SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8046

Length: 1281 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8046

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1218 domain containing protein	-	-	3.0e-31	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1218	IPR009606	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB11

Fln msg:

Fln protein: MKRSEKIICSVVGFLGLVAAALAFAAEAKHIRANEVATTTDGTCIYPKSAALQLGIISALALLVAQLIVNISAGCLCCARGPSHRASSNRTIAIICLVVSWITFGIAFVLLMAGAALNDQHYANMRNLDNYCYVVKSGVFAGGAVLALATVTLGIFYYITASAVKKSAEWGPQNQNIAMAQPQYGQSSLQPVFVPENVNAQYSEYPQYPYGSQQPPHAGHTQRAPWKW*

Protein Length: 230

Fln nts: ATTTGGGGGTTAACAGACAGGCGGTGATTTTAGTGCGGCACCCACCACAGGCATTTTAGTGCGACACCCACCACAGGCAATGGTAATGGTATGAGCGGATTGTTTTCGGAAATTGTGAAGTGAATAAAGCAGTGAGAATAGTAAGAGGAGTCAATGTCCTCCAGTCTATATTCAATTAGATTGAGACTTGTAGTACTCTGCGTTTCTTACTAAAGAAGCAAGCAGGCAGAAGAGGCAGTTTTTCTGTAGATTTTGGGTTCTGTATCATATTTATCCAATACCCAACGAGCTTTGAGACCTTGGAATCCACG_-_ATGAAGAGGTCGGAAAAGATAATATGCTCAGTGGTGGGTTTCTTGGGGCTGGTGGCGGCTGCGTTGGCCTTTGCTGCAGAGGCCAAACATATCCGGGCTAACGAGGTCGCAACCACGACAGATGGGACGTGCATATATCCCAAAAGTGCTGCTCTGCAATTGGGAATAATTTCAGCGTTGGCTCTTTTGGTGGCTCAATTGATCGTAAACATTTCAGCTGGTTGCCTGTGTTGCGCACGTGGTCCTTCTCATCGTGCAAGCTCCAACAGGACAATTGCCATCATCTGCCTTGTTGTTTCTTGGATTACTTTCGGAATTGCCTTTGTCTTACTGATGGCTGGAGCTGCTCTTAATGACCAACATTATGCAAACATGAGGAACTTAGATAATTATTGTTATGTTGTGAAGTCCGGTGTTTTTGCAGGAGGAGCAGTACTGGCCTTAGCCACTGTGACTCTTGGCATATTCTACTATATCACAGCATCTGCAGTGAAGAAATCGGCTGAATGGGGACCCCAGAATCAGAATATTGCTATGGCACAACCACAGTATGGGCAGTCCAGTCTCCAACCTGTTTTTGTACCTGAAAATGTAAACGCACAGTACAGTGAGTATCCTCAATATCCTTATGGATCGCAACAGCCTCCACATGCAGGACATACACAAAGAGCCCCTTGGAAATGGTAG___ATGGTGCTCTGTAATTATAGATTTTGAACTGGATAATGTAAGCCTGTGGTGGCTACTTATGCATGTTGCATCTGTCATAAGTTCTTTTTTTCTTAGTTTCTGATCAGTTCAGGCCAGTATCATTTGGTGTCTGTACTTCACTGTATCTTTTTCATAACTGTTTACTGTGAAAAAAAGAAACGATATTCAAGTTTCTAGGCATGCACATTGATAAGCTGTTGGATTCCTTGGTTCATTTTTGATATTCAGTGTTATTGTGTTTCATTTCCTAAGAGGTGTTGGA

Fln Alignment:

sp_v1.1_unigene8046___MKRSEKIICSXXXXXXXXXXXXXXXXEAKHIRANEVATTTDGTCIYPKSAALQLGIISALALLVAQLIVNISAGCLCCARGPSHRASSNRTIAIICLVVSWITFGIAFVLLMAGAALNDQHYANMRNLDNYCYVVKSXXXXXXXXXXXXXXXXXIFYYITASAVKKSAEWGPQNQNIAMAQPQYGQSSLQPVFVPENVNAXXXXXXXXXXXXXXXXH-AGHTQRAPWK
D5AB11______________MKKSEKVICTVVGFLGLVAAALAFAAEAKHIRGGEVTPMEDGMCLYPRSPALPLGTTSGLALLVAQVIVNVSAGCLCCRRGGPYRASSNRTIAIICLVVSWITFVIAFVLLMAGAALNDQHNASMRTFNGYCYVVKSGVFAGGAVLALATVTLGIFYYITASAVKKSAEWGPQNQNIAMAQPQYGQSNLQPVFVPENVHAQYSEYPQYPHGSQQPPQPVGHTQRVPWK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
56			33	66	0.997452
57			33	66	0.997452
58			33	66	0.997452
115			20	80	0.995493
117			20	80	0.995493
245		36		63	1.0
915			95	4	0.999989
916		95	4		0.999989
917	95		4		0.999989
919	95			4	0.999989
925		4	95		0.999988
993		3		96	0.991825
1273	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain