SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8054

Length: 1797 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8054

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	-	-	54%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	68%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	0.0	68%
Blast2go	Cyclophilin-like	IPR015891	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNI6

Fln msg: your sequence is longer than subject: 233 - 163

Fln protein: MGRIKPQTLLQQSKKKKGPARISVSTIIVCNLIIIFLMFSLVAIYRQRAKRNRATSGSDGDEEMENFGRSKINSVPHQAIINTTKGLITLELFGKSSAHTVEKFVEWSERGYFNGLPFYRVIKHFVIQVGDPKFAGNREDWTVGGQLNVQLEFSPKHEAFMLGTSKLEDQGDGFELFITTAPIPDLNDKLNVFGRVIKGQDVVQEIEEVDTDEHFQPKSPIIINDVRLKDEL*

Protein Length: 234

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGATCTGCGTGTGACCTTGTCTGTGGCTCGATTTCGTCGAGGGAAGTCGAGTCGGAGTCAAATTCGGGTATAATATGGAGGATGGGTGAGTCAGAATTGGGTAAAAATAGAAGGGAAGACAGAGGATCACCCCAAAACATATTTGTCTGATTGGTCGATTGATTTCTAAGAGGTCCAACGTTGTTTTCTGCTCCTCCACAACCAAATAGTTCATCTCCCCATCTCCTGGTTTTCAGATTCACTATACATTCAAAATTCGAAATTCGATATTCGGGACTGTGTAATCGAAGGTCGGTCTATCTTCAAGGTCCCCAGATCGATCTTCCTCCGAAGAAAGTGAGAGTAGAAACCTTTGAGACAAGCCAGGGGCA_-_ATGGGGAGAATTAAGCCACAGACATTATTGCAGCAGAGCAAAAAGAAAAAAGGACCCGCCCGTATCAGCGTTTCCACCATTATAGTGTGCAACTTGATCATCATCTTTCTTATGTTTTCTCTAGTGGCCATCTACAGGCAGAGGGCCAAGCGGAATCGGGCCACATCTGGGTCTGATGGTGATGAGGAAATGGAGAACTTTGGGAGGTCCAAAATAAACAGCGTTCCTCACCAAGCAATCATAAATACTACAAAGGGTTTAATCACATTGGAACTTTTTGGTAAAAGTTCTGCGCATACCGTTGAAAAGTTTGTGGAGTGGAGTGAACGTGGTTACTTCAATGGATTACCCTTCTATCGTGTCATTAAACACTTTGTAATTCAAGTTGGAGATCCAAAGTTTGCTGGAAACAGGGAAGATTGGACTGTTGGTGGTCAGCTCAATGTTCAACTTGAGTTCAGTCCAAAGCATGAAGCATTCATGCTGGGGACTTCCAAGTTGGAGGATCAGGGAGATGGATTTGAGCTTTTCATAACAACAGCACCCATTCCAGATTTAAACGATAAGCTTAATGTCTTTGGGCGTGTTATAAAAGGTCAAGATGTAGTTCAGGAAATAGAGGAGGTGGATACAGATGAACATTTTCAGCCGAAATCCCCCATCATCATTAATGATGTCCGTTTAAAGGATGAGCTCTGA___GACATACGTGCAGTCCTTTTTCAAGAAATTGTGATCGATAATCAGTTTTTCTTCCAAGTATTGCTTTTCTCCTGTTCTGTCTCGAGCATTTTATATACCCGGAGGAAACAGCGCTGTGGATACCAGGAAGATTGAAGTGTATGTATATTTAGGCAAATATTTCGTAAGTTTTGTGATGTCTCAGTTATTGGCTTTTACCTGTAGAGAAGTTGAGTTCTAAGCTGGAGATTTATTTCTTTACCACCCGAATATTCTCATAGTTCTAGGCCAATTATAATTCTTTAGTCCCTTCTTATGTTGGGGAATGAAATTTACTGTTATTACATTACACTGAATGATCATTAATGTGCCTCAGGATTTTAGCATCTCAGTTTGCCGCTGAACATTTGACAAGAGATTTAATGATTAAGATTTCTTTTGACATTGGGAGAGATTTTTTCTAACTTGCGTTGAGACAAAATGACAATGAACTGCAATCCACTTTCGACAAAAAGGAAGAGATCAAGAATCAAGTTTGATGGGCTGACCCCATGTTAACTTATTAGTTATTATAGTGGAGGTTCCCATTTCCAAGTCAAACAGTTTGGATACCCACTTAATGATACCAGTATAACTATTAATTTTTGTAAAGCCACCAAGCTTGTATAAATGATGCCTTTCTTTTCAAACACCGGAATTTATCATTTATTTGAGTGAAATGAA

Fln Alignment:

sp_v1.1_unigene8054___PHQAIINTTKGLITLELFGKSSAHTVEKFVEWSERGYFNGLPFYRVIKHFVIQVGDPKFAGNREDWTVGGQLNVQLEFSPKHE-AFMLGTSKLEDQGDGFELFITTAPIPDLNDKLNVFGRVIKGQDVVQEIEEVDTDEHFQPKSPIIINDVRLKD
A9NNI6______________PPEVTLETSMGPVAVELYHKHAPKTCRNFLELSRRGYYNNVKFHRVIKDFMVQGGDPTGTGRGGESIYGPRFEDEITRDLKHTGAGILSMANAGPNTNGSQFFISLAPTPWLDEKHTIFGRVCKGMDVVKRLGNVQTDKNDRPIHDVKILRTTVKD

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
179	14			85	0.993533
184		85	14		0.993533
216	12	87			0.992554
220			12	87	0.992554
221		87	12		0.992554
283	88		11		0.923564
300		88		11	0.923564
302			66	33	1.0
322			60	40	1.0
323	40		60		1.0
362	63		36		1.0
440	75	25			0.996473
441	75			25	0.996473
442	66		33		0.997452
446	66	33			0.997452
447	66			33	0.997452
448	66		33		0.997452
449	66	33			0.997452
1307	88	11			0.923564
1310		11		88	0.923564
1311	11		88		0.923564
1312	88			11	0.923564
1314	12			87	0.992554
1315		12		87	0.992554
1316		87	12		0.992554
1318	87			12	0.992554
1319	87		12		0.992554
1325	87			12	0.992554
1326		12	87		0.992554
1328		12		87	0.992554
1330		12		87	0.992554
1356	87		12		0.992554
1360	12			87	0.992554
1361		12		87	0.992554
1364	87			12	0.992554
1369	87			12	0.992554
1370	87		12		0.992554
1372		12		87	0.992554
1375	87	12			0.992554
1412			12	87	0.992554
1417		12		87	0.992554
1418		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain