1.0
250	11	88			0.923564
270		87		12	0.992554
271	87		12		0.992554
281	12			87	0.992554
283	12		87		0.992554
288			12	87	0.992554
302			10	90	0.90298
303			10	90	0.90298
314		90		10	0.90298
321	10		90		0.90298
322		10	90		0.90298
327		90		10	0.90298
332		10		90	0.90298
343	11			88	0.923564
347		12		87	0.992554
352	12			87	0.992554
353	87			12	0.992554
376	80	20			0.995493
381	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain