SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8045

Length: 2175 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8045
CGTCGTGACCTTGGCTGTCATTGGGAGCATCATTTCGCACAGGAGGATGCTCTGTTTCTCAGCATTAGCGTCGTNACCNTGCNCTNNCNCATGAATTGGGTCATTTTGCCGGTATTGAAAAACCGCGTATTGATGAGAAAACCGCTCCAGCACACTAATTCCCTACCCTGGTAAATTGCTTTTGAGCTCGATCTGTCTGAGCTGGGAAACCGCTTTCGATTTATCGCAAAGGCCGGAGGCCGGAGTCCGCACTCAAACCTCGCTGTTAATGGAAGCCGTCAGGATTTCCTTATACTAATTTTCGGCTTCAAGAAAGCCTTTCTACTATGAAATGCGGGAGCTGGACAATGGCTGCGACCAAGTTTTCTGTTAACTGATGTCAATAAGCTTGCCGGCAACAAAGGCGGTATCGAAACAATGCGCAAAATGAAGGAAGGATGATTTTAACGGTTTTAGACTGTGGCTTTCTGCGATTTATTCATAAACGGGGAGCGGATGGCCAAGCGCGTTTATCAAGTCTGGAAAGGCAGTAATAAATTTTTTCTTTGTGGAAGACTCATATTTGGACCTGATGTACGGTCTTTGGTTGTCACGCTGTTCCTGATTGTTATTCCCGTTGCAATATTTTGCGTCTTTGTTGCTGGGAAACTTTTGCACAAATTTCTGGGGTACAACAGTGGTTATGCAATTCTTGTGGTGACAATTGTGTATACAATTTATGTGCTGGTGCTGCTCTTGCTTACCTCTGCTAGGGATCCAGGTATTGTTCCACGTGCTCCACATCCACCAGACCCTGAAGATATTTTTGATTCTGCAAATTCTCCTGCTGAATGGGCAGGTGGCCAGACACCACGATTAAGATTACCGCGCACAAAGGATGTTACTGTGAATGGAGTGACAGTTAAAGTCAAGTACTGTGATACTTGTATGCTATATCGTCCCCCACGTTGCTCTCACTGCTCAATTTGTAATAACTGTGTTGAAAGGTTTGACCATCATTGCCCTTGGGTGGGGCAATGCATCGGACAGCGAAATTATCGTTTCTTCTTCATGTTTGTGTCTTCTTGCACTGTTCTGTGCATTTACATTTTTGCGATGTCAGCATTATATATCAAGTTCCTAATGGATGACGACAAACATACAATTTGGCAAGCAATGAGACACTCTCCGGCATCTATTGTTCTCATGATTTATACTTTTATTACTGTTTGGTTTGTTGGTGGACTCACACTCTTTCATCTATACCTCATAAGCATAAATCAGACTACATATGAAAATTTCCGGTATCGATGCGACAACAAAGTTAACCCTTACAATGAAGGGATTATTACCAATTTCAGTGCAATTTTTTGTGTGAACATAAAACCTTCTCAGAATAATTTCCGTGCGAAGGTACAACAGGAAGCATCTGTGCAGACTCGGGTTATTCCTCAAAGCACAGATACTAGAGATGTGGTAGGAGATTTACCTGCAAAAGTGAGCATTGACTTGGAAGCAGGTAGAAAAGCAGCAATGAGAGATGAGTTTGATCCTGAAAGGGAAGGTCATGAAGAATTGCATAGCCGGAAGAGTAATGTGCCTGATACTGTTATGGACATCAAGGAAGGCTATGAGGATGCTTTTACACGAGCTATAGGGCGGCCACTTTCATTAGAGGGGAGTGAAGCCAGAAGTGGATCAAACCCTAGACACTCTAGTTGGGGACGGAAAAGTGGGAGCTGGGAAATCACACCAGATCTACCAGGTTTACCTCCTGGAGACAAAACATTGCCTGGAAACAAGGGTGTGGCTGGAACAGTAAGATCTGAGGACAAATCTTCTTGATGCAGTGCCCAACAAGGTAATATTCTTTTTATGATATGTGACCTCACGGCAGCACTGTTGTCTGGTGTCAGTGTCTTTCAAGGCTACTGACAAAGTCTGTGCAACTCAGTTTGTTCTCCTCAAGACATATAGTACTTCATTGTATTCTAGTTAAAGTTGATACATTCCCATGTGTTGGTCATATTAAAGCTTGTTCAATTTTCAGGATTGAACTGAACCAAACAGGTTTTATGGAGTATTTATCTCACATTTCTGAACGTTGTTAGTTGCTCATGTTTCTTTTTTTATAGATTCAGTGTCAATGATTAGCTGTATTTGATTTGCGTGGTTTGAATCTGATAGTGAAATATC

Ace file of the UniGene sp_v1.1_unigene8045

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger protein, putative (EC:1.3.1.74)	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVN7

Fln msg:

Fln protein: MAKRVYQVWKGSNKFFLCGRLIFGPDVRSLVVTLFLIVIPVAIFCVFVAGKLLHKFLGYNSGYAILVVTIVYTIYVLVLLLLTSARDPGIVPRAPHPPDPEDIFDSANSPAEWAGGQTPRLRLPRTKDVTVNGVTVKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGQRNYRFFFMFVSSCTVLCIYIFAMSALYIKFLMDDDKHTIWQAMRHSPASIVLMIYTFITVWFVGGLTLFHLYLISINQTTYENFRYRCDNKVNPYNEGIITNFSAIFCVNIKPSQNNFRAKVQQEASVQTRVIPQSTDTRDVVGDLPAKVSIDLEAGRKAAMRDEFDPEREGHEELHSRKSNVPDTVMDIKEGYEDAFTRAIGRPLSLEGSEARSGSNPRHSSWGRKSGSWEITPDLPGLPPGDKTLPGNKGVAGTVRSEDKSS*

Protein Length: 444

Fln nts: CGTCGTGACCTTGGCTGTCATTGGGAGCATCATTTCGCACAGGAGGATGCTCTGTTTCTCAGCATTAGCGTCGTaACCcTGCtCTgaCcCATGAATTGGGTCATTTTGCCGGTATTGAAAAACCGCGTATTGATGAGAAAACCGCTCCAGCACACTAATTCCCTACCCTGGTAAATTGCTTTTGAGCTCGATCTGTCTGAGCTGGGAAACCGCTTTCGATTTATCGCAAAGGCCGGAGGCCGGAGTCCGCACTCAAACCTCGCTGTTAATGGAAGCCGTCAGGATTTCCTTATACTAATTTTCGGCTTCAAGAAAGCCTTTCTACTATGAAATGCGGGAGCTGGACAATGGCTGCGACCAAGTTTTCTGTTAACTGATGTCAATAAGCTTGCCGGCAACAAAGGCGGTATCGAAACAATGCGCAAAATGAAGGAAGGATGATTTTAACGGTTTTAGACTGTGGCTTTCTGCGATTTATTCATAAACGGGGAGCGG_-_ATGGCCAAGCGCGTTTATCAAGTCTGGAAAGGCAGTAATAAATTTTTTCTTTGTGGAAGACTCATATTTGGACCTGATGTACGGTCTTTGGTTGTCACGCTGTTCCTGATTGTTATTCCCGTTGCAATATTTTGCGTCTTTGTTGCTGGGAAACTTTTGCACAAATTTCTGGGGTACAACAGTGGTTATGCAATTCTTGTGGTGACAATTGTGTATACAATTTATGTGCTGGTGCTGCTCTTGCTTACCTCTGCTAGGGATCCAGGTATTGTTCCACGTGCTCCACATCCACCAGACCCTGAAGATATTTTTGATTCTGCAAATTCTCCTGCTGAATGGGCAGGTGGCCAGACACCACGATTAAGATTACCGCGCACAAAGGATGTTACTGTGAATGGAGTGACAGTTAAAGTCAAGTACTGTGATACTTGTATGCTATATCGTCCCCCACGTTGCTCTCACTGCTCAATTTGTAATAACTGTGTTGAAAGGTTTGACCATCATTGCCCTTGGGTGGGGCAATGCATCGGACAGCGAAATTATCGTTTCTTCTTCATGTTTGTGTCTTCTTGCACTGTTCTGTGCATTTACATTTTTGCGATGTCAGCATTATATATCAAGTTCCTAATGGATGACGACAAACATACAATTTGGCAAGCAATGAGACACTCTCCGGCATCTATTGTTCTCATGATTTATACTTTTATTACTGTTTGGTTTGTTGGTGGACTCACACTCTTTCATCTATACCTCATAAGCATAAATCAGACTACATATGAAAATTTCCGGTATCGATGCGACAACAAAGTTAACCCTTACAATGAAGGGATTATTACCAATTTCAGTGCAATTTTTTGTGTGAACATAAAACCTTCTCAGAATAATTTCCGTGCGAAGGTACAACAGGAAGCATCTGTGCAGACTCGGGTTATTCCTCAAAGCACAGATACTAGAGATGTGGTAGGAGATTTACCTGCAAAAGTGAGCATTGACTTGGAAGCAGGTAGAAAAGCAGCAATGAGAGATGAGTTTGATCCTGAAAGGGAAGGTCATGAAGAATTGCATAGCCGGAAGAGTAATGTGCCTGATACTGTTATGGACATCAAGGAAGGCTATGAGGATGCTTTTACACGAGCTATAGGGCGGCCACTTTCATTAGAGGGGAGTGAAGCCAGAAGTGGATCAAACCCTAGACACTCTAGTTGGGGACGGAAAAGTGGGAGCTGGGAAATCACACCAGATCTACCAGGTTTACCTCCTGGAGACAAAACATTGCCTGGAAACAAGGGTGTGGCTGGAACAGTAAGATCTGAGGACAAATCTTCTTGA___TGCAGTGCCCAACAAGGTAATATTCTTTTTATGATATGTGACCTCACGGCAGCACTGTTGTCTGGTGTCAGTGTCTTTCAAGGCTACTGACAAAGTCTGTGCAACTCAGTTTGTTCTCCTCAAGACATATAGTACTTCATTGTATTCTAGTTAAAGTTGATACATTCCCATGTGTTGGTCATATTAAAGCTTGTTCAATTTTCAGGATTGAACTGAACCAAACAGGTTTTATGGAGTATTTATCTCACATTTCTGAACGTTGTTAGTTGCTCATGTTTCTTTTTTTATAGATTCAGTGTCAATGATTAGCTGTATTTGATTTGCGTGGTTTGAATCTGATAGTGAAATATC

Fln Alignment:

sp_v1.1_unigene8045___MAKRVYQVWKGSNKFFLCGRLIFGPDVRSLVVTLFLIVIPVAIFCVFVAGKLLHKFLGYNSGYAXXXXXXXXXXXXXXXXXXXSARDPGIVPRAPHPPDPEDIFDSANSPAEWAGGQTPRLRLPRTKDVTVNGVTVKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGQRNYRFFFMFVSSCTVLCIYIFAMSALYIKFLMDDDKHTIWQAMRHSPASIVLMIYTFITVWFVGGLTLFHLYLISINQTTYENFRYRCDNKVNPYNEGIITNFSAIFCVNIKPSQNNFRAKVQQEASVQTRVIPQSTDTRDVVGDLPAKVSIDLEAGRKAAMRDEFDPEREGHEELHSRKSNVPDTVMDIKEGYEDAFTRAIGRPLSLEGSEARSGSNPRHSSWGRKSGSWEITPDLPGLPPGDKTLPGNKGVAGTVRSEDKSS
A9NVN7______________MAKRVYQVWKGSNKFFLCGRLIFGPDVRSLVVTVFLIVIPVVIFCVFVAGKLLHNFPGYNSGYAILVVTIVYTVYVLVLLLLTSARDPGIVPRAPHPPEPEDIFDSANSPAEWAGGQTPRIRLPRTKDVTVNDVTVKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGQRNYRFFFMFVSSCTLLCIYIFAMSALYIKFLMDDDKHTIWQAMRHTPASIVLMIYTFITVWFVGGLTLFHLYLISINQTTYENFRYRCDNKVNPYNEGIITNFSAIFCTNIKPSQNNFRAKVQQEASVQTRVIPQSTDTRDVIGDLAAKVSIDLEAGRKAAMRDEFDPEREGHEELHSRKSNGPDTVMDIKEGYEDAFTRAIGRPLSLEGSEARSGSHPRHSSWGRKSGSWEITPDLPALPPGDKALPGNKGVAGTARPEDKSS

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
69		33		33	0.997753
70			33	66	0.997452
73		66	33		0.997452
75		75	25		0.996473
79		75		25	0.996473
83	75		25		0.996473
86			25	75	0.996473
87		75		25	0.996473
89	25	75			0.996473
92			75	25	0.996473
94	25	75			0.996473
114	75			25	0.996473
192		33		66	0.997452
200	60	40			1.0
202		60		40	1.0
203		40		60	1.0
205			60	40	1.0
208	60	40			1.0
209	60			40	1.0
210		60		40	1.0
211		60	40		1.0
215			40	60	1.0
218	40		60		1.0
219	60	40			1.0
221		40		60	1.0
222	40			60	1.0
334			83	16	0.994512
359		83		16	0.994512
436		10	90		0.90298
437		10	90		0.90298
438	90			10	0.90298
441	90		10		0.90298
442		10		90	0.90298
444			10	90	0.90298
446	90	10			0.90298
449		10	90		0.90298
450	10		90		0.90298
965			10	90	0.90298
966		10		90	0.90298
967		10		90	0.90298
1293		85		14	0.999981
1313	88		11		0.923564
1316	88		11		0.923564
1322			88	11	0.923564
1326		11		88	0.923564
1329			11	88	0.923564
1330	88		11		0.923564
1860		25		75	0.996473
1861	75		25		0.996473
1873		75		25	0.996473
1877	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain